Wall clock time and date at job start Mon Mar 30 2020 03:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46923 * 2 1 4 4 H 1.09003 * 109.45932 * 185.22873 * 3 2 1 5 5 N 1.46845 * 109.46075 * 305.19581 * 3 2 1 6 6 C 1.46907 * 111.00250 * 305.85319 * 5 3 2 7 7 C 1.46853 * 111.19397 * 181.76251 * 5 3 2 8 8 C 1.53035 * 109.51974 * 298.25453 * 7 5 3 9 9 C 1.53113 * 109.27859 * 59.18626 * 8 7 5 10 10 C 1.53029 * 109.46354 * 65.25320 * 3 2 1 11 11 O 1.42905 * 109.49966 * 300.77924 * 10 3 2 12 12 C 1.50694 * 109.50755 * 60.86168 * 10 3 2 13 13 H 1.08003 * 119.99927 * 359.97438 * 12 10 3 14 14 C 1.37872 * 120.00439 * 180.02562 * 12 10 3 15 15 N 1.31517 * 120.00023 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00392 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46935 * 90.00050 * 16 14 12 18 18 H 1.48496 * 109.47244 * 209.99931 * 16 14 12 19 19 H 1.48501 * 109.47217 * 329.99932 * 16 14 12 20 20 H 1.09002 * 109.47278 * 169.08309 * 1 2 3 21 21 H 1.09000 * 109.47470 * 49.08111 * 1 2 3 22 22 H 1.09001 * 109.46767 * 289.08068 * 1 2 3 23 23 H 1.08997 * 109.47303 * 120.00623 * 2 1 3 24 24 H 1.09006 * 109.46734 * 239.99738 * 2 1 3 25 25 H 1.08997 * 109.46354 * 66.13436 * 6 5 3 26 26 H 1.08995 * 109.46854 * 186.13333 * 6 5 3 27 27 H 1.09000 * 109.47116 * 306.13364 * 6 5 3 28 28 H 1.09003 * 109.45761 * 178.24361 * 7 5 3 29 29 H 1.08994 * 109.46548 * 58.27578 * 7 5 3 30 30 H 1.09002 * 109.50493 * 299.24020 * 8 7 5 31 31 H 1.09006 * 109.49772 * 179.12351 * 8 7 5 32 32 H 1.09002 * 109.52173 * 182.43758 * 9 8 7 33 33 H 1.09000 * 109.58139 * 62.27700 * 9 8 7 34 34 H 0.96708 * 113.99615 * 179.97438 * 11 10 3 35 35 H 0.97000 * 120.00355 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1259 1.4437 -0.0937 5 7 1.4506 2.1697 -1.1314 6 6 1.6979 1.4650 -2.3965 7 6 1.9478 3.5502 -1.1922 8 6 1.5454 4.2952 0.0826 9 6 2.1353 3.5736 1.2974 10 6 1.6404 2.1246 1.3103 11 8 0.2177 2.1067 1.4429 12 6 2.2631 1.3906 2.4699 13 1 2.8818 0.5237 2.2907 14 6 2.0421 1.8251 3.7596 15 7 1.2882 2.8804 3.9779 16 14 2.8133 0.9149 5.1970 17 1 4.1466 1.4975 5.4938 18 1 1.9398 1.0441 6.3908 19 1 2.9667 -0.5206 4.8490 20 1 -0.3634 -1.0091 -0.1946 21 1 -0.3634 0.6731 -0.7765 22 1 -0.3633 0.3360 0.9712 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.1632 0.5152 -2.3937 26 1 1.3474 2.0769 -3.2277 27 1 2.7664 1.2803 -2.5067 28 1 1.5175 4.0534 -2.0581 29 1 3.0342 3.5414 -1.2802 30 1 0.4587 4.3164 0.1641 31 1 1.9280 5.3152 0.0440 32 1 1.8153 4.0760 2.2103 33 1 3.2235 3.5862 1.2369 34 1 -0.1071 2.5231 2.2531 35 1 1.1324 3.1859 4.8852 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260188623.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:50 Heat of formation + Delta-G solvation = -66.508817 kcal Electronic energy + Delta-G solvation = -15986.841396 eV Core-core repulsion = 13597.925769 eV Total energy + Delta-G solvation = -2388.915626 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.54716 -36.75485 -34.72525 -33.98075 -32.47444 -29.86617 -27.42803 -26.93304 -24.59045 -22.92931 -21.66874 -19.89612 -18.77892 -17.07177 -16.59775 -16.23151 -15.86777 -15.53975 -15.04988 -14.49426 -14.03461 -13.65776 -13.40788 -13.36068 -13.17892 -12.94892 -12.83433 -12.52246 -12.32442 -12.13050 -11.86105 -11.85630 -11.56649 -11.43656 -11.13495 -10.58413 -10.38644 -9.64886 -8.98387 -8.09441 -6.26214 1.39532 1.42862 1.51087 2.41469 3.10500 3.21453 4.08265 4.19886 4.25794 4.33734 4.36087 4.61039 4.66357 4.68287 4.79442 4.86042 4.95718 5.00031 5.06654 5.14831 5.21850 5.34394 5.35608 5.45655 5.63419 5.67844 5.81480 6.02189 6.13992 6.21331 6.44089 6.48667 6.80015 7.44320 7.70335 8.90380 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.036631 B = 0.012678 C = 0.010939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.189697 B = 2207.998977 C = 2559.092088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.099 4.099 3 C 0.109 3.891 4 H 0.016 0.984 5 N -0.536 5.536 6 C 0.024 3.976 7 C 0.063 3.937 8 C -0.107 4.107 9 C -0.137 4.137 10 C 0.260 3.740 11 O -0.563 6.563 12 C -0.551 4.551 13 H 0.048 0.952 14 C 0.032 3.968 15 N -0.910 5.910 16 Si 0.949 3.051 17 H -0.279 1.279 18 H -0.282 1.282 19 H -0.275 1.275 20 H 0.037 0.963 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.048 0.952 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.019 0.981 28 H 0.087 0.913 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.023 0.977 34 H 0.358 0.642 35 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.731 -0.572 -8.165 8.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.137 4.137 3 C 0.001 3.999 4 H 0.034 0.966 5 N -0.261 5.261 6 C -0.124 4.124 7 C -0.065 4.065 8 C -0.145 4.145 9 C -0.175 4.175 10 C 0.220 3.780 11 O -0.369 6.369 12 C -0.590 4.590 13 H 0.066 0.934 14 C -0.168 4.168 15 N -0.551 5.551 16 Si 0.775 3.225 17 H -0.205 1.205 18 H -0.208 1.208 19 H -0.199 1.199 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.077 0.923 23 H 0.066 0.934 24 H 0.075 0.925 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.037 0.963 28 H 0.106 0.894 29 H 0.039 0.961 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.206 0.794 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.203 -0.758 -8.546 8.582 hybrid contribution 1.481 -0.056 1.599 2.180 sum 1.685 -0.814 -6.948 7.195 Atomic orbital electron populations 1.21615 0.94607 0.98690 1.03359 1.21380 0.97917 0.94444 0.99934 1.21518 0.93408 0.94392 0.90571 0.96621 1.61885 1.59134 1.02073 1.03009 1.22451 0.98763 0.99920 0.91289 1.22072 0.96517 0.89410 0.98511 1.21496 1.00746 0.97801 0.94429 1.22127 0.97344 0.99737 0.98312 1.18551 0.79454 0.90104 0.89868 1.86320 1.22889 1.82205 1.45510 1.22008 1.30974 1.13293 0.92719 0.93395 1.25546 0.95177 0.95283 1.00780 1.69712 1.39063 1.24660 1.21660 0.85708 0.78293 0.79119 0.79334 1.20531 1.20787 1.19946 0.94442 0.92476 0.92262 0.93373 0.92455 0.91044 0.90230 0.96274 0.89422 0.96144 0.92610 0.91720 0.91523 0.95806 0.79361 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.96 8.51 71.98 0.61 -4.35 16 2 C -0.10 -3.97 4.95 30.59 0.15 -3.81 16 3 C 0.11 4.69 1.52 44.93 0.07 4.75 16 4 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 5 N -0.54 -19.90 3.58 -897.18 -3.21 -23.11 16 6 C 0.02 0.69 8.65 127.69 1.10 1.80 16 7 C 0.06 2.17 5.46 86.32 0.47 2.64 16 8 C -0.11 -4.17 5.94 30.64 0.18 -3.99 16 9 C -0.14 -6.46 4.73 30.67 0.15 -6.31 16 10 C 0.26 12.67 0.37 -11.49 0.00 12.67 16 11 O -0.56 -28.32 8.65 -148.98 -1.29 -29.61 16 12 C -0.55 -29.44 7.45 25.60 0.19 -29.25 16 13 H 0.05 2.59 6.79 -2.91 -0.02 2.57 16 14 C 0.03 1.68 5.22 84.65 0.44 2.12 16 15 N -0.91 -48.73 9.72 21.45 0.21 -48.52 16 16 Si 0.95 42.71 29.54 68.60 2.03 44.74 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 21 H 0.06 2.23 6.57 -2.39 -0.02 2.22 16 22 H 0.06 2.72 5.71 -2.39 -0.01 2.70 16 23 H 0.05 2.11 6.52 -2.39 -0.02 2.09 16 24 H 0.06 1.97 6.78 -2.38 -0.02 1.95 16 25 H 0.07 2.04 6.12 -2.39 -0.01 2.02 16 26 H 0.08 1.95 7.98 -2.39 -0.02 1.93 16 27 H 0.02 0.54 8.12 -2.39 -0.02 0.52 16 28 H 0.09 2.54 8.01 -2.39 -0.02 2.52 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 2.31 7.80 -2.39 -0.02 2.29 16 31 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 32 H 0.07 3.48 6.17 -2.39 -0.01 3.47 16 33 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.36 19.17 7.14 -74.05 -0.53 18.64 16 35 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 Total: -1.00 -55.18 258.35 1.64 -53.55 By element: Atomic # 1 Polarization: 26.16 SS G_CDS: 0.54 Total: 26.69 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 3.36 Total: -23.73 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -3.00 Total: -71.63 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.29 Total: -29.61 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -55.18 1.64 -53.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260188623.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.963 kcal (2) G-P(sol) polarization free energy of solvation -55.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds