Wall clock time and date at job start Mon Mar 30 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 H 1.09002 * 109.47403 * 303.96101 * 3 2 1 5 5 C 1.50700 * 109.46916 * 183.95690 * 3 2 1 6 6 H 1.07999 * 119.99921 * 245.44470 * 5 3 2 7 7 C 1.37871 * 120.00059 * 65.45861 * 5 3 2 8 8 N 1.31514 * 120.00327 * 9.41867 * 7 5 3 9 9 Si 1.86802 * 120.00213 * 189.42240 * 7 5 3 10 10 H 1.48494 * 109.47425 * 84.98778 * 9 7 5 11 11 H 1.48496 * 109.47437 * 204.99078 * 9 7 5 12 12 H 1.48502 * 109.46944 * 324.98713 * 9 7 5 13 13 N 1.46905 * 109.46736 * 63.96232 * 3 2 1 14 14 O 1.46300 * 110.99418 * 269.99886 * 13 3 2 15 15 C 1.42909 * 113.99520 * 180.02562 * 14 13 3 16 16 C 1.55236 * 110.46505 * 269.80656 * 15 14 13 17 17 C 1.54895 * 102.58577 * 203.39622 * 16 15 14 18 18 C 1.54265 * 104.31288 * 37.93197 * 17 16 15 19 19 C 1.53878 * 106.59888 * 336.32603 * 18 17 16 20 20 H 1.08993 * 109.46656 * 299.99576 * 1 2 3 21 21 H 1.09003 * 109.47197 * 59.99972 * 1 2 3 22 22 H 1.09000 * 109.46484 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47057 * 240.00451 * 2 1 3 24 24 H 1.08999 * 109.47190 * 120.00785 * 2 1 3 25 25 H 0.96998 * 120.00680 * 180.02562 * 8 7 5 26 26 H 1.00896 * 110.99931 * 33.94943 * 13 3 2 27 27 H 1.09001 * 110.43475 * 32.46071 * 15 14 13 28 28 H 1.09005 * 110.89911 * 85.10900 * 16 15 14 29 29 H 1.08997 * 110.76938 * 321.62623 * 16 15 14 30 30 H 1.08997 * 110.48616 * 279.18896 * 17 16 15 31 31 H 1.09000 * 110.48443 * 156.67926 * 17 16 15 32 32 H 1.09000 * 110.03108 * 95.60869 * 18 17 16 33 33 H 1.08996 * 110.03398 * 216.99182 * 18 17 16 34 34 H 1.08998 * 110.03357 * 119.28274 * 19 18 17 35 35 H 1.08998 * 110.03237 * 240.66539 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6199 1.9765 -0.8524 5 6 3.5438 1.4435 -0.0980 6 1 4.1383 1.8129 0.7244 7 6 4.1607 0.9732 -1.2378 8 7 3.4456 0.6980 -2.3067 9 14 6.0122 0.7268 -1.2640 10 1 6.3417 -0.6091 -0.7057 11 1 6.5035 0.8136 -2.6626 12 1 6.6633 1.7802 -0.4444 13 7 1.6300 2.1068 1.2445 14 8 0.3267 2.7529 1.0889 15 6 -0.1347 3.4211 2.2649 16 6 -0.9718 2.4546 3.1453 17 6 -1.8509 3.4262 3.9713 18 6 -2.2129 4.5504 2.9788 19 6 -1.1218 4.5471 1.8938 20 1 -0.3632 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.8795 0.3667 -3.1085 26 1 1.6214 1.4562 2.0157 27 1 0.7068 3.8223 2.8296 28 1 -0.3270 1.8668 3.7986 29 1 -1.5906 1.8055 2.5258 30 1 -1.2877 3.8278 4.8136 31 1 -2.7515 2.9218 4.3215 32 1 -3.1864 4.3529 2.5300 33 1 -2.2269 5.5116 3.4924 34 1 -1.5657 4.3481 0.9184 35 1 -0.6060 5.5072 1.8801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137008960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:36 Heat of formation + Delta-G solvation = -27.105255 kcal Electronic energy + Delta-G solvation = -14730.234236 eV Core-core repulsion = 12343.027276 eV Total energy + Delta-G solvation = -2387.206960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.10190 -35.92048 -33.87483 -31.75148 -29.24819 -28.56266 -27.07227 -25.57310 -22.63971 -20.43098 -20.15274 -19.57617 -17.05177 -16.11402 -15.37028 -14.90134 -14.61771 -13.77459 -13.38227 -13.21708 -12.81777 -12.69665 -12.14336 -11.75445 -11.39926 -11.37704 -11.12310 -10.99641 -10.88629 -10.63838 -10.45517 -10.35424 -10.16418 -10.00487 -9.74439 -9.55958 -9.03876 -8.37044 -7.43150 -6.06414 -4.07295 3.31515 3.37152 3.39935 3.74724 4.46280 4.77547 4.80778 4.97416 5.25926 5.54207 5.62107 5.64601 5.70614 5.77437 5.93516 5.97471 6.13159 6.14013 6.21907 6.35086 6.39097 6.40736 6.42517 6.53657 6.81984 7.03830 7.09431 7.42639 7.57898 7.79244 8.13629 8.34894 8.50541 8.98019 9.55011 11.03221 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050236 B = 0.006856 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.236901 B = 4082.882334 C = 4290.936861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.143 4.143 3 C 0.209 3.791 4 H 0.056 0.944 5 C -0.500 4.500 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.490 5.490 14 O -0.258 6.258 15 C 0.084 3.916 16 C -0.152 4.152 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.119 4.119 20 H 0.043 0.957 21 H 0.046 0.954 22 H 0.031 0.969 23 H 0.081 0.919 24 H 0.036 0.964 25 H 0.262 0.738 26 H 0.313 0.687 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.539 3.286 9.246 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.182 4.182 3 C 0.101 3.899 4 H 0.074 0.926 5 C -0.539 4.539 6 H 0.083 0.917 7 C -0.140 4.140 8 N -0.527 5.527 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.162 5.162 14 O -0.263 6.263 15 C 0.025 3.975 16 C -0.190 4.190 17 C -0.160 4.160 18 C -0.158 4.158 19 C -0.158 4.158 20 H 0.062 0.938 21 H 0.065 0.935 22 H 0.050 0.950 23 H 0.099 0.901 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.126 0.874 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.306 3.831 8.706 12.628 hybrid contribution 0.417 -1.134 0.089 1.212 sum -7.890 2.697 8.795 12.119 Atomic orbital electron populations 1.21842 0.98510 0.98987 1.01052 1.22214 0.92638 1.01613 1.01760 1.19535 0.95144 0.88270 0.86984 0.92577 1.20863 0.89504 1.41748 1.01789 0.91741 1.24910 0.98509 0.95648 0.94950 1.69982 1.35773 1.44747 1.02233 0.86473 0.84982 0.78647 0.77099 1.20590 1.21304 1.19808 1.67358 1.03046 1.36663 1.09105 1.90841 1.34378 1.69439 1.31638 1.22808 0.95059 0.91678 0.88001 1.23150 0.98881 0.98334 0.98678 1.22249 0.99417 0.96517 0.97792 1.22073 0.98606 0.98608 0.96543 1.22115 0.96132 0.98046 0.99463 0.93758 0.93468 0.95004 0.90064 0.94545 0.92807 0.87355 0.91160 0.91793 0.91083 0.91743 0.91966 0.91932 0.91955 0.90901 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.03 9.43 37.16 0.35 -2.68 16 2 C -0.14 -3.38 5.23 -26.73 -0.14 -3.52 16 3 C 0.21 5.38 2.26 -68.86 -0.16 5.22 16 4 H 0.06 1.65 7.99 -51.93 -0.42 1.24 16 5 C -0.50 -13.87 8.76 -34.44 -0.30 -14.17 16 6 H 0.06 1.78 7.83 -52.49 -0.41 1.37 16 7 C 0.06 1.72 5.17 -17.82 -0.09 1.63 16 8 N -0.89 -25.60 12.16 55.43 0.67 -24.92 16 9 Si 0.90 21.31 29.55 -169.99 -5.02 16.28 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.49 -11.02 6.75 -5.65 -0.04 -11.06 16 14 O -0.26 -5.39 9.30 -13.92 -0.13 -5.52 16 15 C 0.08 1.37 3.61 -24.89 -0.09 1.28 16 16 C -0.15 -2.11 6.65 -24.55 -0.16 -2.28 16 17 C -0.12 -1.36 6.82 -25.07 -0.17 -1.54 16 18 C -0.12 -1.35 6.80 -25.61 -0.17 -1.52 16 19 C -0.12 -1.66 6.56 -25.61 -0.17 -1.82 16 20 H 0.04 0.87 6.67 -51.93 -0.35 0.52 16 21 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 2.13 6.82 -51.93 -0.35 1.78 16 24 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.31 6.45 8.53 -39.29 -0.33 6.12 16 27 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 284.02 15.07 4.28 4.28 Total: -1.00 -28.60 284.02 -7.40 -36.00 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -6.06 Total: 4.33 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -1.11 Total: -19.39 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.64 Total: -35.98 kcal Atomic # 8 Polarization: -5.39 SS G_CDS: -0.13 Total: -5.52 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -28.60 -7.40 -36.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137008960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.897 kcal (2) G-P(sol) polarization free energy of solvation -28.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds