Wall clock time and date at job start Mon Mar 30 2020 03:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 C 1.50698 * 109.46939 * 240.00503 * 2 1 3 13 13 O 1.21280 * 119.99901 * 239.99860 * 12 2 1 14 14 N 1.34774 * 120.00338 * 59.99981 * 12 2 1 15 15 C 1.47075 * 136.05566 * 359.63328 * 14 12 2 16 16 C 1.53753 * 87.88663 * 152.96204 * 15 14 12 17 17 C 1.52994 * 114.08739 * 139.78135 * 16 15 14 18 18 O 1.42902 * 109.47481 * 91.55815 * 17 16 15 19 19 C 1.47064 * 136.06258 * 179.97438 * 14 12 2 20 20 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 21 21 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 23 23 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 24 24 H 1.09005 * 113.46071 * 267.69171 * 15 14 12 25 25 H 1.08995 * 113.46902 * 38.12659 * 15 14 12 26 26 H 1.09005 * 114.56942 * 272.65547 * 16 15 14 27 27 H 1.08999 * 109.47180 * 211.55827 * 17 16 15 28 28 H 1.08999 * 109.47147 * 331.55548 * 17 16 15 29 29 H 0.96701 * 113.99747 * 180.02562 * 18 17 16 30 30 H 1.09008 * 113.46675 * 321.86709 * 19 14 12 31 31 H 1.08996 * 113.46884 * 92.30067 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 6 2.0323 -0.7103 -1.2305 13 8 2.7295 -1.6964 -1.1193 14 7 1.7067 -0.2498 -2.4546 15 6 0.9104 0.8651 -2.9893 16 6 1.8014 0.8261 -4.2417 17 6 1.0427 1.0302 -5.5545 18 8 1.0301 2.4200 -5.8864 19 6 1.9863 -0.6444 -3.8434 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 0.7089 1.1611 3.4845 24 1 -0.1284 0.6007 -3.1873 25 1 1.0092 1.7848 -2.4128 26 1 2.7090 1.4257 -4.1710 27 1 1.5357 0.4711 -6.3498 28 1 0.0186 0.6744 -5.4413 29 1 0.5643 2.6237 -6.7090 30 1 3.0019 -1.0105 -3.9946 31 1 1.2315 -1.3070 -4.2668 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328662604.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:58 Heat of formation + Delta-G solvation = -80.057735 kcal Electronic energy + Delta-G solvation = -14339.989378 eV Core-core repulsion = 11814.653132 eV Total energy + Delta-G solvation = -2525.336246 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40654 -39.11925 -37.16317 -35.81715 -32.87943 -31.11687 -27.37279 -26.91221 -26.82469 -23.97590 -21.47624 -19.96916 -18.41722 -18.17310 -17.59136 -17.11165 -16.85867 -16.15390 -15.47910 -15.23567 -14.54993 -14.15165 -13.77670 -13.73044 -13.49770 -13.11102 -12.98044 -12.70678 -12.61988 -12.26827 -12.03703 -11.94270 -11.66549 -11.09640 -10.76844 -10.63065 -10.32874 -9.64833 -8.18347 -6.30150 1.39198 1.41633 1.50113 1.80963 2.01701 2.43196 3.07447 3.10571 3.60462 3.87241 4.07782 4.36286 4.40439 4.48608 4.58662 4.60519 4.68838 4.70579 4.84833 4.89457 4.93073 5.12623 5.29905 5.45773 5.68190 5.91785 6.18272 6.71880 6.83897 7.03990 7.35304 7.42779 8.87709 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.060686 B = 0.006914 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.282404 B = 4048.648355 C = 4342.605619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.032 3.968 3 H 0.033 0.967 4 C -0.535 4.535 5 H 0.048 0.952 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.961 3.039 9 H -0.271 1.271 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.545 3.455 13 O -0.592 6.592 14 N -0.664 5.664 15 C 0.105 3.895 16 C -0.109 4.109 17 C 0.096 3.904 18 O -0.594 6.594 19 C 0.104 3.896 20 H 0.050 0.950 21 H 0.021 0.979 22 H 0.072 0.928 23 H 0.267 0.733 24 H 0.106 0.894 25 H 0.070 0.930 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.400 0.600 30 H 0.069 0.931 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.898 2.740 -16.628 17.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.011 3.989 3 H 0.051 0.949 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.786 3.214 9 H -0.196 1.196 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.338 3.662 13 O -0.473 6.473 14 N -0.400 5.400 15 C -0.018 4.018 16 C -0.129 4.129 17 C 0.018 3.982 18 O -0.403 6.403 19 C -0.018 4.018 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.091 0.909 23 H 0.076 0.924 24 H 0.124 0.876 25 H 0.088 0.912 26 H 0.116 0.884 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.250 0.750 30 H 0.087 0.913 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.223 2.297 -15.653 16.146 hybrid contribution 0.142 -0.503 0.600 0.796 sum -3.080 1.794 -15.053 15.469 Atomic orbital electron populations 1.21540 0.94872 0.99278 1.01681 1.18720 0.95512 0.95487 0.89183 0.94915 1.21260 1.32013 1.12902 0.91144 0.93414 1.25657 0.95059 0.95744 1.01544 1.69951 1.37025 1.23513 1.24545 0.85577 0.78653 0.78731 0.78477 1.19583 1.19976 1.20157 1.21272 0.78128 0.83040 0.83798 1.90494 1.41038 1.29032 1.86712 1.49854 1.52587 1.32941 1.04584 1.23366 0.96664 0.89463 0.92269 1.22885 0.99922 0.95776 0.94272 1.21993 0.99539 0.82531 0.94167 1.86454 1.80783 1.25079 1.47986 1.23076 1.02516 0.96743 0.79432 0.93141 0.95945 0.90944 0.92420 0.87597 0.91180 0.88427 0.90879 0.91163 0.74969 0.91268 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 8.85 71.98 0.64 -4.94 16 2 C 0.03 1.73 2.52 -12.29 -0.03 1.70 16 3 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.53 -32.50 8.37 25.60 0.21 -32.28 16 5 H 0.05 3.09 6.75 -2.91 -0.02 3.07 16 6 C 0.02 1.11 5.30 84.66 0.45 1.56 16 7 N -0.91 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.96 46.03 29.54 68.60 2.03 48.06 16 9 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 C 0.54 27.44 7.40 87.66 0.65 28.09 16 13 O -0.59 -34.27 16.23 -3.03 -0.05 -34.32 16 14 N -0.66 -24.92 3.64 -857.83 -3.12 -28.04 16 15 C 0.10 2.90 6.29 83.26 0.52 3.42 16 16 C -0.11 -2.42 4.37 -10.38 -0.05 -2.47 16 17 C 0.10 1.36 6.96 71.98 0.50 1.86 16 18 O -0.59 -9.52 13.66 -148.98 -2.04 -11.55 16 19 C 0.10 2.77 8.19 83.17 0.68 3.46 16 20 H 0.05 2.00 6.33 -2.38 -0.02 1.98 16 21 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 23 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.11 2.39 7.83 -2.38 -0.02 2.37 16 25 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.10 2.42 8.14 -2.38 -0.02 2.40 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.07 0.77 7.80 -2.39 -0.02 0.75 16 29 H 0.40 2.36 9.12 -74.06 -0.68 1.68 16 30 H 0.07 1.92 8.14 -2.38 -0.02 1.91 16 31 H 0.11 2.23 8.10 -2.39 -0.02 2.21 16 Total: -1.00 -75.62 263.12 1.10 -74.53 By element: Atomic # 1 Polarization: 2.91 SS G_CDS: 0.45 Total: 3.36 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 3.58 Total: 0.38 kcal Atomic # 7 Polarization: -77.58 SS G_CDS: -2.88 Total: -80.45 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -2.08 Total: -45.87 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.62 1.10 -74.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328662604.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.530 kcal (2) G-P(sol) polarization free energy of solvation -75.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds