Wall clock time and date at job start Mon Mar 30 2020 03:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 H 1.09002 * 109.47403 * 303.96101 * 3 2 1 5 5 C 1.50700 * 109.46916 * 183.95690 * 3 2 1 6 6 H 1.07999 * 119.99921 * 245.44470 * 5 3 2 7 7 C 1.37871 * 120.00059 * 65.45861 * 5 3 2 8 8 N 1.31514 * 120.00327 * 9.41867 * 7 5 3 9 9 Si 1.86802 * 120.00213 * 189.42240 * 7 5 3 10 10 H 1.48494 * 109.47425 * 84.98778 * 9 7 5 11 11 H 1.48496 * 109.47437 * 204.99078 * 9 7 5 12 12 H 1.48502 * 109.46944 * 324.98713 * 9 7 5 13 13 N 1.46905 * 109.46736 * 63.96232 * 3 2 1 14 14 O 1.46300 * 110.99418 * 269.99886 * 13 3 2 15 15 C 1.42909 * 113.99520 * 180.02562 * 14 13 3 16 16 C 1.55236 * 110.46505 * 269.80656 * 15 14 13 17 17 C 1.54895 * 102.58577 * 203.39622 * 16 15 14 18 18 C 1.54265 * 104.31288 * 37.93197 * 17 16 15 19 19 C 1.53878 * 106.59888 * 336.32603 * 18 17 16 20 20 H 1.08993 * 109.46656 * 299.99576 * 1 2 3 21 21 H 1.09003 * 109.47197 * 59.99972 * 1 2 3 22 22 H 1.09000 * 109.46484 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47057 * 240.00451 * 2 1 3 24 24 H 1.08999 * 109.47190 * 120.00785 * 2 1 3 25 25 H 0.96998 * 120.00680 * 180.02562 * 8 7 5 26 26 H 1.00896 * 110.99931 * 33.94943 * 13 3 2 27 27 H 1.09001 * 110.43475 * 32.46071 * 15 14 13 28 28 H 1.09005 * 110.89911 * 85.10900 * 16 15 14 29 29 H 1.08997 * 110.76938 * 321.62623 * 16 15 14 30 30 H 1.08997 * 110.48616 * 279.18896 * 17 16 15 31 31 H 1.09000 * 110.48443 * 156.67926 * 17 16 15 32 32 H 1.09000 * 110.03108 * 95.60869 * 18 17 16 33 33 H 1.08996 * 110.03398 * 216.99182 * 18 17 16 34 34 H 1.08998 * 110.03357 * 119.28274 * 19 18 17 35 35 H 1.08998 * 110.03237 * 240.66539 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6199 1.9765 -0.8524 5 6 3.5438 1.4435 -0.0980 6 1 4.1383 1.8129 0.7244 7 6 4.1607 0.9732 -1.2378 8 7 3.4456 0.6980 -2.3067 9 14 6.0122 0.7268 -1.2640 10 1 6.3417 -0.6091 -0.7057 11 1 6.5035 0.8136 -2.6626 12 1 6.6633 1.7802 -0.4444 13 7 1.6300 2.1068 1.2445 14 8 0.3267 2.7529 1.0889 15 6 -0.1347 3.4211 2.2649 16 6 -0.9718 2.4546 3.1453 17 6 -1.8509 3.4262 3.9713 18 6 -2.2129 4.5504 2.9788 19 6 -1.1218 4.5471 1.8938 20 1 -0.3632 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 3.8795 0.3667 -3.1085 26 1 1.6214 1.4562 2.0157 27 1 0.7068 3.8223 2.8296 28 1 -0.3270 1.8668 3.7986 29 1 -1.5906 1.8055 2.5258 30 1 -1.2877 3.8278 4.8136 31 1 -2.7515 2.9218 4.3215 32 1 -3.1864 4.3529 2.5300 33 1 -2.2269 5.5116 3.4924 34 1 -1.5657 4.3481 0.9184 35 1 -0.6060 5.5072 1.8801 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137008960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:36 Heat of formation + Delta-G solvation = -44.030933 kcal Electronic energy + Delta-G solvation = -14730.968188 eV Core-core repulsion = 12343.027276 eV Total energy + Delta-G solvation = -2387.940912 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35883 -37.66315 -35.53276 -33.76858 -30.98137 -29.62728 -28.51992 -27.36541 -24.56839 -21.85851 -21.48163 -20.98305 -18.82752 -17.92001 -16.87196 -16.40438 -16.05114 -15.55541 -15.07105 -14.61730 -14.37435 -14.09319 -13.52779 -13.38159 -13.26131 -13.05261 -12.71592 -12.50239 -12.14011 -12.05725 -12.01720 -11.94760 -11.66083 -11.53258 -11.32088 -11.24463 -10.77921 -10.49620 -9.22215 -8.17980 -6.27201 1.43880 1.45126 1.55260 2.09810 2.51078 3.12656 3.74148 3.75885 3.93732 4.30360 4.36276 4.43827 4.52296 4.54456 4.61416 4.63857 4.81620 4.82452 4.96311 4.97670 5.08469 5.15255 5.21294 5.23415 5.26843 5.30285 5.48029 5.57762 5.59792 5.72853 6.15434 6.34189 6.77042 6.83285 7.39893 8.91506 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050236 B = 0.006856 C = 0.006524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.236901 B = 4082.882334 C = 4290.936861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.134 4.134 3 C 0.216 3.784 4 H 0.009 0.991 5 C -0.522 4.522 6 H 0.061 0.939 7 C 0.015 3.985 8 N -0.920 5.920 9 Si 0.968 3.032 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.268 1.268 13 N -0.494 5.494 14 O -0.273 6.273 15 C 0.069 3.931 16 C -0.149 4.149 17 C -0.115 4.115 18 C -0.114 4.114 19 C -0.119 4.119 20 H 0.053 0.947 21 H 0.030 0.970 22 H 0.057 0.943 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.264 0.736 26 H 0.324 0.676 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.941 3.327 10.921 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.174 4.174 3 C 0.108 3.892 4 H 0.027 0.973 5 C -0.561 4.561 6 H 0.079 0.921 7 C -0.185 4.185 8 N -0.559 5.559 9 Si 0.793 3.207 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.193 1.193 13 N -0.165 5.165 14 O -0.280 6.280 15 C 0.010 3.990 16 C -0.187 4.187 17 C -0.153 4.153 18 C -0.152 4.152 19 C -0.158 4.158 20 H 0.072 0.928 21 H 0.049 0.951 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.076 0.924 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.710 3.872 10.407 14.112 hybrid contribution 0.476 -1.071 -0.403 1.240 sum -8.235 2.800 10.004 13.256 Atomic orbital electron populations 1.21699 0.96143 1.00555 1.00719 1.22040 0.94703 0.99908 1.00760 1.19229 0.94320 0.89075 0.86623 0.97318 1.21173 0.90779 1.42150 1.01963 0.92115 1.25749 1.03219 0.95086 0.94414 1.70109 1.37720 1.45285 1.02771 0.85417 0.79203 0.78924 0.77168 1.19503 1.20968 1.19281 1.67128 1.05007 1.36429 1.07932 1.90820 1.32972 1.69859 1.34387 1.23208 0.95729 0.92951 0.87113 1.23092 0.98831 0.98312 0.98450 1.22252 0.99701 0.95724 0.97587 1.22067 0.97664 0.99818 0.95628 1.22162 0.96483 0.97225 0.99905 0.92762 0.95071 0.92395 0.92961 0.93422 0.92686 0.86195 0.91493 0.91458 0.92071 0.90498 0.90152 0.91071 0.89869 0.92425 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.48 9.43 71.98 0.68 -4.80 16 2 C -0.13 -6.44 5.23 30.59 0.16 -6.28 16 3 C 0.22 11.46 2.26 44.17 0.10 11.56 16 4 H 0.01 0.55 7.99 -2.39 -0.02 0.53 16 5 C -0.52 -29.46 8.76 25.60 0.22 -29.24 16 6 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 7 C 0.01 0.82 5.17 84.65 0.44 1.26 16 8 N -0.92 -54.14 12.16 21.44 0.26 -53.88 16 9 Si 0.97 43.83 29.55 68.60 2.03 45.86 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 N -0.49 -22.51 6.75 -171.79 -1.16 -23.67 16 14 O -0.27 -11.54 9.30 -50.16 -0.47 -12.00 16 15 C 0.07 2.19 3.61 31.79 0.11 2.31 16 16 C -0.15 -3.87 6.65 32.01 0.21 -3.65 16 17 C -0.12 -2.21 6.82 31.67 0.22 -1.99 16 18 C -0.11 -2.22 6.80 31.32 0.21 -2.01 16 19 C -0.12 -3.18 6.56 31.32 0.21 -2.97 16 20 H 0.05 2.09 6.67 -2.39 -0.02 2.08 16 21 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.05 2.80 6.82 -2.38 -0.02 2.78 16 24 H 0.05 2.13 8.05 -2.39 -0.02 2.11 16 25 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 26 H 0.32 13.28 8.53 -89.70 -0.76 12.52 16 27 H 0.07 2.17 8.10 -2.39 -0.02 2.15 16 28 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.71 8.07 -2.39 -0.02 1.69 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -62.30 284.02 3.50 -58.80 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: 0.28 Total: 20.71 kcal Atomic # 6 Polarization: -38.38 SS G_CDS: 2.56 Total: -35.82 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -0.90 Total: -77.55 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.47 Total: -12.00 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -62.30 3.50 -58.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137008960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.769 kcal (2) G-P(sol) polarization free energy of solvation -62.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds