Wall clock time and date at job start Mon Mar 30 2020 03:32:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47477 * 2 1 4 4 H 1.08998 * 109.47225 * 54.53577 * 3 2 1 5 5 C 1.50699 * 109.46981 * 294.53729 * 3 2 1 6 6 H 1.08000 * 120.00321 * 275.72783 * 5 3 2 7 7 C 1.37879 * 119.99982 * 95.73289 * 5 3 2 8 8 N 1.31517 * 119.99846 * 8.62913 * 7 5 3 9 9 Si 1.86796 * 120.00095 * 188.63646 * 7 5 3 10 10 H 1.48507 * 109.47452 * 59.99672 * 9 7 5 11 11 H 1.48501 * 109.47254 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47249 * 299.99782 * 9 7 5 13 13 N 1.46905 * 109.47594 * 174.53824 * 3 2 1 14 14 C 1.46900 * 110.99841 * 292.80658 * 13 3 2 15 15 C 1.53000 * 109.47205 * 285.33630 * 14 13 3 16 16 O 1.42898 * 109.47062 * 67.11630 * 15 14 13 17 17 C 1.46898 * 110.99681 * 56.75830 * 13 3 2 18 18 C 1.53000 * 117.51496 * 104.31796 * 17 13 3 19 19 C 1.52998 * 60.00211 * 107.47874 * 18 17 13 20 20 H 1.08996 * 109.47168 * 56.39668 * 1 2 3 21 21 H 1.09002 * 109.46901 * 176.40001 * 1 2 3 22 22 H 1.09006 * 109.46573 * 296.39468 * 1 2 3 23 23 H 1.09002 * 109.47077 * 239.99873 * 2 1 3 24 24 H 1.09000 * 109.47079 * 120.00303 * 2 1 3 25 25 H 0.97003 * 119.99413 * 179.97438 * 8 7 5 26 26 H 1.09002 * 109.47114 * 45.33682 * 14 13 3 27 27 H 1.08993 * 109.47084 * 165.33533 * 14 13 3 28 28 H 1.08994 * 109.47364 * 187.11138 * 15 14 13 29 29 H 1.08999 * 109.46743 * 307.11530 * 15 14 13 30 30 H 0.96700 * 114.00359 * 180.02562 * 16 15 14 31 31 H 1.08999 * 115.55348 * 318.61648 * 17 13 3 32 32 H 1.09007 * 117.49699 * 214.96475 * 18 17 13 33 33 H 1.08998 * 117.50207 * 359.97438 * 18 17 13 34 34 H 1.08996 * 117.50020 * 252.51160 * 19 18 17 35 35 H 1.09001 * 117.50246 * 107.48815 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5991 1.9837 0.8370 5 6 1.6512 2.1127 -1.2925 6 1 2.2685 1.9920 -2.1705 7 6 0.5074 2.8802 -1.3542 8 7 -0.1516 3.1678 -0.2530 9 14 -0.1062 3.5111 -3.0018 10 1 -0.3972 2.3611 -3.8952 11 1 -1.3447 4.3047 -2.7979 12 1 0.9352 4.3689 -3.6225 13 7 3.5032 1.4445 0.1318 14 6 3.9133 0.9541 1.4544 15 6 3.6429 2.0331 2.5049 16 8 2.2332 2.2235 2.6403 17 6 4.1293 0.6575 -0.9389 18 6 4.7999 1.4245 -2.0803 19 6 5.6553 0.6946 -1.0429 20 1 -0.3633 0.5687 -0.8559 21 1 -0.3633 -1.0257 -0.0645 22 1 -0.3633 0.4569 0.9206 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 -0.9561 3.7081 -0.2965 26 1 3.3459 0.0566 1.7011 27 1 4.9774 0.7188 1.4407 28 1 4.0610 1.7214 3.4620 29 1 4.1076 2.9684 2.1928 30 1 1.9877 2.8954 3.2910 31 1 3.6305 -0.2794 -1.1869 32 1 4.7423 0.9922 -3.0793 33 1 4.7762 2.5134 -2.0372 34 1 6.1946 1.3032 -0.3171 35 1 6.1605 -0.2180 -1.3593 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042479241.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:02 Heat of formation + Delta-G solvation = -38.239703 kcal Electronic energy + Delta-G solvation = -15477.776129 eV Core-core repulsion = 13090.086343 eV Total energy + Delta-G solvation = -2387.689786 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.82223 -37.38152 -36.12930 -34.04163 -32.61778 -29.74853 -27.49651 -24.79186 -23.43727 -22.74048 -22.50155 -19.97228 -18.63181 -17.82826 -16.98925 -16.48946 -16.15530 -15.46089 -15.13336 -14.65659 -14.35872 -14.19676 -13.50750 -13.21687 -12.92947 -12.72132 -12.60093 -12.45429 -12.19301 -12.09033 -11.95472 -11.72355 -11.30346 -10.94744 -10.89244 -10.66867 -10.51309 -10.03660 -8.63431 -7.92933 -5.95664 1.43644 1.44509 1.50908 2.51760 3.12546 3.21330 3.51893 3.70212 4.21197 4.31417 4.39274 4.40752 4.53118 4.56074 4.62479 4.76815 4.85799 4.93424 4.93994 5.01514 5.09582 5.20739 5.27582 5.40591 5.45970 5.63875 5.77870 5.90922 6.07679 6.38903 6.88108 6.98996 7.12291 7.29186 7.66014 9.13511 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.013603 C = 0.010895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.503584 B = 2057.810297 C = 2569.273971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.131 4.131 3 C 0.190 3.810 4 H 0.096 0.904 5 C -0.500 4.500 6 H 0.046 0.954 7 C 0.026 3.974 8 N -0.908 5.908 9 Si 0.931 3.069 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.513 5.513 14 C 0.046 3.954 15 C 0.084 3.916 16 O -0.576 6.576 17 C 0.004 3.996 18 C -0.167 4.167 19 C -0.157 4.157 20 H 0.041 0.959 21 H 0.040 0.960 22 H 0.031 0.969 23 H 0.033 0.967 24 H 0.031 0.969 25 H 0.254 0.746 26 H 0.024 0.976 27 H 0.094 0.906 28 H 0.069 0.931 29 H 0.040 0.960 30 H 0.379 0.621 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.327 -4.073 3.259 9.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.171 4.171 3 C 0.084 3.916 4 H 0.113 0.887 5 C -0.539 4.539 6 H 0.064 0.936 7 C -0.173 4.173 8 N -0.547 5.547 9 Si 0.759 3.241 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.236 5.236 14 C -0.082 4.082 15 C 0.006 3.994 16 O -0.383 6.383 17 C -0.105 4.105 18 C -0.205 4.205 19 C -0.194 4.194 20 H 0.060 0.940 21 H 0.059 0.941 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.042 0.958 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.058 0.942 30 H 0.227 0.773 31 H 0.085 0.915 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.328 -3.940 2.834 9.639 hybrid contribution -0.977 0.126 -0.481 1.096 sum 7.351 -3.814 2.353 8.609 Atomic orbital electron populations 1.21302 0.96359 0.98235 1.00897 1.22068 0.96440 1.01320 0.97227 1.19865 0.81942 0.90892 0.98903 0.88673 1.21279 1.06959 1.29194 0.96439 0.93604 1.25436 0.97685 0.96074 0.98090 1.70088 1.18308 1.39072 1.27277 0.86049 0.77572 0.78291 0.82230 1.20247 1.21347 1.20366 1.62363 1.11004 1.50220 0.99995 1.22259 1.00265 0.95704 0.89964 1.22218 0.81863 0.98010 0.97260 1.86725 1.23476 1.63153 1.64955 1.22266 0.93861 0.96708 0.97662 1.22841 1.04398 0.99000 0.94222 1.23084 0.91720 1.02656 1.01960 0.94032 0.94117 0.95025 0.94854 0.95049 0.93651 0.95763 0.88741 0.91333 0.94176 0.77286 0.91476 0.88953 0.90478 0.88380 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.21 9.40 71.98 0.68 -4.53 16 2 C -0.13 -6.15 4.78 30.59 0.15 -6.00 16 3 C 0.19 9.59 1.82 44.17 0.08 9.67 16 4 H 0.10 5.32 4.16 -2.39 -0.01 5.31 16 5 C -0.50 -27.68 7.55 25.60 0.19 -27.48 16 6 H 0.05 2.56 6.33 -2.91 -0.02 2.54 16 7 C 0.03 1.47 4.14 84.65 0.35 1.82 16 8 N -0.91 -52.62 12.38 21.45 0.27 -52.36 16 9 Si 0.93 44.78 29.55 68.60 2.03 46.81 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 N -0.51 -22.17 4.54 -850.28 -3.86 -26.03 16 14 C 0.05 1.65 5.37 86.30 0.46 2.11 16 15 C 0.08 2.79 7.35 71.98 0.53 3.32 16 16 O -0.58 -22.56 10.69 -148.98 -1.59 -24.16 16 17 C 0.00 0.16 3.98 44.92 0.18 0.34 16 18 C -0.17 -5.95 9.42 30.59 0.29 -5.66 16 19 C -0.16 -4.61 9.59 30.60 0.29 -4.32 16 20 H 0.04 2.15 6.28 -2.39 -0.01 2.14 16 21 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.03 1.55 8.14 -2.38 -0.02 1.53 16 23 H 0.03 1.54 6.37 -2.39 -0.02 1.52 16 24 H 0.03 1.39 6.15 -2.39 -0.01 1.38 16 25 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.02 0.93 5.95 -2.39 -0.01 0.91 16 27 H 0.09 2.81 6.91 -2.39 -0.02 2.79 16 28 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.38 11.43 9.12 -74.06 -0.68 10.76 16 31 H 0.07 2.73 6.05 -2.39 -0.01 2.72 16 32 H 0.09 3.01 8.14 -2.38 -0.02 2.99 16 33 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.10 2.73 7.79 -2.39 -0.02 2.71 16 35 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -63.60 272.29 0.44 -63.16 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: 0.40 Total: 23.31 kcal Atomic # 6 Polarization: -33.94 SS G_CDS: 3.20 Total: -30.74 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -3.59 Total: -78.39 kcal Atomic # 8 Polarization: -22.56 SS G_CDS: -1.59 Total: -24.16 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.60 0.44 -63.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042479241.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.917 kcal (2) G-P(sol) polarization free energy of solvation -63.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds