Wall clock time and date at job start Mon Mar 30 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47164 * 2 1 4 4 H 1.09005 * 109.46617 * 179.53449 * 3 2 1 5 5 C 1.50700 * 109.47115 * 59.53389 * 3 2 1 6 6 H 1.07991 * 120.00340 * 240.00035 * 5 3 2 7 7 C 1.37873 * 119.99774 * 59.99937 * 5 3 2 8 8 N 1.31516 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46567 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47130 * 119.99659 * 9 7 5 12 12 H 1.48500 * 109.47123 * 240.00262 * 9 7 5 13 13 N 1.46899 * 109.47015 * 299.53117 * 3 2 1 14 14 C 1.47958 * 110.99825 * 187.48643 * 13 3 2 15 15 C 1.53929 * 86.18126 * 137.58629 * 14 13 3 16 16 O 1.42899 * 113.73303 * 90.63984 * 15 14 13 17 17 C 1.53001 * 113.73377 * 221.81720 * 15 14 13 18 18 C 1.53001 * 109.46900 * 178.10018 * 17 15 14 19 19 C 1.48294 * 111.01139 * 286.83881 * 13 3 2 20 20 H 1.09006 * 109.47287 * 63.92871 * 1 2 3 21 21 H 1.09001 * 109.47456 * 183.92733 * 1 2 3 22 22 H 1.09000 * 109.47185 * 303.93317 * 1 2 3 23 23 H 1.09002 * 109.46899 * 240.00381 * 2 1 3 24 24 H 1.08998 * 109.47280 * 120.00205 * 2 1 3 25 25 H 0.96998 * 120.00451 * 180.02562 * 8 7 5 26 26 H 1.09003 * 113.76176 * 23.26508 * 14 13 3 27 27 H 1.09003 * 113.76379 * 251.90314 * 14 13 3 28 28 H 0.96705 * 114.00229 * 181.90375 * 16 15 14 29 29 H 1.09003 * 109.47393 * 298.09762 * 17 15 14 30 30 H 1.08992 * 109.47053 * 58.10122 * 17 15 14 31 31 H 1.09002 * 109.47721 * 60.00177 * 18 17 15 32 32 H 1.09007 * 109.46945 * 179.97438 * 18 17 15 33 33 H 1.08997 * 109.47466 * 299.99680 * 18 17 15 34 34 H 1.09002 * 113.86050 * 108.14125 * 19 13 3 35 35 H 1.09001 * 113.75869 * 336.68590 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0083 5 6 1.5283 2.1562 1.2246 6 1 0.9082 3.0340 1.1185 7 6 1.8517 1.6885 2.4806 8 7 2.6064 0.6193 2.6100 9 14 1.2168 2.5728 3.9988 10 1 0.3941 3.7378 3.5850 11 1 0.3859 1.6412 4.8029 12 1 2.3653 3.0421 4.8148 13 7 1.5596 2.1317 -1.2051 14 6 2.1764 3.4706 -1.3315 15 6 2.3343 3.1433 -2.8273 16 8 1.2228 3.5537 -3.6262 17 6 3.6807 3.5734 -3.4130 18 6 3.7517 3.1611 -4.8847 19 6 2.2845 1.6623 -2.4106 20 1 -0.3634 0.4517 -0.9231 21 1 -0.3634 -1.0252 0.0704 22 1 -0.3633 0.5737 0.8526 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.8337 0.2900 3.4937 26 1 3.1236 3.5697 -0.8013 27 1 1.4881 4.2919 -1.1319 28 1 1.3049 3.3240 -4.5620 29 1 3.7825 4.6557 -3.3337 30 1 4.4875 3.0911 -2.8613 31 1 2.9448 3.6433 -5.4366 32 1 4.7108 3.4678 -5.3022 33 1 3.6500 2.0788 -4.9642 34 1 1.6825 1.0398 -3.0726 35 1 3.2633 1.2336 -2.1954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084359182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:36 Heat of formation + Delta-G solvation = -25.238590 kcal Electronic energy + Delta-G solvation = -15160.938740 eV Core-core repulsion = 12773.812725 eV Total energy + Delta-G solvation = -2387.126015 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.75236 -35.89529 -33.55277 -32.30088 -31.05673 -27.51696 -25.93439 -24.82245 -23.42631 -21.71283 -19.36407 -18.94876 -16.45543 -16.18455 -15.42688 -14.68116 -14.34384 -13.93602 -13.68352 -12.97288 -12.71693 -12.31239 -12.26748 -11.99637 -11.76992 -11.40998 -11.20284 -10.97611 -10.92873 -10.73246 -10.38969 -10.23327 -9.80265 -9.68428 -9.40662 -9.03017 -8.78643 -8.42963 -7.54659 -5.99368 -4.02936 3.30397 3.38614 3.43929 4.36184 4.45117 4.76876 4.94158 5.00750 5.24759 5.32803 5.50257 5.65512 5.94629 5.97453 6.09959 6.14658 6.25732 6.27042 6.42353 6.52512 6.61630 6.64467 6.83606 6.92050 7.19162 7.37174 7.53903 7.73118 7.84658 7.97811 8.06533 8.33370 8.52510 9.02809 9.61066 11.07163 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040402 B = 0.008772 C = 0.008199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.872345 B = 3191.256775 C = 3414.322057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.182 3.818 4 H 0.003 0.997 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.892 3.108 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.459 5.459 14 C 0.036 3.964 15 C 0.096 3.904 16 O -0.533 6.533 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.022 4.022 20 H 0.040 0.960 21 H 0.015 0.985 22 H 0.059 0.941 23 H 0.010 0.990 24 H 0.090 0.910 25 H 0.259 0.741 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.366 0.634 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.142 2.945 -10.875 11.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.020 0.980 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.182 5.182 14 C -0.093 4.093 15 C 0.054 3.946 16 O -0.338 6.338 17 C -0.183 4.183 18 C -0.212 4.212 19 C -0.151 4.151 20 H 0.059 0.941 21 H 0.034 0.966 22 H 0.078 0.922 23 H 0.029 0.971 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.213 0.787 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.287 2.973 -10.079 10.587 hybrid contribution 0.873 0.095 0.484 1.002 sum 2.160 3.068 -9.595 10.303 Atomic orbital electron populations 1.21467 0.97280 0.97552 1.01548 1.21440 0.95265 0.98000 0.99758 1.19834 0.93131 0.91854 0.87658 0.97967 1.21045 1.30931 1.11808 0.89635 0.92100 1.24905 0.95209 0.95090 0.98912 1.69888 1.37358 1.23008 1.22994 0.86521 0.78628 0.79796 0.83005 1.19718 1.21026 1.21177 1.68669 1.45392 1.01442 1.02678 1.23750 0.99332 0.96137 0.90065 1.22917 0.84957 0.94527 0.92167 1.86582 1.42664 1.82220 1.22305 1.22105 0.97805 1.01880 0.96489 1.21752 1.01645 1.01577 0.96259 1.24544 0.98134 0.95940 0.96499 0.94079 0.96579 0.92215 0.97145 0.89166 0.93095 0.90663 0.90065 0.78701 0.91347 0.90850 0.92674 0.92549 0.92429 0.90632 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.82 9.52 37.16 0.35 -2.47 16 2 C -0.11 -2.62 5.45 -26.73 -0.15 -2.77 16 3 C 0.18 4.61 1.35 -68.87 -0.09 4.52 16 4 H 0.00 0.08 7.69 -51.93 -0.40 -0.32 16 5 C -0.50 -13.62 6.87 -34.44 -0.24 -13.85 16 6 H 0.06 1.72 7.72 -52.49 -0.40 1.31 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.46 -10.21 5.30 -231.29 -1.23 -11.44 16 14 C 0.04 0.73 6.71 -2.76 -0.02 0.71 16 15 C 0.10 1.57 1.50 -89.69 -0.13 1.44 16 16 O -0.53 -8.61 13.45 -35.23 -0.47 -9.08 16 17 C -0.14 -1.88 5.62 -26.73 -0.15 -2.03 16 18 C -0.16 -1.58 9.42 37.16 0.35 -1.23 16 19 C -0.02 -0.40 6.62 -2.58 -0.02 -0.41 16 20 H 0.04 0.92 7.74 -51.93 -0.40 0.52 16 21 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 22 H 0.06 1.50 7.06 -51.93 -0.37 1.13 16 23 H 0.01 0.23 7.62 -51.93 -0.40 -0.17 16 24 H 0.09 2.45 6.08 -51.93 -0.32 2.14 16 25 H 0.26 7.04 8.31 -40.82 -0.34 6.71 16 26 H 0.08 1.52 7.79 -51.93 -0.40 1.11 16 27 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 28 H 0.37 4.28 7.09 45.56 0.32 4.60 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 31 H 0.05 0.50 6.75 -51.93 -0.35 0.15 16 32 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.06 1.16 7.59 -51.93 -0.39 0.76 16 LS Contribution 277.59 15.07 4.18 4.18 Total: -1.00 -29.63 277.59 -7.29 -36.92 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.20 Total: 2.23 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.19 Total: -14.54 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: -0.60 Total: -36.22 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.47 Total: -9.08 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.63 -7.29 -36.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084359182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.682 kcal (2) G-P(sol) polarization free energy of solvation -29.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds