Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47161 * 2 1 4 4 C 1.53003 * 109.47413 * 239.99958 * 2 1 3 5 5 O 1.42902 * 109.46894 * 59.99963 * 4 2 1 6 6 N 1.46902 * 109.47190 * 119.99751 * 2 1 3 7 7 C 1.46896 * 111.00066 * 300.00442 * 6 2 1 8 8 C 1.53006 * 109.47066 * 184.94537 * 7 6 2 9 9 C 1.50699 * 115.54652 * 294.79697 * 8 7 6 10 10 H 1.07998 * 120.00265 * 95.20499 * 9 8 7 11 11 C 1.37881 * 119.99922 * 274.92628 * 9 8 7 12 12 N 1.31519 * 119.99772 * 355.41651 * 11 9 8 13 13 Si 1.86797 * 119.99969 * 175.42446 * 11 9 8 14 14 H 1.48499 * 109.47181 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47232 * 120.00108 * 13 11 9 16 16 H 1.48498 * 109.46755 * 239.99858 * 13 11 9 17 17 C 1.52997 * 117.49890 * 80.46826 * 8 7 6 18 18 C 1.53003 * 117.49881 * 149.12937 * 8 7 6 19 19 H 1.09002 * 109.46948 * 300.00014 * 1 2 3 20 20 H 1.08999 * 109.46773 * 60.00166 * 1 2 3 21 21 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47178 * 179.97438 * 3 2 1 23 23 H 1.08990 * 109.46987 * 299.99834 * 3 2 1 24 24 H 1.09002 * 109.47201 * 60.00141 * 3 2 1 25 25 H 1.09000 * 109.47259 * 180.02562 * 4 2 1 26 26 H 1.09005 * 109.46697 * 299.99864 * 4 2 1 27 27 H 0.96692 * 113.99553 * 180.02562 * 5 4 2 28 28 H 1.00905 * 110.99994 * 63.95645 * 6 2 1 29 29 H 1.08994 * 109.47796 * 64.94323 * 7 6 2 30 30 H 1.09004 * 109.47287 * 304.93781 * 7 6 2 31 31 H 0.97003 * 119.99315 * 185.00091 * 12 11 9 32 32 H 1.09005 * 117.49389 * 215.00114 * 17 8 7 33 33 H 1.09001 * 117.50001 * 0.02562 * 17 8 7 34 34 H 1.09000 * 117.49729 * 359.96994 * 18 8 7 35 35 H 1.08993 * 117.49913 * 144.97510 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 7 2.0197 -0.6924 1.1995 7 6 1.5486 -0.0264 2.4211 8 6 2.1767 -0.6991 3.6434 9 6 1.7672 -2.1300 3.8797 10 1 2.3820 -2.9362 3.5074 11 6 0.6107 -2.4101 4.5761 12 7 -0.0874 -1.4326 5.1117 13 14 0.0356 -4.1779 4.7592 14 1 0.9900 -5.0829 4.0698 15 1 -0.0290 -4.5308 6.2002 16 1 -1.3118 -4.3253 4.1526 17 6 3.6090 -0.3045 4.0089 18 6 2.4390 0.1729 4.8729 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6767 1.9564 0.8900 25 1 3.1301 -0.7216 -1.2490 26 1 1.6767 -1.7490 -1.2492 27 1 1.8488 -0.4513 -3.2471 28 1 1.7503 -1.6648 1.1910 29 1 0.4631 -0.1036 2.4816 30 1 1.8373 1.0244 2.3964 31 1 -0.8602 -1.6339 5.6624 32 1 4.2552 -1.0800 4.4204 33 1 4.1037 0.4347 3.3789 34 1 2.1646 1.2260 4.8108 35 1 2.3152 -0.2882 5.8526 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083853775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -32.619566 kcal Electronic energy + Delta-G solvation = -14985.904515 eV Core-core repulsion = 12598.458437 eV Total energy + Delta-G solvation = -2387.446078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.38826 -36.53961 -35.00210 -31.87719 -30.00922 -26.90901 -26.42263 -25.54274 -23.77631 -20.90070 -19.03920 -18.63821 -17.29817 -16.00887 -15.01820 -14.70236 -14.56759 -14.09530 -13.80844 -13.42999 -12.65747 -12.45325 -12.15799 -12.00209 -11.57236 -11.19979 -11.03806 -10.93088 -10.85003 -10.66789 -10.39690 -10.13319 -10.02693 -9.79870 -9.28919 -8.78201 -8.36956 -8.01839 -7.46511 -5.99274 -4.06464 3.27219 3.36352 3.39854 4.24088 4.41317 5.08234 5.25307 5.28733 5.29648 5.54053 5.67934 5.76821 5.92599 6.08585 6.19323 6.22476 6.32655 6.41131 6.52931 6.55321 6.64712 6.69721 6.91228 6.95339 6.99907 7.25139 7.55799 7.65358 7.72830 7.90813 8.02980 8.29204 8.53539 8.97387 9.59097 11.07800 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030395 B = 0.009519 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.975177 B = 2940.800313 C = 3423.456068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 C -0.131 4.131 4 C 0.090 3.910 5 O -0.572 6.572 6 N -0.670 5.670 7 C 0.105 3.895 8 C 0.046 3.954 9 C -0.491 4.491 10 H 0.060 0.940 11 C 0.068 3.932 12 N -0.879 5.879 13 Si 0.886 3.114 14 H -0.272 1.272 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.201 4.201 18 C -0.156 4.156 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.049 0.951 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.042 0.958 27 H 0.374 0.626 28 H 0.346 0.654 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.258 0.742 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 2.148 -9.988 10.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.017 3.983 3 C -0.188 4.188 4 C 0.011 3.989 5 O -0.376 6.376 6 N -0.302 5.302 7 C -0.023 4.023 8 C 0.046 3.954 9 C -0.529 4.529 10 H 0.078 0.922 11 C -0.134 4.134 12 N -0.516 5.516 13 Si 0.714 3.286 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.239 4.239 18 C -0.194 4.194 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.219 0.781 28 H 0.164 0.836 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.508 2.902 -9.482 10.228 hybrid contribution -1.126 -1.629 -0.077 1.982 sum 1.382 1.274 -9.558 9.741 Atomic orbital electron populations 1.22448 0.97210 1.01719 1.01941 1.20801 0.92524 0.94904 0.90075 1.21773 1.01051 0.94822 1.01203 1.22104 0.97638 0.94266 0.84848 1.86440 1.77715 1.57499 1.15955 1.60541 1.62767 1.06649 1.00259 1.21511 0.97340 0.95210 0.88259 1.18771 0.91474 0.94506 0.90698 1.20512 1.06366 0.90123 1.35892 0.92209 1.25011 0.96328 0.96603 0.95480 1.70023 1.18533 1.30771 1.32306 0.86641 0.78651 0.85558 0.77798 1.19687 1.21125 1.21142 1.22869 0.92982 1.02786 1.05242 1.22495 1.02260 0.97218 0.97464 0.92217 0.92377 0.93153 0.92550 0.92471 0.92663 0.93007 0.94017 0.78059 0.83557 0.94695 0.93759 0.93227 0.91013 0.91797 0.92402 0.90034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.11 1.81 0.80 -131.60 -0.10 1.71 16 3 C -0.13 -2.10 8.10 37.16 0.30 -1.80 16 4 C 0.09 1.27 6.17 37.16 0.23 1.50 16 5 O -0.57 -7.33 12.31 -35.23 -0.43 -7.76 16 6 N -0.67 -13.05 6.06 -99.96 -0.61 -13.65 16 7 C 0.11 2.34 4.73 -3.82 -0.02 2.32 16 8 C 0.05 1.13 1.65 -155.66 -0.26 0.88 16 9 C -0.49 -13.12 8.32 -34.44 -0.29 -13.41 16 10 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 11 C 0.07 1.86 5.43 -17.82 -0.10 1.76 16 12 N -0.88 -24.76 12.65 55.43 0.70 -24.06 16 13 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 17 C -0.20 -4.56 9.96 -26.69 -0.27 -4.83 16 18 C -0.16 -3.77 9.14 -26.69 -0.24 -4.02 16 19 H 0.06 1.09 6.52 -51.93 -0.34 0.75 16 20 H 0.06 0.92 7.68 -51.93 -0.40 0.53 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 23 H 0.06 0.86 7.68 -51.93 -0.40 0.46 16 24 H 0.05 0.92 6.30 -51.93 -0.33 0.59 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.37 2.95 9.12 45.56 0.42 3.36 16 28 H 0.35 7.02 8.28 -39.29 -0.33 6.70 16 29 H 0.03 0.85 6.58 -51.93 -0.34 0.51 16 30 H 0.04 0.95 6.00 -51.93 -0.31 0.64 16 31 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 32 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 33 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.08 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 283.71 15.07 4.28 4.28 Total: -1.00 -28.58 283.71 -6.48 -35.06 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.95 Total: 8.79 kcal Atomic # 6 Polarization: -18.11 SS G_CDS: -0.44 Total: -18.55 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.10 Total: -37.72 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: -0.43 Total: -7.76 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.58 -6.48 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.441 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds