Wall clock time and date at job start Mon Mar 30 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47138 * 2 1 4 4 H 1.08997 * 109.47242 * 59.59579 * 3 2 1 5 5 C 1.50702 * 109.47034 * 179.59907 * 3 2 1 6 6 H 1.07997 * 120.00507 * 119.99964 * 5 3 2 7 7 C 1.37876 * 119.99784 * 299.99645 * 5 3 2 8 8 N 1.31521 * 120.00201 * 179.97438 * 7 5 3 9 9 Si 1.86806 * 120.00097 * 0.02562 * 7 5 3 10 10 H 1.48500 * 109.46792 * 89.99848 * 9 7 5 11 11 H 1.48496 * 109.47046 * 209.99871 * 9 7 5 12 12 H 1.48498 * 109.46998 * 330.00097 * 9 7 5 13 13 N 1.46905 * 109.47166 * 299.59180 * 3 2 1 14 14 C 1.46899 * 111.00258 * 292.73967 * 13 3 2 15 15 C 1.52998 * 109.47089 * 162.35545 * 14 13 3 16 16 O 1.42901 * 109.47365 * 66.70908 * 15 14 13 17 17 C 1.46895 * 110.99803 * 168.77701 * 13 3 2 18 18 C 1.52998 * 117.50049 * 355.40758 * 17 13 3 19 19 C 1.53001 * 117.50106 * 286.74304 * 17 13 3 20 20 H 1.08991 * 109.46990 * 305.03798 * 1 2 3 21 21 H 1.09007 * 109.46301 * 65.03424 * 1 2 3 22 22 H 1.08997 * 109.47348 * 185.03321 * 1 2 3 23 23 H 1.09004 * 109.46919 * 239.99771 * 2 1 3 24 24 H 1.08996 * 109.46894 * 119.99939 * 2 1 3 25 25 H 0.96997 * 120.00077 * 179.97438 * 8 7 5 26 26 H 1.09004 * 109.46433 * 282.35161 * 14 13 3 27 27 H 1.08996 * 109.47457 * 42.34562 * 14 13 3 28 28 H 1.09004 * 109.46818 * 186.70870 * 15 14 13 29 29 H 1.09000 * 109.47022 * 306.70258 * 15 14 13 30 30 H 0.96696 * 113.99617 * 184.98680 * 16 15 14 31 31 H 1.09005 * 115.54645 * 141.07428 * 17 13 3 32 32 H 1.09000 * 117.49909 * 359.97438 * 18 17 13 33 33 H 1.09005 * 117.49903 * 145.02000 * 18 17 13 34 34 H 1.09001 * 117.49840 * 214.97957 * 19 17 13 35 35 H 1.08992 * 117.49909 * 0.02562 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6708 1.9584 0.8863 5 6 3.5470 1.4425 0.0099 6 1 4.0924 1.9082 -0.7975 7 6 4.2295 0.8479 1.0500 8 7 5.5447 0.8474 1.0585 9 14 3.2862 0.0417 2.4464 10 1 3.0414 -1.3859 2.1189 11 1 4.0802 0.1335 3.6979 12 1 1.9872 0.7368 2.6322 13 7 1.5584 2.1321 -1.2044 14 6 2.1739 1.5706 -2.4143 15 6 1.3559 1.9813 -3.6402 16 8 1.4560 3.3944 -3.8281 17 6 1.7986 3.5785 -1.1142 18 6 2.3767 4.1184 0.1955 19 6 0.9121 4.3839 -0.1621 20 1 -0.3633 0.5900 0.8414 21 1 -0.3632 0.4338 -0.9317 22 1 -0.3634 -1.0237 0.0902 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 6.0248 0.4294 1.7904 26 1 3.1915 1.9487 -2.5131 27 1 2.1960 0.4834 -2.3396 28 1 1.7410 1.4693 -4.5221 29 1 0.3117 1.7080 -3.4885 30 1 0.9010 3.7364 -4.5423 31 1 2.1121 4.0616 -2.0397 32 1 2.5784 3.4004 0.9904 33 1 3.0702 4.9570 0.1317 34 1 0.6427 5.3969 -0.4610 35 1 0.1510 3.8404 0.3976 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042479239.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:00 Heat of formation + Delta-G solvation = -32.142724 kcal Electronic energy + Delta-G solvation = -15544.674620 eV Core-core repulsion = 13157.249219 eV Total energy + Delta-G solvation = -2387.425401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.21997 -37.44342 -36.15401 -34.23677 -33.03122 -29.90463 -28.12519 -24.56116 -23.31604 -23.08483 -22.45318 -20.15408 -18.60321 -18.30243 -17.37914 -16.95036 -16.16229 -15.51971 -14.98105 -14.71847 -14.61816 -14.18756 -13.62896 -13.41906 -13.27214 -13.18193 -12.68084 -12.41631 -12.36417 -11.94582 -11.73481 -11.69875 -11.36950 -11.17840 -11.00364 -10.93276 -10.64835 -10.51222 -8.72610 -8.28306 -6.29606 1.27728 1.33876 1.43060 2.30750 3.02472 3.06739 3.47017 3.62899 4.13316 4.29337 4.34727 4.41899 4.49758 4.54041 4.55505 4.62749 4.76764 4.90377 4.92390 4.95422 5.14797 5.21524 5.23620 5.27237 5.41016 5.48981 5.51799 5.54706 5.64638 6.22834 6.44033 6.59778 6.77946 7.11336 7.36274 8.88438 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.029238 B = 0.012375 C = 0.011686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.420421 B = 2262.159153 C = 2395.475479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.125 4.125 3 C 0.180 3.820 4 H 0.032 0.968 5 C -0.516 4.516 6 H 0.034 0.966 7 C 0.016 3.984 8 N -0.949 5.949 9 Si 0.941 3.059 10 H -0.267 1.267 11 H -0.304 1.304 12 H -0.250 1.250 13 N -0.484 5.484 14 C 0.061 3.939 15 C 0.092 3.908 16 O -0.585 6.585 17 C 0.032 3.968 18 C -0.220 4.220 19 C -0.159 4.159 20 H 0.042 0.958 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.033 0.967 25 H 0.262 0.738 26 H 0.009 0.991 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.389 0.611 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.398 1.756 -6.377 14.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.163 4.163 3 C 0.072 3.928 4 H 0.049 0.951 5 C -0.555 4.555 6 H 0.052 0.948 7 C -0.181 4.181 8 N -0.590 5.590 9 Si 0.769 3.231 10 H -0.193 1.193 11 H -0.232 1.232 12 H -0.174 1.174 13 N -0.205 5.205 14 C -0.068 4.068 15 C 0.015 3.985 16 O -0.393 6.393 17 C -0.077 4.077 18 C -0.259 4.259 19 C -0.197 4.197 20 H 0.061 0.939 21 H 0.088 0.912 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.071 0.929 26 H 0.027 0.973 27 H 0.100 0.900 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.239 0.761 31 H 0.138 0.862 32 H 0.102 0.898 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.364 1.549 -5.849 13.765 hybrid contribution 1.143 -0.292 0.557 1.304 sum -11.221 1.257 -5.292 12.470 Atomic orbital electron populations 1.21606 0.94130 1.00819 1.02269 1.21901 0.96943 0.97539 0.99898 1.19741 0.91218 0.91511 0.90318 0.95056 1.21780 0.92109 1.34744 1.06906 0.94776 1.25736 0.95255 0.96687 1.00444 1.70064 1.08318 1.46856 1.33715 0.85973 0.79114 0.79780 0.78261 1.19282 1.23230 1.17366 1.62217 1.54976 1.01169 1.02140 1.22066 0.95229 0.99450 0.90025 1.22168 0.99524 0.81361 0.95493 1.86480 1.70891 1.22788 1.59182 1.22707 1.02259 0.88865 0.93908 1.23380 0.96795 1.03349 1.02346 1.23055 0.92518 1.00864 1.03213 0.93912 0.91165 0.92462 0.92348 0.94877 0.92883 0.97269 0.90004 0.92183 0.91846 0.76098 0.86181 0.89810 0.90383 0.87262 0.89552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 9.69 71.98 0.70 -3.59 16 2 C -0.13 -5.15 4.80 30.60 0.15 -5.01 16 3 C 0.18 8.24 0.88 44.17 0.04 8.28 16 4 H 0.03 1.53 5.20 -2.39 -0.01 1.52 16 5 C -0.52 -28.67 6.44 25.60 0.16 -28.50 16 6 H 0.03 2.16 6.62 -2.91 -0.02 2.14 16 7 C 0.02 0.93 5.45 84.65 0.46 1.39 16 8 N -0.95 -59.55 13.96 21.45 0.30 -59.25 16 9 Si 0.94 45.39 24.38 68.60 1.67 47.06 16 10 H -0.27 -12.25 6.87 99.48 0.68 -11.57 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 12 H -0.25 -11.29 6.53 99.48 0.65 -10.64 16 13 N -0.48 -19.37 3.92 -850.27 -3.34 -22.71 16 14 C 0.06 2.31 4.52 86.30 0.39 2.70 16 15 C 0.09 2.55 7.35 71.98 0.53 3.08 16 16 O -0.58 -15.95 10.80 -148.98 -1.61 -17.56 16 17 C 0.03 1.26 5.13 44.92 0.23 1.49 16 18 C -0.22 -9.22 8.80 30.62 0.27 -8.95 16 19 C -0.16 -5.42 10.24 30.62 0.31 -5.10 16 20 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.07 2.16 7.78 -2.38 -0.02 2.14 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.06 2.38 6.30 -2.39 -0.02 2.36 16 24 H 0.03 1.45 3.26 -2.39 -0.01 1.44 16 25 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.01 0.41 6.75 -2.38 -0.02 0.39 16 27 H 0.08 3.11 5.97 -2.39 -0.01 3.10 16 28 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.39 6.31 9.12 -74.06 -0.68 5.64 16 31 H 0.12 4.76 5.64 -2.38 -0.01 4.75 16 32 H 0.08 4.06 5.11 -2.39 -0.01 4.05 16 33 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 34 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 35 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -66.28 263.90 0.60 -65.69 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: 0.33 Total: 20.99 kcal Atomic # 6 Polarization: -37.45 SS G_CDS: 3.24 Total: -34.21 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -3.04 Total: -81.96 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -1.61 Total: -17.56 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.06 kcal Total: -66.28 0.60 -65.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042479239.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.543 kcal (2) G-P(sol) polarization free energy of solvation -66.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds