Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.08998 * 109.98734 * 54.63242 * 3 2 1 5 5 O 1.43745 * 109.87821 * 293.55027 * 3 2 1 6 6 C 1.44382 * 106.97554 * 214.05833 * 5 3 2 7 7 C 1.55000 * 103.48861 * 40.06459 * 6 5 3 8 8 C 1.54097 * 109.87805 * 175.71876 * 3 2 1 9 9 H 1.09004 * 110.48577 * 240.12895 * 8 3 2 10 10 C 1.52990 * 110.49134 * 2.64442 * 8 3 2 11 11 N 1.46899 * 109.47442 * 184.99896 * 10 8 3 12 12 C 1.46901 * 111.00301 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47354 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99915 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46904 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46613 * 119.99953 * 17 15 13 20 20 H 1.48493 * 109.47028 * 239.99642 * 17 15 13 21 21 H 1.09001 * 109.47250 * 59.99081 * 1 2 3 22 22 H 1.08995 * 109.47282 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46749 * 299.99747 * 1 2 3 24 24 H 1.09004 * 109.46749 * 240.00252 * 2 1 3 25 25 H 1.09001 * 109.47460 * 120.00162 * 2 1 3 26 26 H 1.08999 * 110.61481 * 158.56165 * 6 5 3 27 27 H 1.08997 * 110.62085 * 281.56061 * 6 5 3 28 28 H 1.08996 * 110.90766 * 204.77999 * 7 6 5 29 29 H 1.09000 * 110.90626 * 81.16957 * 7 6 5 30 30 H 1.09001 * 109.47128 * 304.99975 * 10 8 3 31 31 H 1.09003 * 109.47178 * 64.99832 * 10 8 3 32 32 H 1.00902 * 110.99740 * 56.04407 * 11 10 8 33 33 H 1.09008 * 109.46521 * 300.00341 * 12 11 10 34 34 H 1.08999 * 109.47057 * 59.99710 * 12 11 10 35 35 H 0.97006 * 119.99576 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9914 0.8353 5 8 1.6938 2.0834 -1.2392 6 6 2.7658 2.9975 -1.5550 7 6 4.0410 2.2090 -1.1619 8 6 3.5772 1.4548 0.1082 9 1 3.8922 1.9883 1.0050 10 6 4.1249 0.0263 0.1162 11 7 5.5764 0.0596 0.3398 12 6 6.1383 -1.2976 0.3531 13 6 7.6255 -1.2233 0.5850 14 1 8.1053 -0.2637 0.7096 15 6 8.3737 -2.3802 0.6371 16 7 7.7895 -3.5486 0.4849 17 14 10.2174 -2.2880 0.9239 18 1 10.6261 -0.8672 1.0635 19 1 10.5626 -3.0263 2.1654 20 1 10.9286 -2.8974 -0.2284 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 2.7711 3.2295 -2.6200 27 1 2.6802 3.9087 -0.9631 28 1 4.8627 2.8874 -0.9330 29 1 4.3235 1.5092 -1.9484 30 1 3.6472 -0.5415 0.9146 31 1 3.9158 -0.4484 -0.8425 32 1 5.7998 0.5523 1.1916 33 1 5.6745 -1.8749 1.1530 34 1 5.9432 -1.7810 -0.6041 35 1 8.3160 -4.3625 0.5212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233974676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = -62.951821 kcal Electronic energy + Delta-G solvation = -14483.730862 eV Core-core repulsion = 12094.969478 eV Total energy + Delta-G solvation = -2388.761384 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.71261 -35.54378 -33.59609 -32.74320 -31.33612 -28.53177 -26.68379 -23.85897 -23.35570 -21.58077 -21.32780 -19.28344 -16.40680 -16.38330 -15.66245 -15.33333 -14.69551 -14.56442 -13.62476 -13.48610 -13.34108 -13.10052 -12.29999 -12.21870 -11.71433 -11.43843 -11.38221 -11.32279 -10.93591 -10.76426 -10.70974 -10.46317 -10.39506 -10.22068 -9.89494 -9.48298 -9.15026 -8.48826 -7.27309 -6.04027 -4.06011 3.30327 3.37521 3.42547 4.00056 4.41815 4.69035 4.82414 4.96988 5.16515 5.24811 5.32005 5.37080 5.39891 5.58575 5.69288 5.72794 5.80328 5.86260 5.99624 6.03895 6.11681 6.24900 6.33845 6.34145 6.41677 6.55387 7.06116 7.24905 7.41467 7.78003 8.12251 8.38733 8.61003 9.03687 9.59106 11.07182 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048285 B = 0.005966 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.755652 B = 4692.179084 C = 5121.060262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.127 4.127 3 C 0.082 3.918 4 H 0.063 0.937 5 O -0.376 6.376 6 C 0.042 3.958 7 C -0.134 4.134 8 C -0.116 4.116 9 H 0.077 0.923 10 C 0.067 3.933 11 N -0.690 5.690 12 C 0.194 3.806 13 C -0.513 4.513 14 H 0.062 0.938 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.899 3.101 18 H -0.272 1.272 19 H -0.285 1.285 20 H -0.284 1.284 21 H 0.058 0.942 22 H 0.051 0.949 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.326 0.674 33 H -0.015 1.015 34 H 0.027 0.973 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.211 9.918 -0.839 14.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.081 0.919 5 O -0.296 6.296 6 C -0.034 4.034 7 C -0.172 4.172 8 C -0.135 4.135 9 H 0.096 0.904 10 C -0.063 4.063 11 N -0.321 5.321 12 C 0.067 3.933 13 C -0.552 4.552 14 H 0.081 0.919 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.727 3.273 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 H 0.077 0.923 22 H 0.070 0.930 23 H 0.068 0.932 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.003 0.997 34 H 0.045 0.955 35 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.212 9.779 -1.637 14.967 hybrid contribution 0.924 -0.392 1.158 1.532 sum -10.288 9.387 -0.479 13.935 Atomic orbital electron populations 1.21737 0.95862 1.01248 1.01755 1.21846 0.96011 0.95252 1.03345 1.22776 0.94026 0.93837 0.86948 0.91938 1.88843 1.43438 1.56988 1.40292 1.23586 0.86527 0.92559 1.00761 1.23042 0.97205 0.99181 0.97750 1.22577 0.93785 0.98072 0.99069 0.90436 1.22072 0.90279 0.93420 1.00487 1.60644 1.08439 1.21265 1.41705 1.19546 0.94445 0.83204 0.96088 1.21229 0.92481 0.92853 1.48639 0.91938 1.25001 0.98905 0.95310 0.95425 1.69975 1.35802 0.97469 1.50529 0.86428 0.85096 0.78116 0.77684 1.19664 1.21095 1.20978 0.92311 0.92955 0.93236 0.90776 0.90321 0.89401 0.92772 0.90288 0.89999 0.95773 0.91410 0.85739 0.99677 0.95478 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.82 37.16 0.37 -1.34 16 2 C -0.13 -1.66 4.47 -26.73 -0.12 -1.78 16 3 C 0.08 1.10 3.41 -26.16 -0.09 1.01 16 4 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 5 O -0.38 -5.36 10.81 -35.23 -0.38 -5.74 16 6 C 0.04 0.51 7.72 38.21 0.29 0.81 16 7 C -0.13 -1.84 6.60 -24.72 -0.16 -2.01 16 8 C -0.12 -1.66 3.20 -89.09 -0.29 -1.95 16 9 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 10 C 0.07 1.18 3.84 -3.83 -0.01 1.17 16 11 N -0.69 -14.69 6.38 -115.06 -0.73 -15.42 16 12 C 0.19 5.11 5.44 -4.98 -0.03 5.09 16 13 C -0.51 -14.63 9.32 -34.44 -0.32 -14.95 16 14 H 0.06 1.75 7.81 -52.48 -0.41 1.34 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 17 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H 0.06 0.70 7.89 -51.93 -0.41 0.29 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.07 1.05 7.13 -51.93 -0.37 0.68 16 25 H 0.08 1.02 6.44 -51.93 -0.33 0.69 16 26 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.08 1.26 7.78 -51.93 -0.40 0.86 16 30 H 0.02 0.42 6.29 -51.93 -0.33 0.10 16 31 H 0.07 1.26 7.10 -51.93 -0.37 0.89 16 32 H 0.33 6.62 8.72 -39.29 -0.34 6.28 16 33 H -0.01 -0.41 8.14 -51.92 -0.42 -0.83 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 281.37 15.07 4.24 4.24 Total: -1.00 -30.11 281.37 -7.52 -37.63 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.91 Total: 1.34 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -0.46 Total: -12.48 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.00 Total: -41.71 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.74 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.11 -7.52 -37.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233974676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.319 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds