Wall clock time and date at job start Mon Mar 30 2020 02:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00010 * 2 1 4 4 H 1.09006 * 110.46052 * 195.39980 * 3 2 1 5 5 C 1.54509 * 110.51235 * 72.79729 * 3 2 1 6 6 C 1.54480 * 104.18479 * 241.15098 * 5 3 2 7 7 O 1.44648 * 104.69644 * 336.18232 * 6 5 3 8 8 C 1.44424 * 105.36367 * 40.34872 * 7 6 5 9 9 C 1.46904 * 110.99847 * 236.04793 * 2 1 3 10 10 C 1.52998 * 109.47085 * 67.97545 * 9 2 1 11 11 C 1.53000 * 109.47020 * 187.97174 * 9 2 1 12 12 C 1.50693 * 109.46978 * 307.97150 * 9 2 1 13 13 H 1.07995 * 120.00321 * 0.02562 * 12 9 2 14 14 C 1.37889 * 119.99880 * 179.97438 * 12 9 2 15 15 N 1.31509 * 119.99579 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00035 * 180.02562 * 14 12 9 17 17 H 1.48502 * 109.47144 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46879 * 120.00178 * 16 14 12 19 19 H 1.48499 * 109.47127 * 240.00407 * 16 14 12 20 20 H 1.08996 * 109.47461 * 71.75856 * 1 2 3 21 21 H 1.09003 * 109.47544 * 191.75752 * 1 2 3 22 22 H 1.09004 * 109.47273 * 311.75620 * 1 2 3 23 23 H 1.09008 * 110.50866 * 359.85894 * 5 3 2 24 24 H 1.09003 * 110.51562 * 122.43518 * 5 3 2 25 25 H 1.08993 * 110.37443 * 94.91956 * 6 5 3 26 26 H 1.09001 * 110.36971 * 217.25879 * 6 5 3 27 27 H 1.09003 * 110.37352 * 200.73066 * 8 7 6 28 28 H 1.08997 * 110.46942 * 78.44671 * 8 7 6 29 29 H 1.09002 * 109.47485 * 68.19509 * 10 9 2 30 30 H 1.08998 * 109.47435 * 188.19460 * 10 9 2 31 31 H 1.09007 * 109.47130 * 308.19418 * 10 9 2 32 32 H 1.08998 * 109.47159 * 60.00152 * 11 9 2 33 33 H 1.09002 * 109.47158 * 180.02562 * 11 9 2 34 34 H 1.09005 * 109.47247 * 300.00230 * 11 9 2 35 35 H 0.97005 * 119.99801 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 3.0511 1.3743 -0.2712 5 6 1.7898 2.0302 1.3824 6 6 0.8820 3.2458 1.0912 7 8 1.1090 3.5471 -0.3052 8 6 1.1861 2.2651 -0.9657 9 6 1.9954 -0.7660 -1.1377 10 6 1.6731 -0.0309 -2.4402 11 6 3.5118 -0.9119 -0.9962 12 6 1.3592 -2.1319 -1.1609 13 1 0.6360 -2.4037 -0.4064 14 6 1.6999 -3.0343 -2.1462 15 7 2.5803 -2.7031 -3.0653 16 14 0.9109 -4.7272 -2.1756 17 1 -0.0395 -4.8501 -1.0412 18 1 0.1800 -4.9105 -3.4552 19 1 1.9645 -5.7666 -2.0540 20 1 -0.3634 0.3217 -0.9760 21 1 -0.3634 -1.0061 0.2094 22 1 -0.3634 0.6844 0.7666 23 1 1.2953 1.3391 2.0651 24 1 2.7442 2.3566 1.7957 25 1 -0.1636 2.9871 1.2579 26 1 1.1688 4.0917 1.7159 27 1 1.7050 2.3603 -1.9196 28 1 0.1881 1.8537 -1.1171 29 1 2.2488 0.8934 -2.4879 30 1 1.9321 -0.6644 -3.2886 31 1 0.6087 0.2019 -2.4723 32 1 3.7414 -1.4356 -0.0683 33 1 3.9025 -1.4799 -1.8406 34 1 3.9719 0.0761 -0.9793 35 1 2.8203 -3.3381 -3.7583 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260106494.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:06 Heat of formation + Delta-G solvation = -40.309641 kcal Electronic energy + Delta-G solvation = -15680.781086 eV Core-core repulsion = 13293.001541 eV Total energy + Delta-G solvation = -2387.779545 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.13952 -38.36023 -34.92951 -32.41852 -31.06649 -29.69352 -28.03290 -26.95409 -25.89930 -23.39735 -21.96521 -20.04926 -18.03519 -17.69716 -16.96672 -16.64488 -16.36615 -15.55330 -14.95328 -14.86681 -14.28263 -14.18037 -13.50229 -13.12379 -12.96106 -12.70911 -12.64942 -12.55380 -12.41317 -12.36179 -12.04000 -11.89961 -11.78446 -11.45267 -11.43111 -10.68918 -10.59604 -10.37179 -8.78799 -8.01614 -6.14418 1.41797 1.45734 1.54915 2.44894 2.98956 3.23213 3.54916 3.82640 3.93270 4.13381 4.26353 4.41323 4.58725 4.68211 4.70714 4.74502 4.84147 4.86238 4.98814 5.01610 5.09162 5.15242 5.22146 5.28284 5.37464 5.61024 5.68519 5.77493 5.90423 5.99287 6.34132 6.54362 6.83225 6.98990 7.54569 8.99236 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.053932 B = 0.009283 C = 0.008934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.047745 B = 3015.435864 C = 3133.320676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.526 5.526 3 C 0.047 3.953 4 H 0.079 0.921 5 C -0.141 4.141 6 C 0.043 3.957 7 O -0.399 6.399 8 C 0.013 3.987 9 C 0.225 3.775 10 C -0.160 4.160 11 C -0.116 4.116 12 C -0.508 4.508 13 H 0.055 0.945 14 C 0.019 3.981 15 N -0.908 5.908 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.020 0.980 21 H 0.057 0.943 22 H 0.068 0.932 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.063 0.937 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.031 0.969 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.025 0.975 33 H 0.062 0.938 34 H 0.025 0.975 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 7.764 6.151 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.250 5.250 3 C -0.062 4.062 4 H 0.097 0.903 5 C -0.179 4.179 6 C -0.034 4.034 7 O -0.318 6.318 8 C -0.064 4.064 9 C 0.137 3.863 10 C -0.219 4.219 11 C -0.174 4.174 12 C -0.546 4.546 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.547 5.547 16 Si 0.777 3.223 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.211 1.211 20 H 0.039 0.961 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.084 0.916 29 H 0.049 0.951 30 H 0.081 0.919 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.044 0.956 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.389 7.655 6.344 10.225 hybrid contribution -0.498 -0.961 -1.095 1.540 sum -2.887 6.694 5.248 8.983 Atomic orbital electron populations 1.22252 0.88536 1.01423 0.98956 1.62450 1.07562 1.10389 1.44572 1.23111 0.99373 0.88579 0.95187 0.90288 1.22928 1.01353 0.97046 0.96550 1.23639 0.98996 0.98349 0.82374 1.89075 1.93764 1.27825 1.21158 1.24541 1.00759 0.83948 0.97201 1.18647 0.92096 0.91094 0.84495 1.22492 0.97870 0.98333 1.03199 1.21691 0.97263 0.98024 1.00455 1.21391 1.23766 0.98411 1.11046 0.92641 1.25517 0.95756 1.01317 0.95436 1.69941 1.33397 1.35837 1.15562 0.85630 0.78324 0.80740 0.77617 1.19542 1.21116 1.21084 0.96131 0.92420 0.91314 0.89502 0.89729 0.91828 0.87002 0.89921 0.91617 0.95073 0.91860 0.95346 0.95622 0.91920 0.95581 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.35 7.65 127.69 0.98 2.32 16 2 N -0.53 -21.30 4.47 -845.86 -3.78 -25.08 16 3 C 0.05 1.65 2.59 45.93 0.12 1.77 16 4 H 0.08 2.95 5.85 -2.38 -0.01 2.93 16 5 C -0.14 -3.86 6.17 31.61 0.19 -3.67 16 6 C 0.04 1.06 7.55 72.49 0.55 1.61 16 7 O -0.40 -12.85 11.65 -148.98 -1.74 -14.59 16 8 C 0.01 0.46 5.20 72.48 0.38 0.83 16 9 C 0.22 10.61 0.44 2.78 0.00 10.61 16 10 C -0.16 -7.42 6.80 71.98 0.49 -6.93 16 11 C -0.12 -5.54 8.18 71.98 0.59 -4.95 16 12 C -0.51 -26.52 7.44 25.60 0.19 -26.33 16 13 H 0.06 2.93 6.17 -2.91 -0.02 2.91 16 14 C 0.02 0.98 5.12 84.66 0.43 1.41 16 15 N -0.91 -49.46 9.33 21.45 0.20 -49.26 16 16 Si 0.95 42.72 29.54 68.60 2.03 44.75 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 20 H 0.02 0.79 4.54 -2.39 -0.01 0.78 16 21 H 0.06 2.30 6.37 -2.39 -0.02 2.28 16 22 H 0.07 2.13 6.84 -2.39 -0.02 2.11 16 23 H 0.09 2.36 7.48 -2.38 -0.02 2.34 16 24 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 25 H 0.06 1.46 8.00 -2.39 -0.02 1.45 16 26 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.08 2.95 6.15 -2.39 -0.01 2.93 16 28 H 0.07 2.30 4.82 -2.39 -0.01 2.29 16 29 H 0.03 1.32 5.37 -2.39 -0.01 1.30 16 30 H 0.06 3.31 5.89 -2.39 -0.01 3.30 16 31 H 0.03 1.26 5.70 -2.38 -0.01 1.25 16 32 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 34 H 0.03 1.10 6.19 -2.38 -0.01 1.09 16 35 H 0.26 13.56 8.31 -92.70 -0.77 12.79 16 Total: -1.00 -56.04 251.62 1.71 -54.33 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: 1.08 Total: 13.17 kcal Atomic # 6 Polarization: -27.24 SS G_CDS: 3.92 Total: -23.32 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -3.58 Total: -74.34 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.74 Total: -14.59 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -56.04 1.71 -54.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260106494.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.019 kcal (2) G-P(sol) polarization free energy of solvation -56.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds