Wall clock time and date at job start Mon Mar 30 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 H 1.08997 * 109.47242 * 59.59579 * 3 2 1 5 5 C 1.50702 * 109.47034 * 179.59907 * 3 2 1 6 6 H 1.07997 * 120.00507 * 119.99964 * 5 3 2 7 7 C 1.37876 * 119.99784 * 299.99645 * 5 3 2 8 8 N 1.31521 * 120.00201 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 120.00097 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46792 * 89.99848 * 9 7 5 11 11 H 1.48496 * 109.47046 * 209.99871 * 9 7 5 12 12 H 1.48498 * 109.46998 * 330.00097 * 9 7 5 13 13 N 1.46905 * 109.47166 * 299.59180 * 3 2 1 14 14 C 1.46899 * 111.00258 * 292.73967 * 13 3 2 15 15 C 1.52998 * 109.47089 * 162.35545 * 14 13 3 16 16 O 1.42901 * 109.47365 * 66.70908 * 15 14 13 17 17 C 1.46895 * 110.99803 * 168.77701 * 13 3 2 18 18 C 1.52998 * 117.50049 * 355.40758 * 17 13 3 19 19 C 1.53001 * 117.50106 * 286.74304 * 17 13 3 20 20 H 1.08991 * 109.46990 * 305.03798 * 1 2 3 21 21 H 1.09007 * 109.46301 * 65.03424 * 1 2 3 22 22 H 1.08997 * 109.47348 * 185.03321 * 1 2 3 23 23 H 1.09004 * 109.46919 * 239.99771 * 2 1 3 24 24 H 1.08996 * 109.46894 * 119.99939 * 2 1 3 25 25 H 0.96997 * 120.00077 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.46433 * 282.35161 * 14 13 3 27 27 H 1.08996 * 109.47457 * 42.34562 * 14 13 3 28 28 H 1.09004 * 109.46818 * 186.70870 * 15 14 13 29 29 H 1.09000 * 109.47022 * 306.70258 * 15 14 13 30 30 H 0.96696 * 113.99617 * 184.98680 * 16 15 14 31 31 H 1.09005 * 115.54645 * 141.07428 * 17 13 3 32 32 H 1.09000 * 117.49909 * 359.97438 * 18 17 13 33 33 H 1.09005 * 117.49903 * 145.02000 * 18 17 13 34 34 H 1.09001 * 117.49840 * 214.97957 * 19 17 13 35 35 H 1.08992 * 117.49909 * 0.02562 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6708 1.9584 0.8863 5 6 3.5470 1.4425 0.0099 6 1 4.0924 1.9082 -0.7975 7 6 4.2295 0.8479 1.0500 8 7 5.5447 0.8474 1.0585 9 14 3.2862 0.0417 2.4464 10 1 3.0414 -1.3859 2.1189 11 1 4.0802 0.1335 3.6979 12 1 1.9872 0.7368 2.6322 13 7 1.5584 2.1321 -1.2044 14 6 2.1739 1.5706 -2.4143 15 6 1.3559 1.9813 -3.6402 16 8 1.4560 3.3944 -3.8281 17 6 1.7986 3.5785 -1.1142 18 6 2.3767 4.1184 0.1955 19 6 0.9121 4.3839 -0.1621 20 1 -0.3633 0.5900 0.8414 21 1 -0.3632 0.4338 -0.9317 22 1 -0.3634 -1.0237 0.0902 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 6.0248 0.4294 1.7904 26 1 3.1915 1.9487 -2.5131 27 1 2.1960 0.4834 -2.3396 28 1 1.7410 1.4693 -4.5221 29 1 0.3117 1.7080 -3.4885 30 1 0.9010 3.7364 -4.5423 31 1 2.1121 4.0616 -2.0397 32 1 2.5784 3.4004 0.9904 33 1 3.0702 4.9570 0.1317 34 1 0.6427 5.3969 -0.4610 35 1 0.1510 3.8404 0.3976 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042479239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:01 Heat of formation + Delta-G solvation = -9.335779 kcal Electronic energy + Delta-G solvation = -15543.685637 eV Core-core repulsion = 13157.249219 eV Total energy + Delta-G solvation = -2386.436417 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.57396 -36.20769 -34.45090 -32.20847 -31.43391 -28.28207 -26.38513 -22.72294 -21.84802 -21.46049 -20.85105 -18.33074 -17.10928 -16.63138 -15.67834 -15.26149 -14.43243 -13.98754 -13.38762 -13.06988 -12.94278 -12.56662 -11.94021 -11.75383 -11.61105 -11.59624 -10.95429 -10.85011 -10.64573 -10.22337 -10.17918 -9.86164 -9.64051 -9.57055 -9.42965 -9.21456 -8.92418 -8.54094 -6.99413 -6.08700 -4.07603 3.25761 3.37558 3.38875 4.38732 4.64119 4.68598 5.10116 5.23521 5.66740 5.73016 5.82317 5.93031 5.95996 6.03473 6.04191 6.14567 6.27371 6.38458 6.43663 6.58896 6.68662 6.76494 6.85006 6.85947 7.00982 7.09720 7.24672 7.29368 7.60010 7.96664 8.19226 8.26607 8.49935 8.96449 9.54493 11.04236 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.012375 C = 0.011686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.420421 B = 2262.159153 C = 2395.475479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.174 3.826 4 H 0.042 0.958 5 C -0.533 4.533 6 H 0.078 0.922 7 C 0.073 3.927 8 N -0.898 5.898 9 Si 0.882 3.118 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.496 5.496 14 C 0.063 3.937 15 C 0.080 3.920 16 O -0.566 6.566 17 C 0.045 3.955 18 C -0.197 4.197 19 C -0.195 4.195 20 H 0.042 0.958 21 H 0.060 0.940 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.263 0.737 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.037 0.963 29 H 0.046 0.954 30 H 0.364 0.636 31 H 0.120 0.880 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.432 1.860 -5.853 11.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.067 3.933 4 H 0.060 0.940 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.129 4.129 8 N -0.536 5.536 9 Si 0.713 3.287 10 H -0.206 1.206 11 H -0.226 1.226 12 H -0.190 1.190 13 N -0.217 5.217 14 C -0.065 4.065 15 C 0.002 3.998 16 O -0.370 6.370 17 C -0.064 4.064 18 C -0.235 4.235 19 C -0.233 4.233 20 H 0.061 0.939 21 H 0.079 0.921 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.055 0.945 29 H 0.064 0.936 30 H 0.210 0.790 31 H 0.137 0.863 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.358 1.640 -5.293 10.876 hybrid contribution 0.167 -0.420 0.499 0.673 sum -9.192 1.220 -4.794 10.438 Atomic orbital electron populations 1.21697 0.97318 0.99042 1.01733 1.21962 0.94120 0.99491 1.00496 1.19892 0.94165 0.89901 0.89342 0.94012 1.21620 0.89840 1.36807 1.08851 0.90447 1.24967 0.94622 0.95606 0.97729 1.69912 1.06455 1.44694 1.32506 0.86934 0.80003 0.80075 0.81725 1.20608 1.22628 1.19013 1.62092 1.55809 1.01069 1.02752 1.21999 0.96378 0.99697 0.88426 1.22371 0.99534 0.80843 0.97032 1.86567 1.69815 1.23021 1.57646 1.22561 1.01046 0.88776 0.94057 1.23508 0.94036 1.03370 1.02628 1.23026 0.94640 0.99809 1.05808 0.93922 0.92137 0.94936 0.92349 0.93615 0.92752 0.93277 0.89670 0.94496 0.93573 0.79002 0.86270 0.86646 0.90611 0.90323 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.69 37.16 0.36 -2.19 16 2 C -0.12 -2.64 4.80 -26.73 -0.13 -2.77 16 3 C 0.17 4.02 0.88 -68.86 -0.06 3.96 16 4 H 0.04 1.03 5.20 -51.93 -0.27 0.76 16 5 C -0.53 -14.31 6.44 -34.44 -0.22 -14.53 16 6 H 0.08 2.31 6.62 -52.49 -0.35 1.96 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 9 Si 0.88 21.81 24.38 -169.99 -4.14 17.67 16 10 H -0.28 -6.76 6.87 56.52 0.39 -6.37 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.33 6.53 56.52 0.37 -5.96 16 13 N -0.50 -10.17 3.92 -220.10 -0.86 -11.04 16 14 C 0.06 1.22 4.52 -3.83 -0.02 1.20 16 15 C 0.08 1.21 7.35 37.16 0.27 1.48 16 16 O -0.57 -8.43 10.80 -35.23 -0.38 -8.81 16 17 C 0.05 0.91 5.13 -67.72 -0.35 0.56 16 18 C -0.20 -4.12 8.80 -26.69 -0.23 -4.36 16 19 C -0.19 -3.57 10.24 -26.69 -0.27 -3.85 16 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 21 H 0.06 1.05 7.78 -51.93 -0.40 0.65 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 1.23 6.30 -51.93 -0.33 0.90 16 24 H 0.05 1.05 3.26 -51.93 -0.17 0.88 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.05 1.08 6.75 -51.93 -0.35 0.73 16 27 H 0.09 1.64 5.97 -51.93 -0.31 1.33 16 28 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.36 3.57 9.12 45.56 0.42 3.99 16 31 H 0.12 2.42 5.64 -51.93 -0.29 2.12 16 32 H 0.12 2.74 5.11 -51.93 -0.27 2.47 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 263.90 15.07 3.98 3.98 Total: -1.00 -29.83 263.90 -5.85 -35.68 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.46 Total: 7.35 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -0.75 Total: -18.53 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: -0.09 Total: -37.34 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: -0.38 Total: -8.81 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.14 Total: 17.67 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.83 -5.85 -35.68 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042479239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.345 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds