Wall clock time and date at job start Mon Mar 30 2020 03:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47161 * 2 1 4 4 C 1.53003 * 109.47413 * 239.99958 * 2 1 3 5 5 O 1.42902 * 109.46894 * 59.99963 * 4 2 1 6 6 N 1.46902 * 109.47190 * 119.99751 * 2 1 3 7 7 C 1.46896 * 111.00066 * 300.00442 * 6 2 1 8 8 C 1.53006 * 109.47066 * 184.94537 * 7 6 2 9 9 C 1.50699 * 115.54652 * 294.79697 * 8 7 6 10 10 H 1.07998 * 120.00265 * 95.20499 * 9 8 7 11 11 C 1.37881 * 119.99922 * 274.92628 * 9 8 7 12 12 N 1.31519 * 119.99772 * 355.41651 * 11 9 8 13 13 Si 1.86797 * 119.99969 * 175.42446 * 11 9 8 14 14 H 1.48499 * 109.47181 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47232 * 120.00108 * 13 11 9 16 16 H 1.48498 * 109.46755 * 239.99858 * 13 11 9 17 17 C 1.52997 * 117.49890 * 80.46826 * 8 7 6 18 18 C 1.53003 * 117.49881 * 149.12937 * 8 7 6 19 19 H 1.09002 * 109.46948 * 300.00014 * 1 2 3 20 20 H 1.08999 * 109.46773 * 60.00166 * 1 2 3 21 21 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47178 * 179.97438 * 3 2 1 23 23 H 1.08990 * 109.46987 * 299.99834 * 3 2 1 24 24 H 1.09002 * 109.47201 * 60.00141 * 3 2 1 25 25 H 1.09000 * 109.47259 * 180.02562 * 4 2 1 26 26 H 1.09005 * 109.46697 * 299.99864 * 4 2 1 27 27 H 0.96692 * 113.99553 * 180.02562 * 5 4 2 28 28 H 1.00905 * 110.99994 * 63.95645 * 6 2 1 29 29 H 1.08994 * 109.47796 * 64.94323 * 7 6 2 30 30 H 1.09004 * 109.47287 * 304.93781 * 7 6 2 31 31 H 0.97003 * 119.99315 * 185.00091 * 12 11 9 32 32 H 1.09005 * 117.49389 * 215.00114 * 17 8 7 33 33 H 1.09001 * 117.50001 * 0.02562 * 17 8 7 34 34 H 1.09000 * 117.49729 * 359.96994 * 18 8 7 35 35 H 1.08993 * 117.49913 * 144.97510 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 1.5637 -0.0476 -2.4160 6 7 2.0197 -0.6924 1.1995 7 6 1.5486 -0.0264 2.4211 8 6 2.1767 -0.6991 3.6434 9 6 1.7672 -2.1300 3.8797 10 1 2.3820 -2.9362 3.5074 11 6 0.6107 -2.4101 4.5761 12 7 -0.0874 -1.4326 5.1117 13 14 0.0356 -4.1779 4.7592 14 1 0.9900 -5.0829 4.0698 15 1 -0.0290 -4.5308 6.2002 16 1 -1.3118 -4.3253 4.1526 17 6 3.6090 -0.3045 4.0089 18 6 2.4390 0.1729 4.8729 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1300 1.4425 0.0005 23 1 1.6767 1.9563 -0.8899 24 1 1.6767 1.9564 0.8900 25 1 3.1301 -0.7216 -1.2490 26 1 1.6767 -1.7490 -1.2492 27 1 1.8488 -0.4513 -3.2471 28 1 1.7503 -1.6648 1.1910 29 1 0.4631 -0.1036 2.4816 30 1 1.8373 1.0244 2.3964 31 1 -0.8602 -1.6339 5.6624 32 1 4.2552 -1.0800 4.4204 33 1 4.1037 0.4347 3.3789 34 1 2.1646 1.2260 4.8108 35 1 2.3152 -0.2882 5.8526 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853775.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:37 Heat of formation + Delta-G solvation = -52.933392 kcal Electronic energy + Delta-G solvation = -14986.785389 eV Core-core repulsion = 12598.458437 eV Total energy + Delta-G solvation = -2388.326952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79448 -38.14586 -36.33018 -33.93841 -31.52600 -28.23756 -27.80800 -27.49443 -25.36863 -22.79300 -20.95264 -20.00794 -18.34197 -17.94820 -16.65415 -16.46285 -15.88466 -15.66117 -15.42034 -14.92716 -14.42236 -13.83102 -13.56789 -13.40808 -13.33616 -12.90138 -12.86629 -12.61587 -12.51744 -12.21521 -12.06873 -11.93107 -11.41216 -11.19438 -10.82954 -10.75514 -10.36005 -9.90139 -9.09775 -8.05885 -6.18095 1.39440 1.43335 1.53293 2.43749 3.01668 3.21375 3.64284 3.80996 4.01187 4.12936 4.32914 4.38316 4.60405 4.64754 4.71260 4.75790 4.82025 4.83957 4.98958 5.03440 5.05520 5.10562 5.16508 5.31112 5.36899 5.40883 5.68894 5.73360 5.84560 6.38546 6.50411 6.65835 6.91704 6.98455 7.49984 9.00768 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.030395 B = 0.009519 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.975177 B = 2940.800313 C = 3423.456068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.102 3.898 3 C -0.125 4.125 4 C 0.099 3.901 5 O -0.581 6.581 6 N -0.666 5.666 7 C 0.123 3.877 8 C 0.023 3.977 9 C -0.499 4.499 10 H 0.054 0.946 11 C 0.023 3.977 12 N -0.909 5.909 13 Si 0.946 3.054 14 H -0.265 1.265 15 H -0.285 1.285 16 H -0.285 1.285 17 C -0.178 4.178 18 C -0.164 4.164 19 H 0.038 0.962 20 H 0.069 0.931 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.046 0.954 27 H 0.397 0.603 28 H 0.340 0.660 29 H 0.005 0.995 30 H 0.051 0.949 31 H 0.257 0.743 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.046 1.829 -11.453 11.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.010 3.990 3 C -0.183 4.183 4 C 0.021 3.979 5 O -0.388 6.388 6 N -0.297 5.297 7 C -0.007 4.007 8 C 0.023 3.977 9 C -0.537 4.537 10 H 0.072 0.928 11 C -0.177 4.177 12 N -0.547 5.547 13 Si 0.772 3.228 14 H -0.189 1.189 15 H -0.211 1.211 16 H -0.211 1.211 17 C -0.216 4.216 18 C -0.202 4.202 19 H 0.057 0.943 20 H 0.088 0.912 21 H 0.063 0.937 22 H 0.078 0.922 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.247 0.753 28 H 0.158 0.842 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.191 2.576 -10.979 11.720 hybrid contribution -1.313 -1.498 0.331 2.019 sum 1.878 1.078 -10.648 10.866 Atomic orbital electron populations 1.22369 0.97579 1.01201 1.01454 1.20959 0.92286 0.95507 0.90214 1.21722 1.01198 0.94203 1.01173 1.21870 0.97848 0.93968 0.84238 1.86375 1.77908 1.57844 1.16717 1.60513 1.62575 1.06277 1.00334 1.21194 0.95209 0.95533 0.88726 1.18951 0.93173 0.93948 0.91660 1.20734 1.06321 0.91162 1.35506 0.92800 1.25669 0.96518 1.00079 0.95421 1.70133 1.18939 1.32514 1.33092 0.85690 0.78094 0.81425 0.77546 1.18898 1.21141 1.21080 1.22840 0.92032 1.02618 1.04069 1.22398 1.03905 0.97533 0.96378 0.94263 0.91167 0.93697 0.92173 0.91291 0.93882 0.92289 0.93546 0.75333 0.84231 0.97714 0.93046 0.93399 0.91091 0.89687 0.91445 0.92487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.53 8.08 71.98 0.58 -4.95 16 2 C 0.10 3.23 0.80 3.53 0.00 3.23 16 3 C -0.13 -3.78 8.10 71.98 0.58 -3.20 16 4 C 0.10 2.55 6.17 71.98 0.44 2.99 16 5 O -0.58 -13.05 12.31 -148.98 -1.83 -14.88 16 6 N -0.67 -25.24 6.06 -470.17 -2.85 -28.09 16 7 C 0.12 5.42 4.73 86.31 0.41 5.82 16 8 C 0.02 1.14 1.65 -52.93 -0.09 1.05 16 9 C -0.50 -26.68 8.32 25.60 0.21 -26.47 16 10 H 0.05 2.88 7.82 -2.91 -0.02 2.86 16 11 C 0.02 1.25 5.43 84.65 0.46 1.71 16 12 N -0.91 -51.85 12.65 21.45 0.27 -51.58 16 13 Si 0.95 43.06 29.54 68.60 2.03 45.08 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 C -0.18 -7.85 9.96 30.62 0.30 -7.54 16 18 C -0.16 -7.92 9.14 30.62 0.28 -7.64 16 19 H 0.04 1.43 6.52 -2.39 -0.02 1.42 16 20 H 0.07 2.12 7.68 -2.39 -0.02 2.11 16 21 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.07 1.91 7.68 -2.39 -0.02 1.89 16 24 H 0.04 1.38 6.30 -2.39 -0.02 1.37 16 25 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.40 4.89 9.12 -74.06 -0.68 4.21 16 28 H 0.34 13.56 8.28 -89.69 -0.74 12.82 16 29 H 0.00 0.23 6.58 -2.39 -0.02 0.22 16 30 H 0.05 2.18 6.00 -2.39 -0.01 2.16 16 31 H 0.26 14.09 8.32 -92.71 -0.77 13.32 16 32 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 33 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 34 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.06 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -59.57 283.71 0.46 -59.11 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: -0.34 Total: 25.35 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.19 Total: -34.99 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.58 Total: -79.67 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: -1.83 Total: -14.88 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -59.57 0.46 -59.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853775.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.177 kcal (2) G-P(sol) polarization free energy of solvation -59.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds