Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 H 1.08996 * 109.47128 * 174.06059 * 3 2 1 5 5 C 1.50704 * 109.46778 * 54.06518 * 3 2 1 6 6 H 1.07998 * 119.99792 * 239.99317 * 5 3 2 7 7 C 1.37872 * 120.00035 * 59.99961 * 5 3 2 8 8 N 1.31513 * 120.00035 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00031 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.47075 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47073 * 119.99940 * 9 7 5 12 12 H 1.48500 * 109.47593 * 240.00267 * 9 7 5 13 13 N 1.46896 * 109.47195 * 294.06466 * 3 2 1 14 14 C 1.46900 * 110.99981 * 274.26202 * 13 3 2 15 15 C 1.53002 * 109.47221 * 185.41884 * 14 13 3 16 16 C 1.52996 * 115.56274 * 87.70000 * 15 14 13 17 17 O 1.42899 * 109.46939 * 32.80859 * 16 15 14 18 18 C 1.53005 * 117.49976 * 233.39247 * 15 14 13 19 19 C 1.52997 * 60.00294 * 107.48677 * 18 15 14 20 20 H 1.08997 * 109.47392 * 63.97184 * 1 2 3 21 21 H 1.08998 * 109.47056 * 183.97854 * 1 2 3 22 22 H 1.09004 * 109.46735 * 303.97256 * 1 2 3 23 23 H 1.09004 * 109.46963 * 240.00007 * 2 1 3 24 24 H 1.08997 * 109.46961 * 120.00537 * 2 1 3 25 25 H 0.97000 * 119.99632 * 179.97438 * 8 7 5 26 26 H 1.00897 * 111.00182 * 38.22046 * 13 3 2 27 27 H 1.09001 * 109.47137 * 65.42054 * 14 13 3 28 28 H 1.08994 * 109.47465 * 305.41802 * 14 13 3 29 29 H 1.09000 * 109.47120 * 152.81294 * 16 15 14 30 30 H 1.09001 * 109.47031 * 272.80935 * 16 15 14 31 31 H 0.96701 * 113.99928 * 180.02562 * 17 16 15 32 32 H 1.08999 * 117.49434 * 214.98143 * 18 15 14 33 33 H 1.09001 * 117.49863 * 359.97438 * 18 15 14 34 34 H 1.09004 * 117.49774 * 252.51505 * 19 18 15 35 35 H 1.09000 * 117.49835 * 107.48648 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1248 1.4443 0.1063 5 6 1.4213 2.1940 1.1505 6 1 0.8146 3.0671 0.9611 7 6 1.6299 1.7669 2.4447 8 7 2.3684 0.7034 2.6752 9 14 0.8635 2.6988 3.8707 10 1 0.0837 3.8495 3.3481 11 1 -0.0382 1.7928 4.6266 12 1 1.9352 3.1947 4.7711 13 7 1.6708 2.0924 -1.2646 14 6 2.6708 1.8231 -2.3065 15 6 2.3249 2.6227 -3.5642 16 6 2.8939 4.0418 -3.6216 17 8 4.1574 4.0756 -2.9548 18 6 2.2117 1.8531 -4.8818 19 6 0.9519 2.3860 -4.1965 20 1 -0.3634 0.4509 -0.9234 21 1 -0.3633 -1.0252 0.0713 22 1 -0.3633 0.5743 0.8523 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.5154 0.4032 3.5858 26 1 0.7508 1.8055 -1.5635 27 1 2.6728 0.7588 -2.5417 28 1 3.6571 2.1179 -1.9484 29 1 3.0240 4.3392 -4.6621 30 1 2.2054 4.7294 -3.1305 31 1 4.5773 4.9467 -2.9518 32 1 2.5428 2.3579 -5.7894 33 1 2.3841 0.7772 -4.8526 34 1 0.2950 1.6606 -3.7164 35 1 0.4540 3.2413 -4.6533 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168853389.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = -54.434374 kcal Electronic energy + Delta-G solvation = -14847.751837 eV Core-core repulsion = 12459.359798 eV Total energy + Delta-G solvation = -2388.392039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.81962 -37.79117 -36.60566 -34.16368 -32.15802 -28.72922 -27.76562 -25.93766 -25.00277 -23.21294 -21.19897 -19.97584 -18.27915 -18.07301 -16.98842 -16.68649 -15.89961 -15.60116 -15.22529 -14.69296 -14.57009 -14.22499 -13.80676 -13.65510 -13.08517 -12.87655 -12.71322 -12.45109 -12.35536 -12.11233 -11.79762 -11.61176 -11.44336 -11.25586 -11.07567 -10.92409 -10.43505 -10.37982 -8.85411 -8.04132 -6.12727 1.41908 1.43968 1.55852 2.46083 2.81722 3.24169 3.42376 3.69137 3.96028 4.03092 4.25545 4.31925 4.52769 4.56324 4.58929 4.70165 4.77131 4.82055 4.95177 5.02515 5.09182 5.13136 5.26979 5.28658 5.40292 5.43111 5.69820 5.74264 5.85337 6.33591 6.72335 6.91273 7.01491 7.04833 7.55024 9.01799 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.035311 B = 0.008371 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.771496 B = 3343.977797 C = 3707.114913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.137 4.137 3 C 0.221 3.779 4 H -0.012 1.012 5 C -0.495 4.495 6 H 0.052 0.948 7 C 0.010 3.990 8 N -0.923 5.923 9 Si 0.954 3.046 10 H -0.268 1.268 11 H -0.280 1.280 12 H -0.285 1.285 13 N -0.678 5.678 14 C 0.106 3.894 15 C -0.140 4.140 16 C 0.124 3.876 17 O -0.589 6.589 18 C -0.162 4.162 19 C -0.157 4.157 20 H 0.049 0.951 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.020 0.980 24 H 0.060 0.940 25 H 0.258 0.742 26 H 0.330 0.670 27 H 0.007 0.993 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.392 0.608 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.912 4.076 -13.376 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.177 4.177 3 C 0.112 3.888 4 H 0.006 0.994 5 C -0.534 4.534 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.564 5.564 9 Si 0.780 3.220 10 H -0.192 1.192 11 H -0.206 1.206 12 H -0.211 1.211 13 N -0.309 5.309 14 C -0.024 4.024 15 C -0.140 4.140 16 C 0.047 3.953 17 O -0.397 6.397 18 C -0.199 4.199 19 C -0.194 4.194 20 H 0.067 0.933 21 H 0.061 0.939 22 H 0.065 0.935 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.149 0.851 27 H 0.025 0.975 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.241 0.759 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.707 3.965 -12.965 13.665 hybrid contribution -0.066 -0.214 0.880 0.908 sum -1.773 3.751 -12.085 12.778 Atomic orbital electron populations 1.21462 0.95624 0.99572 1.00949 1.21943 0.96768 0.99988 0.99019 1.18951 0.93226 0.89561 0.87061 0.99407 1.21297 1.30035 1.11214 0.90844 0.92941 1.25651 0.96084 0.95992 1.01087 1.70040 1.40411 1.25417 1.20537 0.85561 0.78182 0.78824 0.79390 1.19232 1.20613 1.21096 1.60604 1.04378 1.62818 1.03074 1.21183 0.96113 0.94348 0.90720 1.21443 1.02087 0.96763 0.93720 1.21522 0.84396 0.93693 0.95693 1.86498 1.35420 1.37489 1.80318 1.23249 1.01463 1.00088 0.95108 1.22970 0.90079 1.03694 1.02655 0.93254 0.93856 0.93469 0.96156 0.92132 0.93256 0.85146 0.97455 0.92861 0.91343 0.93692 0.75886 0.86586 0.89247 0.89339 0.86759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.41 71.98 0.68 -4.41 16 2 C -0.14 -6.74 5.50 30.59 0.17 -6.57 16 3 C 0.22 11.63 2.33 44.17 0.10 11.74 16 4 H -0.01 -0.73 7.70 -2.39 -0.02 -0.75 16 5 C -0.50 -27.91 7.25 25.60 0.19 -27.73 16 6 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 7 C 0.01 0.54 5.24 84.65 0.44 0.98 16 8 N -0.92 -54.42 11.39 21.45 0.24 -54.18 16 9 Si 0.95 44.79 29.54 68.60 2.03 46.81 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 N -0.68 -30.08 6.19 -495.46 -3.07 -33.14 16 14 C 0.11 4.20 5.43 86.30 0.47 4.67 16 15 C -0.14 -4.18 2.26 -52.18 -0.12 -4.30 16 16 C 0.12 3.34 7.19 71.98 0.52 3.85 16 17 O -0.59 -17.84 12.17 -148.98 -1.81 -19.65 16 18 C -0.16 -3.76 9.82 30.59 0.30 -3.46 16 19 C -0.16 -3.81 9.53 30.60 0.29 -3.52 16 20 H 0.05 1.86 6.62 -2.39 -0.02 1.85 16 21 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.05 2.22 6.85 -2.38 -0.02 2.21 16 23 H 0.02 0.91 7.48 -2.38 -0.02 0.90 16 24 H 0.06 3.36 6.25 -2.39 -0.01 3.34 16 25 H 0.26 14.51 8.31 -92.71 -0.77 13.73 16 26 H 0.33 13.57 5.76 -89.70 -0.52 13.05 16 27 H 0.01 0.29 7.27 -2.39 -0.02 0.28 16 28 H 0.05 2.41 6.59 -2.39 -0.02 2.40 16 29 H 0.07 1.37 7.89 -2.39 -0.02 1.35 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.39 7.75 9.12 -74.06 -0.68 7.08 16 32 H 0.12 2.12 8.04 -2.39 -0.02 2.10 16 33 H 0.09 2.13 8.04 -2.39 -0.02 2.11 16 34 H 0.09 2.28 7.60 -2.38 -0.02 2.26 16 35 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -65.44 280.31 0.32 -65.12 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.11 Total: 23.80 kcal Atomic # 6 Polarization: -31.80 SS G_CDS: 3.04 Total: -28.76 kcal Atomic # 7 Polarization: -84.50 SS G_CDS: -2.82 Total: -87.32 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.81 Total: -19.65 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -65.44 0.32 -65.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168853389.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.688 kcal (2) G-P(sol) polarization free energy of solvation -65.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds