Wall clock time and date at job start Mon Mar 30 2020 02:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 C 1.52996 * 109.47322 * 119.99895 * 2 1 3 5 5 N 1.46900 * 109.46727 * 63.69787 * 4 2 1 6 6 C 1.47027 * 110.99802 * 72.15428 * 5 4 2 7 7 C 1.53097 * 109.25623 * 182.34825 * 6 5 4 8 8 O 1.43014 * 109.29457 * 303.21402 * 7 6 5 9 9 C 1.43018 * 113.73737 * 58.64872 * 8 7 6 10 10 C 1.47013 * 110.99938 * 195.82945 * 5 4 2 11 11 H 1.08998 * 109.50770 * 297.54555 * 10 5 4 12 12 C 1.50697 * 109.54151 * 57.65491 * 10 5 4 13 13 H 1.08000 * 120.00092 * 359.80732 * 12 10 5 14 14 C 1.37877 * 120.00000 * 179.80446 * 12 10 5 15 15 N 1.31513 * 120.00450 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99898 * 180.02562 * 14 12 10 17 17 H 1.48494 * 109.47279 * 59.99856 * 16 14 12 18 18 H 1.48501 * 109.47055 * 180.02562 * 16 14 12 19 19 H 1.48502 * 109.47013 * 299.99503 * 16 14 12 20 20 H 1.09002 * 109.46733 * 299.99823 * 1 2 3 21 21 H 1.08996 * 109.46854 * 59.99731 * 1 2 3 22 22 H 1.08997 * 109.47277 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46733 * 240.00177 * 2 1 3 24 24 H 1.09004 * 109.46952 * 178.93706 * 3 2 1 25 25 H 1.09005 * 109.47530 * 298.93747 * 3 2 1 26 26 H 1.09004 * 109.47360 * 58.93955 * 3 2 1 27 27 H 1.09003 * 109.46891 * 303.70576 * 4 2 1 28 28 H 1.08996 * 109.47311 * 183.70124 * 4 2 1 29 29 H 1.09005 * 109.47040 * 62.43206 * 6 5 4 30 30 H 1.09000 * 109.54110 * 302.30673 * 6 5 4 31 31 H 1.08994 * 109.50136 * 183.25996 * 7 6 5 32 32 H 1.08999 * 109.50825 * 63.17378 * 7 6 5 33 33 H 1.09004 * 109.50731 * 61.26266 * 9 8 7 34 34 H 1.08997 * 109.51124 * 181.39299 * 9 8 7 35 35 H 0.96991 * 120.00512 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6247 -2.1296 1.2053 6 6 2.3893 -2.8731 0.1932 7 6 1.8853 -4.3177 0.1403 8 8 1.9935 -4.9039 1.4403 9 6 1.2599 -4.2052 2.4498 10 6 1.7582 -2.7596 2.5269 11 1 2.8051 -2.7512 2.8300 12 6 0.9365 -1.9972 3.5341 13 1 0.3734 -1.1288 3.2254 14 6 0.9035 -2.4082 4.8498 15 7 1.5887 -3.4659 5.2257 16 14 -0.1156 -1.4635 6.0981 17 1 -1.5413 -1.4742 5.6831 18 1 0.0172 -2.1035 7.4316 19 1 0.3679 -0.0613 6.1724 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1299 1.4426 0.0191 25 1 1.6923 1.9509 -0.8994 26 1 1.6612 1.9618 0.8803 27 1 1.6235 -0.2471 2.1380 28 1 3.1280 -0.6641 1.2830 29 1 3.4465 -2.8658 0.4587 30 1 2.2550 -2.4048 -0.7818 31 1 2.4876 -4.8875 -0.5672 32 1 0.8429 -4.3282 -0.1780 33 1 0.1991 -4.2116 2.1990 34 1 1.4098 -4.6937 3.4126 35 1 1.5652 -3.7553 6.1511 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260014573.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:15 Heat of formation + Delta-G solvation = -72.052383 kcal Electronic energy + Delta-G solvation = -15341.336322 eV Core-core repulsion = 12952.180309 eV Total energy + Delta-G solvation = -2389.156013 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42193 -37.66135 -35.50622 -34.35026 -31.66328 -28.84621 -27.86148 -27.23635 -24.91133 -24.02266 -21.16629 -20.59905 -18.59314 -17.41657 -16.85613 -16.37441 -16.06195 -15.60894 -15.34793 -15.13445 -14.79007 -14.26775 -13.86216 -13.37139 -13.11667 -12.87204 -12.77184 -12.64086 -12.45310 -12.26188 -12.03813 -11.86588 -11.74513 -11.57904 -11.10216 -10.96482 -10.68096 -10.23374 -9.01103 -8.18642 -6.30210 1.42032 1.43694 1.51719 2.38835 3.05994 3.13467 3.34905 3.98040 4.12801 4.25714 4.32578 4.40666 4.44911 4.58660 4.64186 4.80606 4.82981 4.92355 4.93030 5.00173 5.06815 5.12812 5.18212 5.29779 5.34758 5.51627 5.57563 5.64448 5.65409 6.00454 6.27923 6.47393 6.66241 6.84312 7.38951 8.88933 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.022610 B = 0.013181 C = 0.009090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.119269 B = 2123.711970 C = 3079.734800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.084 4.084 3 C -0.140 4.140 4 C 0.066 3.934 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.060 3.940 8 O -0.421 6.421 9 C 0.083 3.917 10 C 0.195 3.805 11 H -0.040 1.040 12 C -0.519 4.519 13 H 0.066 0.934 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.964 3.036 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.271 1.271 20 H 0.038 0.962 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.009 0.991 29 H 0.016 0.984 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.055 0.945 33 H 0.029 0.971 34 H 0.093 0.907 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.739 5.348 -10.204 11.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.062 4.062 5 N -0.257 5.257 6 C -0.111 4.111 7 C -0.016 4.016 8 O -0.341 6.341 9 C 0.006 3.994 10 C 0.087 3.913 11 H -0.023 1.023 12 C -0.557 4.557 13 H 0.084 0.916 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.789 3.211 17 H -0.193 1.193 18 H -0.209 1.209 19 H -0.196 1.196 20 H 0.057 0.943 21 H 0.084 0.916 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.111 0.889 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.088 5.054 -10.134 11.377 hybrid contribution 0.484 0.389 1.312 1.452 sum -0.603 5.443 -8.822 10.383 Atomic orbital electron populations 1.21610 0.94694 1.01517 1.00741 1.21084 0.96687 0.95971 0.96584 1.21776 1.00740 0.95026 1.02259 1.22129 0.95841 0.88793 0.99419 1.62240 1.54585 1.02320 1.06529 1.22849 0.94759 0.95821 0.97630 1.22783 1.01233 0.92692 0.84931 1.87859 1.73152 1.54185 1.18867 1.22727 0.92849 0.93516 0.90289 1.19575 0.93050 0.92406 0.86248 1.02255 1.21258 1.28836 1.12782 0.92870 0.91637 1.25796 0.96552 0.96026 1.00289 1.69974 1.42392 1.25702 1.18115 0.85506 0.79265 0.78664 0.77620 1.19350 1.20923 1.19593 0.94309 0.91649 0.93348 0.90949 0.92855 0.90758 0.93243 0.91823 0.97273 0.96614 0.87841 0.86578 0.92651 0.95307 0.88883 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.07 71.98 0.65 -3.11 16 2 C -0.08 -2.48 2.92 -10.79 -0.03 -2.51 16 3 C -0.14 -3.40 9.19 71.98 0.66 -2.73 16 4 C 0.07 2.58 4.19 86.30 0.36 2.94 16 5 N -0.53 -22.90 3.88 -874.36 -3.39 -26.29 16 6 C 0.02 0.65 5.47 86.31 0.47 1.12 16 7 C 0.06 2.16 7.01 72.01 0.50 2.67 16 8 O -0.42 -19.66 10.83 -148.98 -1.61 -21.27 16 9 C 0.08 4.31 6.02 72.02 0.43 4.74 16 10 C 0.19 10.26 1.97 44.18 0.09 10.35 16 11 H -0.04 -2.42 8.14 -2.39 -0.02 -2.44 16 12 C -0.52 -28.54 7.72 25.60 0.20 -28.34 16 13 H 0.07 3.54 6.64 -2.91 -0.02 3.52 16 14 C 0.01 0.69 5.30 84.65 0.45 1.14 16 15 N -0.92 -53.43 11.36 21.45 0.24 -53.19 16 16 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 20 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 21 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.05 1.60 7.71 -2.39 -0.02 1.58 16 23 H 0.07 1.96 6.60 -2.39 -0.02 1.94 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 27 H 0.06 2.80 5.95 -2.39 -0.01 2.79 16 28 H 0.01 0.36 8.05 -2.39 -0.02 0.34 16 29 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.10 3.03 6.57 -2.39 -0.02 3.02 16 31 H 0.12 3.27 8.14 -2.39 -0.02 3.25 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.09 5.35 6.17 -2.39 -0.01 5.34 16 35 H 0.27 14.60 8.31 -92.72 -0.77 13.83 16 Total: -1.00 -61.47 273.21 2.09 -59.38 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 1.04 Total: 9.77 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 3.79 Total: -13.75 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -3.15 Total: -79.48 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: -1.61 Total: -21.27 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -61.47 2.09 -59.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260014573.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.674 kcal (2) G-P(sol) polarization free energy of solvation -61.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds