Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46680 * 2 1 4 4 C 1.52992 * 109.47314 * 120.00069 * 2 1 3 5 5 N 1.46906 * 109.47242 * 174.80006 * 4 2 1 6 6 C 1.47009 * 111.00184 * 284.24151 * 5 4 2 7 7 C 1.53099 * 109.25900 * 177.60741 * 6 5 4 8 8 O 1.43011 * 109.25851 * 56.84621 * 7 6 5 9 9 C 1.43013 * 113.73862 * 301.33369 * 8 7 6 10 10 H 1.09005 * 109.50918 * 298.68972 * 9 8 7 11 11 C 1.50709 * 109.50681 * 178.60616 * 9 8 7 12 12 H 1.08000 * 119.99756 * 239.99449 * 11 9 8 13 13 C 1.37873 * 119.99980 * 59.99633 * 11 9 8 14 14 N 1.31522 * 120.00280 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00038 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47109 * 90.00215 * 15 13 11 17 17 H 1.48505 * 109.47427 * 210.00023 * 15 13 11 18 18 H 1.48498 * 109.47421 * 330.00058 * 15 13 11 19 19 C 1.47011 * 110.99870 * 160.60414 * 5 4 2 20 20 H 1.09001 * 109.47034 * 64.90770 * 1 2 3 21 21 H 1.09004 * 109.46880 * 184.90508 * 1 2 3 22 22 H 1.08998 * 109.47110 * 304.90889 * 1 2 3 23 23 H 1.08997 * 109.47345 * 240.00703 * 2 1 3 24 24 H 1.09004 * 109.46922 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.48038 * 299.99877 * 3 2 1 26 26 H 1.08998 * 109.47368 * 60.00500 * 3 2 1 27 27 H 1.09005 * 109.47207 * 54.80530 * 4 2 1 28 28 H 1.08996 * 109.47339 * 294.80147 * 4 2 1 29 29 H 1.09003 * 109.50553 * 57.66744 * 6 5 4 30 30 H 1.09001 * 109.50270 * 297.53967 * 6 5 4 31 31 H 1.09003 * 109.50467 * 296.91206 * 7 6 5 32 32 H 1.09003 * 109.54154 * 176.80576 * 7 6 5 33 33 H 0.97004 * 119.99490 * 359.97438 * 14 13 11 34 34 H 1.08997 * 109.51121 * 62.46036 * 19 5 4 35 35 H 1.09006 * 109.50991 * 302.32811 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5037 -0.8309 1.1880 6 6 3.9146 -1.8777 0.2411 7 6 5.4431 -1.9172 0.1641 8 8 5.9760 -2.1323 1.4736 9 6 5.5962 -1.1308 2.4214 10 1 5.9706 -0.1604 2.0953 11 6 6.1786 -1.4676 3.7700 12 1 5.5257 -1.6280 4.6152 13 6 7.5447 -1.5708 3.9246 14 7 8.3397 -1.3749 2.8954 15 14 8.2666 -1.9874 5.5963 16 1 8.3900 -3.4614 5.7288 17 1 9.6086 -1.3648 5.7252 18 1 7.3751 -1.4675 6.6641 19 6 4.0692 -1.0833 2.5213 20 1 -0.3633 0.4358 -0.9307 21 1 -0.3633 -1.0239 0.0879 22 1 -0.3633 0.5881 0.8427 23 1 1.8934 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9565 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6027 -1.7186 1.2969 28 1 1.7548 -0.1565 2.1367 29 1 3.5059 -1.6571 -0.7450 30 1 3.5422 -2.8436 0.5824 31 1 5.8124 -0.9696 -0.2281 32 1 5.7541 -2.7291 -0.4934 33 1 7.9649 -1.1582 2.0274 34 1 3.6994 -2.0365 2.8991 35 1 3.7736 -0.2829 3.1997 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259638333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -61.896218 kcal Electronic energy + Delta-G solvation = -15016.374789 eV Core-core repulsion = 12627.659180 eV Total energy + Delta-G solvation = -2388.715609 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.82991 -36.34092 -33.54087 -32.79070 -29.99103 -27.57073 -27.01105 -24.95095 -23.35344 -22.24893 -19.84206 -19.49984 -17.14586 -15.52477 -15.21749 -14.86889 -14.49776 -14.04238 -13.77244 -13.69056 -13.37243 -13.10514 -12.26993 -12.10172 -11.86094 -11.65466 -11.31499 -11.03217 -10.83747 -10.78917 -10.69970 -10.35866 -10.25859 -10.07518 -9.74910 -8.65675 -8.45134 -8.26998 -7.77118 -6.35660 -4.14456 3.45336 3.48729 3.64213 4.29219 4.54865 4.91448 5.00816 5.06058 5.27379 5.52746 5.55113 5.59327 5.71430 5.72441 5.80990 5.90527 5.92851 5.95543 6.04247 6.18083 6.23728 6.26176 6.38046 6.43012 6.50708 6.56913 6.62822 7.16069 7.53754 7.54542 8.10405 8.36919 8.71821 8.89009 9.69009 11.05620 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052630 B = 0.007374 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.884488 B = 3796.167512 C = 4017.170827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.137 4.137 4 C 0.058 3.942 5 N -0.538 5.538 6 C 0.025 3.975 7 C 0.057 3.943 8 O -0.379 6.379 9 C 0.207 3.793 10 H 0.016 0.984 11 C -0.605 4.605 12 H 0.057 0.943 13 C 0.033 3.967 14 N -0.888 5.888 15 Si 1.073 2.927 16 H -0.287 1.287 17 H -0.283 1.283 18 H -0.288 1.288 19 C 0.040 3.960 20 H 0.053 0.947 21 H 0.050 0.950 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.280 0.720 34 H 0.029 0.971 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.982 2.064 -5.301 13.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.194 4.194 4 C -0.070 4.070 5 N -0.262 5.262 6 C -0.104 4.104 7 C -0.022 4.022 8 O -0.298 6.298 9 C 0.152 3.848 10 H 0.033 0.967 11 C -0.643 4.643 12 H 0.075 0.925 13 C -0.176 4.176 14 N -0.523 5.523 15 Si 0.901 3.099 16 H -0.213 1.213 17 H -0.209 1.209 18 H -0.214 1.214 19 C -0.087 4.087 20 H 0.072 0.928 21 H 0.069 0.931 22 H 0.072 0.928 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -10.258 2.118 -4.619 11.448 hybrid contribution -2.150 -0.413 -0.695 2.297 sum -12.408 1.705 -5.314 13.606 Atomic orbital electron populations 1.21828 0.95659 1.01353 1.01529 1.21086 0.94465 0.97231 0.98226 1.21701 1.02549 0.94828 1.00316 1.22180 0.88385 0.98347 0.98084 1.62239 1.08365 1.45670 1.09965 1.22761 0.98381 0.92836 0.96396 1.22387 0.90809 1.00047 0.88913 1.88424 1.72584 1.51838 1.16938 1.19969 0.87745 0.88302 0.88796 0.96689 1.21856 0.94421 1.55675 0.92321 0.92517 1.25872 0.93783 0.93233 1.04672 1.70621 1.38730 1.40651 1.02280 0.83503 0.75775 0.76699 0.73893 1.21346 1.20869 1.21405 1.22816 0.98917 0.99086 0.87890 0.92802 0.93070 0.92771 0.91507 0.91284 0.93816 0.93326 0.95352 0.91290 0.91214 0.95014 0.94038 0.90657 0.90791 0.95288 0.91125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.19 37.16 0.34 -1.19 16 2 C -0.09 -1.17 2.97 -90.62 -0.27 -1.44 16 3 C -0.14 -1.77 9.08 37.16 0.34 -1.43 16 4 C 0.06 0.89 4.39 -3.83 -0.02 0.88 16 5 N -0.54 -10.10 4.12 -234.31 -0.97 -11.07 16 6 C 0.02 0.45 5.47 -3.71 -0.02 0.43 16 7 C 0.06 1.17 7.01 37.21 0.26 1.43 16 8 O -0.38 -10.04 9.14 -35.23 -0.32 -10.36 16 9 C 0.21 5.51 2.26 -27.83 -0.06 5.45 16 10 H 0.02 0.44 8.01 -51.93 -0.42 0.02 16 11 C -0.61 -17.55 8.80 -34.44 -0.30 -17.85 16 12 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 13 C 0.03 0.97 5.40 -17.82 -0.10 0.87 16 14 N -0.89 -27.58 13.53 55.43 0.75 -26.83 16 15 Si 1.07 25.44 29.90 -169.99 -5.08 20.35 16 16 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 19 C 0.04 0.90 4.82 -3.71 -0.02 0.88 16 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.88 6.74 -51.93 -0.35 0.53 16 24 H 0.07 1.04 7.76 -51.93 -0.40 0.64 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.03 0.43 7.99 -51.93 -0.41 0.02 16 28 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 29 H 0.07 1.08 6.74 -51.93 -0.35 0.73 16 30 H 0.03 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.28 8.81 6.47 -40.82 -0.26 8.55 16 34 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 1.52 8.02 -51.93 -0.42 1.10 16 LS Contribution 278.02 15.07 4.19 4.19 Total: -1.00 -31.07 278.02 -7.31 -38.37 By element: Atomic # 1 Polarization: 3.35 SS G_CDS: -6.03 Total: -2.68 kcal Atomic # 6 Polarization: -12.13 SS G_CDS: 0.15 Total: -11.98 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: -0.22 Total: -37.90 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.32 Total: -10.36 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.08 Total: 20.35 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -31.07 -7.31 -38.37 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.522 kcal (2) G-P(sol) polarization free energy of solvation -31.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds