Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 C 1.52996 * 109.47322 * 119.99895 * 2 1 3 5 5 N 1.46900 * 109.46727 * 63.69787 * 4 2 1 6 6 C 1.47027 * 110.99802 * 72.15428 * 5 4 2 7 7 C 1.53097 * 109.25623 * 182.34825 * 6 5 4 8 8 O 1.43014 * 109.29457 * 303.21402 * 7 6 5 9 9 C 1.43018 * 113.73737 * 58.64872 * 8 7 6 10 10 C 1.47013 * 110.99938 * 195.82945 * 5 4 2 11 11 H 1.08998 * 109.50770 * 297.54555 * 10 5 4 12 12 C 1.50697 * 109.54151 * 57.65491 * 10 5 4 13 13 H 1.08000 * 120.00092 * 359.80732 * 12 10 5 14 14 C 1.37877 * 120.00000 * 179.80446 * 12 10 5 15 15 N 1.31513 * 120.00450 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99898 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47279 * 59.99856 * 16 14 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47013 * 299.99503 * 16 14 12 20 20 H 1.09002 * 109.46733 * 299.99823 * 1 2 3 21 21 H 1.08996 * 109.46854 * 59.99731 * 1 2 3 22 22 H 1.08997 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46733 * 240.00177 * 2 1 3 24 24 H 1.09004 * 109.46952 * 178.93706 * 3 2 1 25 25 H 1.09005 * 109.47530 * 298.93747 * 3 2 1 26 26 H 1.09004 * 109.47360 * 58.93955 * 3 2 1 27 27 H 1.09003 * 109.46891 * 303.70576 * 4 2 1 28 28 H 1.08996 * 109.47311 * 183.70124 * 4 2 1 29 29 H 1.09005 * 109.47040 * 62.43206 * 6 5 4 30 30 H 1.09000 * 109.54110 * 302.30673 * 6 5 4 31 31 H 1.08994 * 109.50136 * 183.25996 * 7 6 5 32 32 H 1.08999 * 109.50825 * 63.17378 * 7 6 5 33 33 H 1.09004 * 109.50731 * 61.26266 * 9 8 7 34 34 H 1.08997 * 109.51124 * 181.39299 * 9 8 7 35 35 H 0.96991 * 120.00512 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6247 -2.1296 1.2053 6 6 2.3893 -2.8731 0.1932 7 6 1.8853 -4.3177 0.1403 8 8 1.9935 -4.9039 1.4403 9 6 1.2599 -4.2052 2.4498 10 6 1.7582 -2.7596 2.5269 11 1 2.8051 -2.7512 2.8300 12 6 0.9365 -1.9972 3.5341 13 1 0.3734 -1.1288 3.2254 14 6 0.9035 -2.4082 4.8498 15 7 1.5887 -3.4659 5.2257 16 14 -0.1156 -1.4635 6.0981 17 1 -1.5413 -1.4742 5.6831 18 1 0.0172 -2.1035 7.4316 19 1 0.3679 -0.0613 6.1724 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 0.0191 25 1 1.6923 1.9509 -0.8994 26 1 1.6612 1.9618 0.8803 27 1 1.6235 -0.2471 2.1380 28 1 3.1280 -0.6641 1.2830 29 1 3.4465 -2.8658 0.4587 30 1 2.2550 -2.4048 -0.7818 31 1 2.4876 -4.8875 -0.5672 32 1 0.8429 -4.3282 -0.1780 33 1 0.1991 -4.2116 2.1990 34 1 1.4098 -4.6937 3.4126 35 1 1.5652 -3.7553 6.1511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260014573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -53.896943 kcal Electronic energy + Delta-G solvation = -15340.549043 eV Core-core repulsion = 12952.180309 eV Total energy + Delta-G solvation = -2388.368735 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.67288 -36.10183 -33.67849 -32.61160 -29.81852 -27.16508 -26.67705 -25.25665 -23.26367 -22.25102 -19.50931 -19.05338 -16.57733 -15.62871 -15.07584 -14.62249 -14.49667 -13.93244 -13.62753 -13.51344 -13.23222 -12.70864 -12.10282 -11.89237 -11.79191 -11.39596 -10.98688 -10.83810 -10.73590 -10.54207 -10.49014 -10.33155 -10.29045 -9.94991 -9.43950 -9.06870 -8.66539 -8.34337 -7.21970 -6.11025 -4.14896 3.28275 3.33266 3.35624 4.34125 4.81139 4.95776 5.23150 5.32267 5.42826 5.62801 5.76531 5.87168 5.95887 5.96522 6.07050 6.13843 6.28086 6.35656 6.40628 6.46736 6.54676 6.59837 6.72908 6.84082 6.91529 7.00141 7.33637 7.55269 7.71087 7.92648 8.21099 8.23951 8.55935 8.92070 9.50086 10.97040 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.013181 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.119269 B = 2123.711970 C = 3079.734800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.144 4.144 4 C 0.065 3.935 5 N -0.530 5.530 6 C 0.018 3.982 7 C 0.068 3.932 8 O -0.405 6.405 9 C 0.069 3.931 10 C 0.188 3.812 11 H 0.006 0.994 12 C -0.507 4.507 13 H 0.067 0.933 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.900 3.100 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.277 1.277 20 H 0.049 0.951 21 H 0.035 0.965 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.017 0.983 29 H 0.027 0.973 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.122 0.878 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.129 4.187 -8.552 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.111 4.111 3 C -0.202 4.202 4 C -0.063 4.063 5 N -0.255 5.255 6 C -0.111 4.111 7 C -0.010 4.010 8 O -0.324 6.324 9 C -0.007 4.007 10 C 0.081 3.919 11 H 0.024 0.976 12 C -0.545 4.545 13 H 0.085 0.915 14 C -0.142 4.142 15 N -0.532 5.532 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.086 0.914 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.108 0.892 28 H 0.035 0.965 29 H 0.045 0.955 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.140 0.860 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.480 3.883 -8.455 9.317 hybrid contribution 0.244 0.768 0.882 1.194 sum -0.236 4.650 -7.573 8.890 Atomic orbital electron populations 1.21656 0.94883 1.02563 0.99863 1.21125 0.96647 0.94822 0.98548 1.21811 1.00450 0.96746 1.01231 1.22091 0.96369 0.89663 0.98172 1.62225 1.53847 1.01310 1.08149 1.22726 0.95807 0.95581 0.96947 1.22417 0.99686 0.92354 0.86538 1.87905 1.73414 1.53775 1.17316 1.23133 0.93102 0.93866 0.90590 1.19819 0.96063 0.91782 0.84187 0.97622 1.21028 1.28736 1.12672 0.92084 0.91497 1.24986 0.95555 0.95238 0.98419 1.69831 1.41210 1.24411 1.17776 0.86521 0.80690 0.79886 0.80133 1.20092 1.21254 1.20262 0.93166 0.94558 0.91367 0.92280 0.93295 0.93281 0.92707 0.89193 0.96522 0.95515 0.91485 0.90495 0.93613 0.94881 0.86009 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.09 9.07 37.16 0.34 -1.75 16 2 C -0.09 -1.47 2.92 -90.62 -0.26 -1.73 16 3 C -0.14 -1.95 9.19 37.16 0.34 -1.61 16 4 C 0.07 1.28 4.19 -3.83 -0.02 1.26 16 5 N -0.53 -11.45 3.88 -227.72 -0.88 -12.33 16 6 C 0.02 0.35 5.47 -3.70 -0.02 0.33 16 7 C 0.07 1.28 7.01 37.21 0.26 1.54 16 8 O -0.40 -9.44 10.83 -35.23 -0.38 -9.82 16 9 C 0.07 1.75 6.02 37.21 0.22 1.97 16 10 C 0.19 4.80 1.97 -68.75 -0.14 4.67 16 11 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 12 C -0.51 -13.59 7.72 -34.44 -0.27 -13.86 16 13 H 0.07 1.78 6.64 -52.49 -0.35 1.43 16 14 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 15 N -0.89 -25.14 11.36 55.43 0.63 -24.51 16 16 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 18 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 21 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 22 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 23 H 0.06 0.91 6.60 -51.93 -0.34 0.57 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.09 1.94 5.95 -51.93 -0.31 1.63 16 28 H 0.02 0.33 8.05 -51.93 -0.42 -0.09 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 1.10 6.57 -51.93 -0.34 0.76 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.12 3.35 6.17 -51.93 -0.32 3.03 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 273.21 15.07 4.12 4.12 Total: -1.00 -27.92 273.21 -7.02 -34.93 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.84 Total: -0.66 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: 0.37 Total: -7.66 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.25 Total: -36.84 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: -0.38 Total: -9.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -27.92 -7.02 -34.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.964 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds