Wall clock time and date at job start Mon Mar 30 2020 03:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.47054 * 2 1 4 4 C 1.42902 * 114.00590 * 179.97438 * 3 2 1 5 5 H 1.09004 * 115.55773 * 355.70295 * 4 3 2 6 6 C 1.52992 * 117.50327 * 210.01884 * 4 3 2 7 7 H 1.08997 * 117.52204 * 359.97438 * 6 4 3 8 8 C 1.53006 * 117.50018 * 145.02139 * 6 4 3 9 9 C 1.52992 * 117.50508 * 141.38916 * 4 3 2 10 10 H 1.09000 * 117.52275 * 214.97948 * 9 4 3 11 11 C 1.50700 * 117.49434 * 0.02562 * 9 4 3 12 12 O 1.21293 * 120.00282 * 68.61891 * 11 9 4 13 13 N 1.34777 * 120.00075 * 248.61789 * 11 9 4 14 14 C 1.37104 * 120.00173 * 180.02562 * 13 11 9 15 15 H 1.08002 * 119.99666 * 359.97438 * 14 13 11 16 16 C 1.38945 * 120.00001 * 180.27893 * 14 13 11 17 17 N 1.31414 * 119.99893 * 359.72318 * 16 14 13 18 18 Si 1.86801 * 119.99957 * 179.72309 * 16 14 13 19 19 H 1.48494 * 109.47230 * 359.97438 * 18 16 14 20 20 H 1.48502 * 109.46780 * 119.99924 * 18 16 14 21 21 H 1.48495 * 109.46909 * 239.99525 * 18 16 14 22 22 H 1.08999 * 109.46719 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46816 * 299.99729 * 1 2 3 24 24 H 1.08999 * 109.46977 * 60.00047 * 1 2 3 25 25 H 1.09001 * 109.47680 * 240.00058 * 2 1 3 26 26 H 1.09007 * 109.47424 * 119.99531 * 2 1 3 27 27 H 1.09000 * 109.46929 * 128.62187 * 8 6 4 28 28 H 1.08999 * 109.46980 * 248.61779 * 8 6 4 29 29 H 1.08991 * 109.46907 * 8.61781 * 8 6 4 30 30 H 0.97000 * 120.00140 * 0.02562 * 13 11 9 31 31 H 0.97004 * 119.99542 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4603 0.0006 5 1 3.9772 0.5199 0.0746 6 6 4.0420 2.6875 0.6796 7 1 3.3578 3.4093 1.1256 8 6 5.3732 2.5011 1.4104 9 6 4.0517 2.5730 -0.8461 10 1 5.0064 2.3653 -1.3292 11 6 3.1140 3.4665 -1.6165 12 8 2.3893 4.2387 -1.0252 13 7 3.0808 3.4076 -2.9626 14 6 2.2281 4.2209 -3.6635 15 1 1.5828 4.9084 -3.1370 16 6 2.1896 4.1560 -5.0509 17 7 2.9745 3.3190 -5.6916 18 14 1.0223 5.2585 -6.0055 19 1 0.2522 6.1028 -5.0573 20 1 1.8018 6.1282 -6.9228 21 1 0.0848 4.4206 -6.7954 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8901 27 1 6.0834 3.2544 1.0695 28 1 5.2166 2.6087 2.4837 29 1 5.7678 1.5074 1.1986 30 1 3.6601 2.7898 -3.4355 31 1 2.9479 3.2740 -6.6602 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906480681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:49 Heat of formation + Delta-G solvation = -90.123994 kcal Electronic energy + Delta-G solvation = -14259.424381 eV Core-core repulsion = 11733.651629 eV Total energy + Delta-G solvation = -2525.772752 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.74165 -38.93011 -36.72669 -35.82916 -33.24615 -31.86540 -29.42571 -27.22515 -24.20424 -23.70761 -21.79426 -20.70934 -19.84237 -18.48176 -17.07961 -16.63031 -16.35958 -16.13098 -15.72735 -15.11726 -14.53310 -14.22216 -13.81967 -13.55858 -13.38951 -13.37329 -13.13748 -12.95455 -12.44624 -12.37662 -12.14546 -12.09520 -11.74875 -11.54332 -10.93902 -10.44414 -10.05186 -9.95667 -8.48629 -5.97221 1.33575 1.38287 1.53583 1.92116 2.27696 2.55026 2.83579 3.14519 3.35142 3.84672 3.98857 4.04498 4.17979 4.34240 4.39830 4.47567 4.51343 4.58057 4.85279 4.88433 4.99917 5.00410 5.22865 5.23907 5.38232 5.44003 5.98342 6.38733 6.58487 7.10751 7.55312 8.12613 8.69512 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.029040 B = 0.008550 C = 0.007336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.969399 B = 3274.059003 C = 3816.101649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.385 6.385 4 C 0.054 3.946 5 H 0.157 0.843 6 C -0.123 4.123 7 H 0.082 0.918 8 C -0.109 4.109 9 C -0.201 4.201 10 H 0.143 0.857 11 C 0.474 3.526 12 O -0.636 6.636 13 N -0.570 5.570 14 C -0.335 4.335 15 H 0.074 0.926 16 C -0.013 4.013 17 N -0.920 5.920 18 Si 0.994 3.006 19 H -0.276 1.276 20 H -0.267 1.267 21 H -0.268 1.268 22 H 0.103 0.897 23 H 0.058 0.942 24 H 0.036 0.964 25 H 0.053 0.947 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.395 0.605 31 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.348 -9.287 9.244 13.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.304 6.304 4 C -0.004 4.004 5 H 0.174 0.826 6 C -0.143 4.143 7 H 0.100 0.900 8 C -0.165 4.165 9 C -0.223 4.223 10 H 0.160 0.840 11 C 0.263 3.737 12 O -0.523 6.523 13 N -0.205 5.205 14 C -0.464 4.464 15 H 0.092 0.908 16 C -0.213 4.213 17 N -0.561 5.561 18 Si 0.817 3.183 19 H -0.200 1.200 20 H -0.191 1.191 21 H -0.193 1.193 22 H 0.121 0.879 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.229 0.771 31 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.756 -8.661 9.409 13.082 hybrid contribution -0.317 0.349 -1.060 1.160 sum 2.439 -8.312 8.350 12.031 Atomic orbital electron populations 1.21775 0.93648 1.03511 1.01854 1.22800 0.96051 0.82465 1.01420 1.88016 1.19869 1.28661 1.93892 1.23203 0.82009 0.94395 1.00825 0.82568 1.22776 1.00535 0.99736 0.91223 0.89964 1.21366 0.91963 1.03212 1.00003 1.22879 1.00974 1.03360 0.95073 0.83958 1.19839 0.85840 0.85650 0.82405 1.90447 1.47716 1.44390 1.69788 1.41840 1.37152 1.36547 1.04999 1.19692 1.18539 1.18327 0.89845 0.90825 1.26064 0.99417 0.98954 0.96858 1.69686 1.39348 1.37315 1.09759 0.84863 0.77806 0.77869 0.77724 1.20043 1.19148 1.19324 0.87891 0.92279 0.94442 0.92821 0.90321 0.91546 0.90465 0.89919 0.77087 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 10.28 71.98 0.74 -3.19 16 2 C 0.05 1.32 6.53 71.98 0.47 1.79 16 3 O -0.39 -14.81 10.01 -148.98 -1.49 -16.30 16 4 C 0.05 1.74 6.05 30.59 0.19 1.93 16 5 H 0.16 3.42 7.83 -2.38 -0.02 3.40 16 6 C -0.12 -4.04 5.87 -10.79 -0.06 -4.10 16 7 H 0.08 3.31 7.67 -2.39 -0.02 3.29 16 8 C -0.11 -2.29 10.19 71.98 0.73 -1.56 16 9 C -0.20 -7.71 5.91 -11.54 -0.07 -7.78 16 10 H 0.14 4.52 8.14 -2.39 -0.02 4.50 16 11 C 0.47 25.24 7.08 87.66 0.62 25.86 16 12 O -0.64 -39.33 15.83 -3.07 -0.05 -39.38 16 13 N -0.57 -31.91 5.29 -306.98 -1.62 -33.53 16 14 C -0.33 -20.33 9.68 84.04 0.81 -19.51 16 15 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 16 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 17 N -0.92 -51.54 13.05 21.66 0.28 -51.26 16 18 Si 0.99 44.76 29.55 68.60 2.03 46.79 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 25 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.31 7.90 -2.39 -0.02 1.29 16 30 H 0.40 20.97 7.90 -92.71 -0.73 20.24 16 31 H 0.28 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -75.83 274.04 3.43 -72.40 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.39 Total: 28.13 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 3.90 Total: -6.85 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.34 Total: -84.79 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -1.54 Total: -55.67 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -75.83 3.43 -72.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906480681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.727 kcal (2) G-P(sol) polarization free energy of solvation -75.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds