Wall clock time and date at job start Mon Mar 30 2020 03:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47218 * 2 1 4 4 H 1.08998 * 109.98734 * 54.63242 * 3 2 1 5 5 O 1.43745 * 109.87821 * 293.55027 * 3 2 1 6 6 C 1.44382 * 106.97554 * 214.05833 * 5 3 2 7 7 C 1.55000 * 103.48861 * 40.06459 * 6 5 3 8 8 C 1.54097 * 109.87805 * 175.71876 * 3 2 1 9 9 H 1.09004 * 110.48577 * 240.12895 * 8 3 2 10 10 C 1.52990 * 110.49134 * 2.64442 * 8 3 2 11 11 N 1.46899 * 109.47442 * 184.99896 * 10 8 3 12 12 C 1.46901 * 111.00301 * 180.02562 * 11 10 8 13 13 C 1.50693 * 109.47354 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99788 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00068 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99915 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99838 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46904 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46613 * 119.99953 * 17 15 13 20 20 H 1.48493 * 109.47028 * 239.99642 * 17 15 13 21 21 H 1.09001 * 109.47250 * 59.99081 * 1 2 3 22 22 H 1.08995 * 109.47282 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46749 * 299.99747 * 1 2 3 24 24 H 1.09004 * 109.46749 * 240.00252 * 2 1 3 25 25 H 1.09001 * 109.47460 * 120.00162 * 2 1 3 26 26 H 1.08999 * 110.61481 * 158.56165 * 6 5 3 27 27 H 1.08997 * 110.62085 * 281.56061 * 6 5 3 28 28 H 1.08996 * 110.90766 * 204.77999 * 7 6 5 29 29 H 1.09000 * 110.90626 * 81.16957 * 7 6 5 30 30 H 1.09001 * 109.47128 * 304.99975 * 10 8 3 31 31 H 1.09003 * 109.47178 * 64.99832 * 10 8 3 32 32 H 1.00902 * 110.99740 * 56.04407 * 11 10 8 33 33 H 1.09008 * 109.46521 * 300.00341 * 12 11 10 34 34 H 1.08999 * 109.47057 * 59.99710 * 12 11 10 35 35 H 0.97006 * 119.99576 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9914 0.8353 5 8 1.6938 2.0834 -1.2392 6 6 2.7658 2.9975 -1.5550 7 6 4.0410 2.2090 -1.1619 8 6 3.5772 1.4548 0.1082 9 1 3.8922 1.9883 1.0050 10 6 4.1249 0.0263 0.1162 11 7 5.5764 0.0596 0.3398 12 6 6.1383 -1.2976 0.3531 13 6 7.6255 -1.2233 0.5850 14 1 8.1053 -0.2637 0.7096 15 6 8.3737 -2.3802 0.6371 16 7 7.7895 -3.5486 0.4849 17 14 10.2174 -2.2880 0.9239 18 1 10.6261 -0.8672 1.0635 19 1 10.5626 -3.0263 2.1654 20 1 10.9286 -2.8974 -0.2284 21 1 -0.3634 0.5140 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8900 26 1 2.7711 3.2295 -2.6200 27 1 2.6802 3.9087 -0.9631 28 1 4.8627 2.8874 -0.9330 29 1 4.3235 1.5092 -1.9484 30 1 3.6472 -0.5415 0.9146 31 1 3.9158 -0.4484 -0.8425 32 1 5.7998 0.5523 1.1916 33 1 5.6745 -1.8749 1.1530 34 1 5.9432 -1.7810 -0.6041 35 1 8.3160 -4.3625 0.5212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233974676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:42 Heat of formation + Delta-G solvation = -83.603109 kcal Electronic energy + Delta-G solvation = -14484.626369 eV Core-core repulsion = 12094.969478 eV Total energy + Delta-G solvation = -2389.656891 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82636 -37.19993 -35.03459 -34.33781 -32.85316 -29.78251 -28.45570 -25.48662 -24.42340 -23.34572 -22.59554 -20.52933 -18.50159 -17.53526 -16.75773 -16.71574 -16.33492 -16.20939 -15.09854 -15.04381 -14.43500 -14.21818 -14.07139 -13.61490 -13.46848 -12.89160 -12.80146 -12.67179 -12.43673 -12.37899 -12.08811 -11.83690 -11.74134 -11.53148 -11.37410 -11.21302 -10.67639 -10.52562 -9.09392 -8.23794 -6.35288 1.41061 1.41898 1.55865 2.39462 2.97706 3.09751 3.39428 3.69015 3.79272 4.07427 4.15985 4.23161 4.36686 4.45575 4.51840 4.59135 4.65798 4.79251 4.88866 4.96728 4.98323 5.08806 5.12431 5.19886 5.26035 5.27212 5.30287 5.43021 5.60648 6.00587 6.03173 6.42979 6.71859 6.88909 7.36139 8.88226 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.048285 B = 0.005966 C = 0.005466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.755652 B = 4692.179084 C = 5121.060262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.086 3.914 4 H 0.082 0.918 5 O -0.392 6.392 6 C 0.046 3.954 7 C -0.135 4.135 8 C -0.111 4.111 9 H 0.092 0.908 10 C 0.072 3.928 11 N -0.686 5.686 12 C 0.208 3.792 13 C -0.535 4.535 14 H 0.066 0.934 15 C -0.001 4.001 16 N -0.936 5.936 17 Si 0.975 3.025 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.279 1.279 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.076 0.924 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.051 0.949 32 H 0.335 0.665 33 H -0.039 1.039 34 H -0.004 1.004 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.990 11.492 -0.260 15.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.028 3.972 4 H 0.100 0.900 5 O -0.312 6.312 6 C -0.030 4.030 7 C -0.173 4.173 8 C -0.130 4.130 9 H 0.110 0.890 10 C -0.058 4.058 11 N -0.317 5.317 12 C 0.080 3.920 13 C -0.573 4.573 14 H 0.084 0.916 15 C -0.199 4.199 16 N -0.576 5.576 17 Si 0.800 3.200 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.205 1.205 21 H 0.072 0.928 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.095 0.905 26 H 0.120 0.880 27 H 0.094 0.906 28 H 0.105 0.895 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.152 0.848 33 H -0.022 1.022 34 H 0.014 0.986 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.009 11.377 -1.058 15.866 hybrid contribution 0.802 -0.887 0.953 1.529 sum -10.207 10.489 -0.105 14.636 Atomic orbital electron populations 1.21689 0.94364 1.01868 1.02141 1.21843 0.97393 0.95205 1.02293 1.22795 0.92944 0.94038 0.87421 0.89973 1.88832 1.44159 1.57571 1.40633 1.23706 0.84677 0.92529 1.02123 1.23022 0.98552 0.99055 0.96691 1.22536 0.94767 0.95615 1.00102 0.89003 1.22078 0.88078 0.96031 0.99578 1.60501 1.10836 1.18251 1.42111 1.19190 0.94179 0.85241 0.93349 1.21583 0.93519 0.93227 1.48940 0.91586 1.25991 1.04337 0.94767 0.94772 1.70105 1.37987 0.98339 1.51190 0.85247 0.78395 0.78651 0.77757 1.18512 1.20256 1.20452 0.92816 0.92306 0.91861 0.92711 0.90524 0.88048 0.90551 0.89489 0.92323 0.95574 0.93054 0.84768 1.02186 0.98610 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.82 71.98 0.71 -2.38 16 2 C -0.13 -3.32 4.47 30.60 0.14 -3.19 16 3 C 0.09 2.15 3.41 30.97 0.11 2.26 16 4 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 5 O -0.39 -10.46 10.81 -148.98 -1.61 -12.07 16 6 C 0.05 1.00 7.72 72.67 0.56 1.56 16 7 C -0.14 -3.56 6.60 31.90 0.21 -3.35 16 8 C -0.11 -3.05 3.20 -9.81 -0.03 -3.08 16 9 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 10 C 0.07 2.54 3.84 86.30 0.33 2.88 16 11 N -0.69 -29.48 6.38 -517.95 -3.30 -32.79 16 12 C 0.21 11.34 5.44 85.55 0.47 11.80 16 13 C -0.53 -30.72 9.32 25.60 0.24 -30.48 16 14 H 0.07 3.67 7.81 -2.91 -0.02 3.64 16 15 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 16 N -0.94 -57.14 13.29 21.45 0.28 -56.85 16 17 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 21 H 0.05 1.21 7.89 -2.39 -0.02 1.19 16 22 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 24 H 0.05 1.59 7.13 -2.38 -0.02 1.57 16 25 H 0.08 1.97 6.44 -2.39 -0.02 1.95 16 26 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.81 7.78 -2.39 -0.02 1.79 16 30 H 0.03 0.93 6.29 -2.39 -0.02 0.91 16 31 H 0.05 1.98 7.10 -2.39 -0.02 1.97 16 32 H 0.34 13.45 8.72 -89.69 -0.78 12.66 16 33 H -0.04 -2.30 8.14 -2.38 -0.02 -2.32 16 34 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 35 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -64.37 281.37 0.85 -63.52 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.27 Total: 15.37 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: 3.19 Total: -23.56 kcal Atomic # 7 Polarization: -86.62 SS G_CDS: -3.02 Total: -89.64 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: -1.61 Total: -12.07 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -64.37 0.85 -63.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233974676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.087 kcal (2) G-P(sol) polarization free energy of solvation -64.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds