Wall clock time and date at job start Mon Mar 30 2020 03:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47257 * 2 1 4 4 C 1.42894 * 114.00028 * 179.97438 * 3 2 1 5 5 H 1.08993 * 115.55321 * 355.72261 * 4 3 2 6 6 C 1.53077 * 117.49217 * 209.98798 * 4 3 2 7 7 H 1.09007 * 117.50897 * 145.04068 * 6 4 3 8 8 C 1.52999 * 117.49632 * 0.02562 * 6 4 3 9 9 C 1.52999 * 59.98371 * 252.51646 * 6 4 3 10 10 H 1.09002 * 117.49573 * 107.50327 * 9 6 4 11 11 C 1.50702 * 117.49956 * 252.49715 * 9 6 4 12 12 O 1.21293 * 120.00255 * 359.91856 * 11 9 6 13 13 N 1.34783 * 120.00004 * 179.91747 * 11 9 6 14 14 C 1.37092 * 119.99804 * 180.02562 * 13 11 9 15 15 H 1.08002 * 120.00499 * 0.02562 * 14 13 11 16 16 C 1.38956 * 119.99671 * 179.72159 * 14 13 11 17 17 N 1.31414 * 120.00152 * 0.27554 * 16 14 13 18 18 Si 1.86803 * 119.99914 * 180.27723 * 16 14 13 19 19 H 1.48498 * 109.47174 * 90.00084 * 18 16 14 20 20 H 1.48501 * 109.47062 * 210.00035 * 18 16 14 21 21 H 1.48504 * 109.46913 * 329.99834 * 18 16 14 22 22 H 1.08999 * 109.47061 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47711 * 300.00368 * 1 2 3 24 24 H 1.09003 * 109.46785 * 60.00343 * 1 2 3 25 25 H 1.08992 * 109.47580 * 239.99477 * 2 1 3 26 26 H 1.08998 * 109.46966 * 119.99203 * 2 1 3 27 27 H 1.09002 * 109.46550 * 351.39806 * 8 6 4 28 28 H 1.08997 * 109.46773 * 111.39387 * 8 6 4 29 29 H 1.08995 * 109.46995 * 231.39380 * 8 6 4 30 30 H 0.97000 * 119.99715 * 359.97438 * 13 11 9 31 31 H 0.96991 * 119.99827 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 1 3.9769 0.5197 0.0743 6 6 4.0421 2.6884 0.6794 7 1 4.9906 2.5561 1.2000 8 6 3.0811 3.7009 1.3057 9 6 4.0516 2.5729 -0.8462 10 1 3.3735 3.2188 -1.4040 11 6 5.3716 2.2851 -1.5141 12 8 6.3746 2.1557 -0.8445 13 7 5.4375 2.1714 -2.8555 14 6 6.6382 1.9091 -3.4629 15 1 7.5312 1.7930 -2.8666 16 6 6.7051 1.7862 -4.8454 17 7 5.6185 1.9268 -5.5710 18 14 8.3398 1.4210 -5.6726 19 1 8.5218 -0.0487 -5.7818 20 1 8.3534 2.0237 -7.0297 21 1 9.4436 1.9978 -4.8637 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 1.8933 -0.5139 -0.8898 26 1 1.8933 -0.5137 0.8900 27 1 2.0572 3.4486 1.0298 28 1 3.1821 3.6745 2.3906 29 1 3.3195 4.7007 0.9428 30 1 4.6353 2.2746 -3.3909 31 1 5.6654 1.8413 -6.5360 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906480682.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:52 Heat of formation + Delta-G solvation = -90.062226 kcal Electronic energy + Delta-G solvation = -14050.250237 eV Core-core repulsion = 11524.480164 eV Total energy + Delta-G solvation = -2525.770073 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80347 -39.12069 -36.65641 -35.83483 -33.30436 -31.74534 -29.62679 -27.28300 -24.26698 -23.69859 -21.73054 -20.77500 -19.86517 -18.31842 -17.31862 -16.80837 -16.50908 -16.12615 -15.74327 -15.13512 -14.78877 -14.09887 -13.82275 -13.56978 -13.38301 -13.26275 -13.02688 -12.96003 -12.51807 -12.46997 -12.14346 -12.04685 -11.73053 -11.57114 -11.04891 -10.59390 -10.10973 -10.01460 -8.51470 -6.01578 1.33719 1.40068 1.53780 1.79152 2.23643 2.40317 2.83278 3.15937 3.25488 3.77577 3.89592 4.05805 4.19597 4.33884 4.41584 4.43901 4.49824 4.54758 4.84449 4.91979 4.98915 5.05062 5.17287 5.28995 5.36051 5.48244 5.93399 6.20064 6.51453 7.04611 7.47989 8.02221 8.65947 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.036173 B = 0.007072 C = 0.006298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.877533 B = 3958.438703 C = 4444.576739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 O -0.359 6.359 4 C 0.056 3.944 5 H 0.107 0.893 6 C -0.113 4.113 7 H 0.106 0.894 8 C -0.111 4.111 9 C -0.190 4.190 10 H 0.125 0.875 11 C 0.464 3.536 12 O -0.634 6.634 13 N -0.563 5.563 14 C -0.340 4.340 15 H 0.082 0.918 16 C -0.012 4.012 17 N -0.919 5.919 18 Si 0.998 3.002 19 H -0.269 1.269 20 H -0.269 1.269 21 H -0.271 1.271 22 H 0.092 0.908 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.045 0.955 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.062 0.938 30 H 0.396 0.604 31 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.755 -2.090 8.416 13.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 O -0.278 6.278 4 C -0.003 4.003 5 H 0.125 0.875 6 C -0.132 4.132 7 H 0.124 0.876 8 C -0.168 4.168 9 C -0.212 4.212 10 H 0.143 0.857 11 C 0.252 3.748 12 O -0.522 6.522 13 N -0.198 5.198 14 C -0.469 4.469 15 H 0.100 0.900 16 C -0.212 4.212 17 N -0.559 5.559 18 Si 0.821 3.179 19 H -0.194 1.194 20 H -0.193 1.193 21 H -0.196 1.196 22 H 0.111 0.889 23 H 0.086 0.914 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.230 0.770 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.275 -2.029 8.617 12.822 hybrid contribution 0.643 -0.276 -1.049 1.261 sum -8.633 -2.305 7.568 11.709 Atomic orbital electron populations 1.21745 0.91715 1.03660 1.03013 1.22825 0.96983 0.82505 1.00824 1.87771 1.17710 1.28381 1.93902 1.22593 0.82171 0.93889 1.01644 0.87528 1.22871 1.00780 0.98263 0.91320 0.87593 1.21230 0.98047 0.96693 1.00862 1.22681 0.96344 1.06258 0.95879 0.85677 1.19792 0.89817 0.82716 0.82425 1.90460 1.38662 1.58451 1.64648 1.41917 1.10610 1.61730 1.05495 1.19759 0.88284 1.47923 0.90984 0.90003 1.26156 1.02670 0.96178 0.96231 1.69689 1.29641 1.49130 1.07426 0.84857 0.76864 0.78745 0.77426 1.19380 1.19343 1.19571 0.88885 0.91365 0.92404 0.93646 0.91874 0.91301 0.90188 0.91890 0.77032 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.04 1.05 6.53 71.98 0.47 1.52 16 3 O -0.36 -10.68 9.32 -148.98 -1.39 -12.07 16 4 C 0.06 1.90 6.12 30.62 0.19 2.09 16 5 H 0.11 3.66 7.93 -2.39 -0.02 3.65 16 6 C -0.11 -3.77 5.92 -10.77 -0.06 -3.84 16 7 H 0.11 3.82 7.67 -2.38 -0.02 3.80 16 8 C -0.11 -2.86 10.14 71.98 0.73 -2.13 16 9 C -0.19 -7.47 5.85 -11.54 -0.07 -7.54 16 10 H 0.13 4.62 8.14 -2.39 -0.02 4.60 16 11 C 0.46 23.68 7.57 87.66 0.66 24.34 16 12 O -0.63 -36.53 15.83 -3.07 -0.05 -36.58 16 13 N -0.56 -30.58 5.29 -306.97 -1.62 -32.20 16 14 C -0.34 -19.87 9.68 84.04 0.81 -19.06 16 15 H 0.08 5.04 7.16 -2.91 -0.02 5.02 16 16 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 17 N -0.92 -50.62 13.05 21.67 0.28 -50.34 16 18 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 19 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 1.13 8.14 -2.39 -0.02 1.12 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.74 6.94 -2.39 -0.02 1.73 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.40 20.77 7.90 -92.71 -0.73 20.03 16 31 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -66.57 272.99 3.58 -62.99 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.39 Total: 29.59 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 3.94 Total: -6.64 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.34 Total: -82.54 kcal Atomic # 8 Polarization: -47.21 SS G_CDS: -1.44 Total: -48.65 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.57 3.58 -62.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906480682.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.074 kcal (2) G-P(sol) polarization free energy of solvation -66.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds