Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47164 * 2 1 4 4 H 1.09005 * 109.46617 * 179.53449 * 3 2 1 5 5 C 1.50700 * 109.47115 * 59.53389 * 3 2 1 6 6 H 1.07991 * 120.00340 * 240.00035 * 5 3 2 7 7 C 1.37873 * 119.99774 * 59.99937 * 5 3 2 8 8 N 1.31516 * 120.00371 * 359.97438 * 7 5 3 9 9 Si 1.86808 * 120.00097 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46567 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47130 * 119.99659 * 9 7 5 12 12 H 1.48500 * 109.47123 * 240.00262 * 9 7 5 13 13 N 1.46899 * 109.47015 * 299.53117 * 3 2 1 14 14 C 1.47958 * 110.99825 * 187.48643 * 13 3 2 15 15 C 1.53929 * 86.18126 * 137.58629 * 14 13 3 16 16 O 1.42899 * 113.73303 * 90.63984 * 15 14 13 17 17 C 1.53001 * 113.73377 * 221.81720 * 15 14 13 18 18 C 1.53001 * 109.46900 * 178.10018 * 17 15 14 19 19 C 1.48294 * 111.01139 * 286.83881 * 13 3 2 20 20 H 1.09006 * 109.47287 * 63.92871 * 1 2 3 21 21 H 1.09001 * 109.47456 * 183.92733 * 1 2 3 22 22 H 1.09000 * 109.47185 * 303.93317 * 1 2 3 23 23 H 1.09002 * 109.46899 * 240.00381 * 2 1 3 24 24 H 1.08998 * 109.47280 * 120.00205 * 2 1 3 25 25 H 0.96998 * 120.00451 * 180.02562 * 8 7 5 26 26 H 1.09003 * 113.76176 * 23.26508 * 14 13 3 27 27 H 1.09003 * 113.76379 * 251.90314 * 14 13 3 28 28 H 0.96705 * 114.00229 * 181.90375 * 16 15 14 29 29 H 1.09003 * 109.47393 * 298.09762 * 17 15 14 30 30 H 1.08992 * 109.47053 * 58.10122 * 17 15 14 31 31 H 1.09002 * 109.47721 * 60.00177 * 18 17 15 32 32 H 1.09007 * 109.46945 * 179.97438 * 18 17 15 33 33 H 1.08997 * 109.47466 * 299.99680 * 18 17 15 34 34 H 1.09002 * 113.86050 * 108.14125 * 19 13 3 35 35 H 1.09001 * 113.75869 * 336.68590 * 19 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4424 0.0083 5 6 1.5283 2.1562 1.2246 6 1 0.9082 3.0340 1.1185 7 6 1.8517 1.6885 2.4806 8 7 2.6064 0.6193 2.6100 9 14 1.2168 2.5728 3.9988 10 1 0.3941 3.7378 3.5850 11 1 0.3859 1.6412 4.8029 12 1 2.3653 3.0421 4.8148 13 7 1.5596 2.1317 -1.2051 14 6 2.1764 3.4706 -1.3315 15 6 2.3343 3.1433 -2.8273 16 8 1.2228 3.5537 -3.6262 17 6 3.6807 3.5734 -3.4130 18 6 3.7517 3.1611 -4.8847 19 6 2.2845 1.6623 -2.4106 20 1 -0.3634 0.4517 -0.9231 21 1 -0.3634 -1.0252 0.0704 22 1 -0.3633 0.5737 0.8526 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 2.8337 0.2900 3.4937 26 1 3.1236 3.5697 -0.8013 27 1 1.4881 4.2919 -1.1319 28 1 1.3049 3.3240 -4.5620 29 1 3.7825 4.6557 -3.3337 30 1 4.4875 3.0911 -2.8613 31 1 2.9448 3.6433 -5.4366 32 1 4.7108 3.4678 -5.3022 33 1 3.6500 2.0788 -4.9642 34 1 1.6825 1.0398 -3.0726 35 1 3.2633 1.2336 -2.1954 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084359182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = -46.979244 kcal Electronic energy + Delta-G solvation = -15161.881485 eV Core-core repulsion = 12773.812725 eV Total energy + Delta-G solvation = -2388.068761 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.26406 -37.48156 -35.32864 -33.51973 -32.93338 -29.30967 -27.54908 -26.47086 -25.15216 -23.16822 -20.89514 -20.69371 -18.22063 -17.72900 -17.12656 -16.34486 -15.72480 -15.55500 -15.34206 -14.70946 -14.15572 -14.02860 -13.80225 -13.43242 -13.18802 -12.86065 -12.76398 -12.63740 -12.45743 -12.43063 -12.12909 -11.89946 -11.61109 -11.49373 -11.05068 -10.82416 -10.54087 -10.49769 -9.32054 -8.11217 -6.21474 1.37643 1.40460 1.51707 2.41091 3.04168 3.16191 3.37056 3.66159 3.78230 4.25107 4.44490 4.48333 4.58603 4.60224 4.69160 4.73548 4.79986 4.85253 4.94437 5.04713 5.11559 5.17213 5.23069 5.29962 5.39228 5.42773 5.57772 5.70946 5.79383 6.11525 6.32127 6.57845 6.89615 6.92410 7.46081 8.94352 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040402 B = 0.008772 C = 0.008199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.872345 B = 3191.256775 C = 3414.322057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C 0.190 3.810 4 H -0.029 1.029 5 C -0.507 4.507 6 H 0.046 0.954 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.951 3.049 10 H -0.272 1.272 11 H -0.280 1.280 12 H -0.279 1.279 13 N -0.479 5.479 14 C 0.024 3.976 15 C 0.121 3.879 16 O -0.546 6.546 17 C -0.139 4.139 18 C -0.151 4.151 19 C -0.021 4.021 20 H 0.046 0.954 21 H 0.038 0.962 22 H 0.035 0.965 23 H 0.025 0.975 24 H 0.063 0.937 25 H 0.261 0.739 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.388 0.612 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.010 3.300 -12.247 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.142 4.142 3 C 0.083 3.917 4 H -0.011 1.011 5 C -0.546 4.546 6 H 0.065 0.935 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.777 3.223 10 H -0.197 1.197 11 H -0.205 1.205 12 H -0.205 1.205 13 N -0.201 5.201 14 C -0.105 4.105 15 C 0.079 3.921 16 O -0.355 6.355 17 C -0.177 4.177 18 C -0.208 4.208 19 C -0.150 4.150 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.054 0.946 23 H 0.044 0.956 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.239 0.761 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.155 3.330 -11.480 12.009 hybrid contribution 0.902 -0.005 0.861 1.247 sum 2.056 3.325 -10.619 11.316 Atomic orbital electron populations 1.21322 0.96074 0.98577 1.00654 1.21336 0.96240 0.97483 0.99113 1.19606 0.91085 0.92432 0.88612 1.01112 1.21199 1.30795 1.11581 0.91011 0.93532 1.25592 0.95396 0.95754 1.01471 1.70000 1.38095 1.23972 1.23619 0.85606 0.78198 0.78725 0.79750 1.19659 1.20544 1.20478 1.68586 1.46400 1.02529 1.02622 1.23765 0.98441 0.94765 0.93532 1.22540 0.86822 0.92364 0.90360 1.86528 1.42701 1.82154 1.24080 1.22040 0.95119 1.02234 0.98316 1.21742 1.03211 1.01839 0.94009 1.24601 0.97818 0.97728 0.94862 0.93517 0.94316 0.94628 0.95589 0.91883 0.92969 0.91495 0.91289 0.76128 0.90673 0.91347 0.91175 0.90979 0.92272 0.89489 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.01 9.52 71.98 0.69 -4.32 16 2 C -0.10 -5.12 5.45 30.59 0.17 -4.95 16 3 C 0.19 9.82 1.35 44.17 0.06 9.88 16 4 H -0.03 -1.62 7.69 -2.38 -0.02 -1.64 16 5 C -0.51 -28.47 6.87 25.60 0.18 -28.30 16 6 H 0.05 2.69 7.72 -2.92 -0.02 2.67 16 7 C 0.02 0.93 5.30 84.65 0.45 1.38 16 8 N -0.92 -52.99 11.32 21.45 0.24 -52.74 16 9 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 13 N -0.48 -21.33 5.30 -888.90 -4.71 -26.04 16 14 C 0.02 0.97 6.71 86.41 0.58 1.55 16 15 C 0.12 3.77 1.50 -10.15 -0.02 3.76 16 16 O -0.55 -16.33 13.45 -148.98 -2.00 -18.33 16 17 C -0.14 -3.29 5.62 30.60 0.17 -3.12 16 18 C -0.15 -2.56 9.42 71.98 0.68 -1.88 16 19 C -0.02 -0.74 6.62 86.34 0.57 -0.17 16 20 H 0.05 2.06 7.74 -2.38 -0.02 2.04 16 21 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.03 1.77 7.06 -2.39 -0.02 1.76 16 23 H 0.03 1.17 7.62 -2.39 -0.02 1.15 16 24 H 0.06 3.48 6.08 -2.39 -0.01 3.47 16 25 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 26 H 0.07 2.78 7.79 -2.39 -0.02 2.76 16 27 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 28 H 0.39 7.74 7.09 -74.05 -0.53 7.21 16 29 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.70 7.98 -2.39 -0.02 1.68 16 31 H 0.07 0.99 6.75 -2.39 -0.02 0.97 16 32 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.06 2.25 7.59 -2.39 -0.02 2.23 16 Total: -1.00 -63.53 277.59 -0.40 -63.93 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.53 Total: 12.77 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: 3.52 Total: -26.18 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -4.47 Total: -78.79 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -2.00 Total: -18.33 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.53 -0.40 -63.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084359182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.951 kcal (2) G-P(sol) polarization free energy of solvation -63.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds