Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46680 * 2 1 4 4 C 1.52992 * 109.47314 * 120.00069 * 2 1 3 5 5 N 1.46906 * 109.47242 * 174.80006 * 4 2 1 6 6 C 1.47009 * 111.00184 * 284.24151 * 5 4 2 7 7 C 1.53099 * 109.25900 * 177.60741 * 6 5 4 8 8 O 1.43011 * 109.25851 * 56.84621 * 7 6 5 9 9 C 1.43013 * 113.73862 * 301.33369 * 8 7 6 10 10 H 1.09005 * 109.50918 * 298.68972 * 9 8 7 11 11 C 1.50709 * 109.50681 * 178.60616 * 9 8 7 12 12 H 1.08000 * 119.99756 * 239.99449 * 11 9 8 13 13 C 1.37873 * 119.99980 * 59.99633 * 11 9 8 14 14 N 1.31522 * 120.00280 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00038 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.47109 * 90.00215 * 15 13 11 17 17 H 1.48505 * 109.47427 * 210.00023 * 15 13 11 18 18 H 1.48498 * 109.47421 * 330.00058 * 15 13 11 19 19 C 1.47011 * 110.99870 * 160.60414 * 5 4 2 20 20 H 1.09001 * 109.47034 * 64.90770 * 1 2 3 21 21 H 1.09004 * 109.46880 * 184.90508 * 1 2 3 22 22 H 1.08998 * 109.47110 * 304.90889 * 1 2 3 23 23 H 1.08997 * 109.47345 * 240.00703 * 2 1 3 24 24 H 1.09004 * 109.46922 * 179.97438 * 3 2 1 25 25 H 1.08997 * 109.48038 * 299.99877 * 3 2 1 26 26 H 1.08998 * 109.47368 * 60.00500 * 3 2 1 27 27 H 1.09005 * 109.47207 * 54.80530 * 4 2 1 28 28 H 1.08996 * 109.47339 * 294.80147 * 4 2 1 29 29 H 1.09003 * 109.50553 * 57.66744 * 6 5 4 30 30 H 1.09001 * 109.50270 * 297.53967 * 6 5 4 31 31 H 1.09003 * 109.50467 * 296.91206 * 7 6 5 32 32 H 1.09003 * 109.54154 * 176.80576 * 7 6 5 33 33 H 0.97004 * 119.99490 * 359.97438 * 14 13 11 34 34 H 1.08997 * 109.51121 * 62.46036 * 19 5 4 35 35 H 1.09006 * 109.50991 * 302.32811 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 7 3.5037 -0.8309 1.1880 6 6 3.9146 -1.8777 0.2411 7 6 5.4431 -1.9172 0.1641 8 8 5.9760 -2.1323 1.4736 9 6 5.5962 -1.1308 2.4214 10 1 5.9706 -0.1604 2.0953 11 6 6.1786 -1.4676 3.7700 12 1 5.5257 -1.6280 4.6152 13 6 7.5447 -1.5708 3.9246 14 7 8.3397 -1.3749 2.8954 15 14 8.2666 -1.9874 5.5963 16 1 8.3900 -3.4614 5.7288 17 1 9.6086 -1.3648 5.7252 18 1 7.3751 -1.4675 6.6641 19 6 4.0692 -1.0833 2.5213 20 1 -0.3633 0.4358 -0.9307 21 1 -0.3633 -1.0239 0.0879 22 1 -0.3633 0.5881 0.8427 23 1 1.8934 -0.5137 -0.8900 24 1 3.1300 1.4426 0.0005 25 1 1.6766 1.9565 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6027 -1.7186 1.2969 28 1 1.7548 -0.1565 2.1367 29 1 3.5059 -1.6571 -0.7450 30 1 3.5422 -2.8436 0.5824 31 1 5.8124 -0.9696 -0.2281 32 1 5.7541 -2.7291 -0.4934 33 1 7.9649 -1.1582 2.0274 34 1 3.6994 -2.0365 2.8991 35 1 3.7736 -0.2829 3.1997 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259638333.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -82.689554 kcal Electronic energy + Delta-G solvation = -15017.276456 eV Core-core repulsion = 12627.659180 eV Total energy + Delta-G solvation = -2389.617276 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.50235 -37.81042 -35.13827 -34.74735 -31.86571 -29.16176 -27.94686 -26.81929 -24.92647 -24.12332 -21.44514 -20.77845 -19.24646 -17.10013 -16.89491 -16.34217 -16.13997 -15.86302 -15.54897 -15.10795 -14.84161 -14.49209 -13.66089 -13.58120 -13.39104 -13.00318 -12.72101 -12.67995 -12.54008 -12.20507 -11.90141 -11.86368 -11.80981 -11.56890 -11.45340 -10.77911 -10.52554 -10.23897 -9.33631 -8.67515 -6.47866 1.53740 1.63314 1.81257 2.55204 2.84755 3.01982 3.55580 3.79598 3.97912 4.08692 4.17054 4.23867 4.27993 4.37558 4.41175 4.59392 4.66781 4.71535 4.74876 4.84175 4.84685 4.92801 5.05360 5.09032 5.15352 5.25583 5.43284 5.51888 5.79902 6.06158 6.07068 6.11770 6.51156 6.78639 7.46386 8.72516 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052630 B = 0.007374 C = 0.006968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.884488 B = 3796.167512 C = 4017.170827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.086 4.086 3 C -0.134 4.134 4 C 0.058 3.942 5 N -0.543 5.543 6 C 0.032 3.968 7 C 0.048 3.952 8 O -0.411 6.411 9 C 0.207 3.793 10 H -0.018 1.018 11 C -0.626 4.626 12 H 0.058 0.942 13 C -0.019 4.019 14 N -0.915 5.915 15 Si 1.124 2.876 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.266 1.266 19 C 0.056 3.944 20 H 0.068 0.932 21 H 0.056 0.944 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.105 0.895 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.100 0.900 33 H 0.264 0.736 34 H 0.019 0.981 35 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.717 1.837 -5.467 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 C -0.192 4.192 4 C -0.070 4.070 5 N -0.268 5.268 6 C -0.096 4.096 7 C -0.030 4.030 8 O -0.331 6.331 9 C 0.151 3.849 10 H 0.000 1.000 11 C -0.663 4.663 12 H 0.076 0.924 13 C -0.221 4.221 14 N -0.551 5.551 15 Si 0.944 3.056 16 H -0.201 1.201 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.072 4.072 20 H 0.087 0.913 21 H 0.075 0.925 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.088 0.912 29 H 0.123 0.877 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.118 0.882 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.030 1.896 -4.809 13.094 hybrid contribution -1.662 -0.320 -0.748 1.851 sum -13.692 1.577 -5.557 14.861 Atomic orbital electron populations 1.21778 0.93409 1.02038 1.02577 1.21071 0.96213 0.96531 0.96674 1.21671 1.00763 0.95374 1.01364 1.22310 0.85820 0.99128 0.99723 1.62226 1.10770 1.45813 1.07988 1.22718 0.96263 0.92682 0.97927 1.22690 0.92873 1.00795 0.86610 1.88295 1.73938 1.51590 1.19283 1.19771 0.90418 0.86646 0.88084 1.00036 1.22284 0.95021 1.55224 0.93782 0.92395 1.27488 0.94732 0.92242 1.07615 1.70760 1.38951 1.43122 1.02240 0.82885 0.75543 0.77191 0.69992 1.20074 1.20454 1.19020 1.22459 0.96098 0.98620 0.90059 0.91254 0.92485 0.92397 0.91348 0.93965 0.91886 0.93232 0.94721 0.91240 0.87696 0.95146 0.94571 0.88236 0.92558 0.96237 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.19 71.98 0.66 -1.79 16 2 C -0.09 -1.97 2.97 -10.80 -0.03 -2.00 16 3 C -0.13 -3.21 9.08 71.98 0.65 -2.56 16 4 C 0.06 1.65 4.39 86.30 0.38 2.03 16 5 N -0.54 -19.92 4.12 -895.23 -3.69 -23.61 16 6 C 0.03 1.11 5.47 86.32 0.47 1.59 16 7 C 0.05 1.96 7.01 72.02 0.50 2.47 16 8 O -0.41 -22.30 9.14 -148.98 -1.36 -23.66 16 9 C 0.21 11.31 2.26 29.88 0.07 11.37 16 10 H -0.02 -1.07 8.01 -2.38 -0.02 -1.09 16 11 C -0.63 -37.02 8.80 25.60 0.23 -36.79 16 12 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 13 C -0.02 -1.13 5.40 84.65 0.46 -0.67 16 14 N -0.92 -58.34 13.53 21.45 0.29 -58.05 16 15 Si 1.12 51.11 29.90 68.60 2.05 53.16 16 16 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 C 0.06 2.50 4.82 86.31 0.42 2.91 16 20 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 21 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.07 1.56 6.74 -2.39 -0.02 1.55 16 24 H 0.04 1.23 7.76 -2.38 -0.02 1.21 16 25 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.03 0.96 7.99 -2.38 -0.02 0.94 16 28 H 0.07 1.99 7.86 -2.39 -0.02 1.97 16 29 H 0.10 2.92 6.74 -2.39 -0.02 2.91 16 30 H 0.03 1.07 8.13 -2.39 -0.02 1.06 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.10 3.55 8.14 -2.39 -0.02 3.54 16 33 H 0.26 17.30 6.47 -92.71 -0.60 16.70 16 34 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 3.15 8.02 -2.38 -0.02 3.14 16 Total: -1.00 -68.31 278.02 2.29 -66.02 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.20 Total: 9.60 kcal Atomic # 6 Polarization: -27.26 SS G_CDS: 3.81 Total: -23.45 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -3.40 Total: -81.66 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -1.36 Total: -23.66 kcal Atomic # 14 Polarization: 51.11 SS G_CDS: 2.05 Total: 53.16 kcal Total: -68.31 2.29 -66.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259638333.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.673 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds