Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.53003 * 109.47197 * 240.00147 * 2 1 3 5 5 N 1.46900 * 109.47132 * 119.99681 * 2 1 3 6 6 C 1.47010 * 111.00274 * 273.92707 * 5 2 1 7 7 C 1.53095 * 109.25641 * 182.39248 * 6 5 2 8 8 O 1.43012 * 109.25955 * 303.14935 * 7 6 5 9 9 C 1.43012 * 113.73769 * 58.67057 * 8 7 6 10 10 C 1.47017 * 110.99725 * 37.56447 * 5 2 1 11 11 H 1.09007 * 109.50388 * 297.53525 * 10 5 2 12 12 C 1.50692 * 109.51246 * 57.62332 * 10 5 2 13 13 H 1.08011 * 119.99808 * 5.98499 * 12 10 5 14 14 C 1.37872 * 120.00445 * 185.98140 * 12 10 5 15 15 N 1.31514 * 119.99903 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00293 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46959 * 90.00392 * 16 14 12 18 18 H 1.48500 * 109.47287 * 210.00276 * 16 14 12 19 19 H 1.48501 * 109.47430 * 330.00655 * 16 14 12 20 20 H 1.08997 * 109.47763 * 299.99836 * 1 2 3 21 21 H 1.09003 * 109.47303 * 60.00653 * 1 2 3 22 22 H 1.09004 * 109.47244 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47296 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47369 * 300.00224 * 3 2 1 25 25 H 1.09005 * 109.47067 * 60.00062 * 3 2 1 26 26 H 1.09000 * 109.46926 * 330.05582 * 4 2 1 27 27 H 1.08997 * 109.47167 * 90.05877 * 4 2 1 28 28 H 1.09002 * 109.46672 * 210.05835 * 4 2 1 29 29 H 1.08999 * 109.50411 * 302.32295 * 6 5 2 30 30 H 1.08997 * 109.51165 * 62.41121 * 6 5 2 31 31 H 1.09000 * 109.50734 * 63.08379 * 7 6 5 32 32 H 1.09002 * 109.50814 * 183.21458 * 7 6 5 33 33 H 1.09007 * 109.50706 * 181.39260 * 9 8 7 34 34 H 1.09006 * 109.50965 * 61.27074 * 9 8 7 35 35 H 0.97001 * 120.00068 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6924 1.1995 6 6 2.1067 0.2294 2.3414 7 6 2.6761 -0.5172 3.5506 8 8 1.8547 -1.6532 3.8333 9 6 1.7483 -2.5723 2.7428 10 6 1.1695 -1.8467 1.5253 11 1 0.1603 -1.5029 1.7524 12 6 1.1276 -2.7888 0.3499 13 1 1.7518 -2.6048 -0.5121 14 6 0.2925 -3.8855 0.3747 15 7 -0.4680 -4.1093 1.4241 16 14 0.2400 -5.0528 -1.0827 17 1 1.2477 -6.1270 -0.8930 18 1 -1.1131 -5.6559 -1.1854 19 1 0.5438 -4.3035 -2.3283 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.3215 -1.4852 -1.5465 27 1 2.1621 -0.0024 -2.0594 28 1 2.9997 -1.1900 -1.0317 29 1 2.7612 1.0630 2.0870 30 1 1.1127 0.6070 2.5810 31 1 3.6909 -0.8478 3.3294 32 1 2.6892 0.1466 4.4151 33 1 1.0903 -3.3950 3.0230 34 1 2.7362 -2.9628 2.4982 35 1 -1.0558 -4.8807 1.4415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = -29.975104 kcal Electronic energy + Delta-G solvation = -15888.525722 eV Core-core repulsion = 13501.194316 eV Total energy + Delta-G solvation = -2387.331406 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.21028 -36.34224 -33.18826 -31.42487 -30.02090 -27.05708 -26.55852 -25.84061 -24.19584 -22.00896 -19.94448 -17.94406 -16.67412 -15.28816 -15.11822 -14.69987 -13.99850 -13.83814 -13.65099 -13.54479 -12.79062 -12.71559 -12.17767 -11.49660 -11.41994 -11.30834 -11.02531 -10.83450 -10.72608 -10.60762 -10.33426 -10.24531 -10.04597 -9.67893 -9.36028 -8.94844 -8.61101 -8.26476 -7.13593 -6.08178 -4.09408 3.27702 3.35217 3.37003 4.36344 4.80123 4.97317 5.25678 5.57070 5.61574 5.77847 5.86038 5.92913 5.98875 6.16312 6.23574 6.31721 6.39614 6.40545 6.47086 6.62117 6.72437 6.75310 6.83946 6.96638 7.18482 7.23066 7.41234 7.59648 7.79409 7.97408 8.24377 8.26996 8.61325 8.98893 9.54463 11.00899 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.014620 C = 0.010779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.834856 B = 1914.685980 C = 2597.127890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 C -0.147 4.147 4 C -0.129 4.129 5 N -0.525 5.525 6 C 0.015 3.985 7 C 0.067 3.933 8 O -0.405 6.405 9 C 0.071 3.929 10 C 0.185 3.815 11 H 0.020 0.980 12 C -0.514 4.514 13 H 0.086 0.914 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.893 3.107 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.273 1.273 20 H 0.035 0.965 21 H 0.039 0.961 22 H 0.096 0.904 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.050 0.950 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.060 0.940 29 H 0.071 0.929 30 H 0.028 0.972 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.032 0.968 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.795 7.203 -1.325 8.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.030 3.970 3 C -0.205 4.205 4 C -0.186 4.186 5 N -0.251 5.251 6 C -0.114 4.114 7 C -0.010 4.010 8 O -0.325 6.325 9 C -0.006 4.006 10 C 0.078 3.922 11 H 0.038 0.962 12 C -0.552 4.552 13 H 0.104 0.896 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.721 3.279 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.198 1.198 20 H 0.054 0.946 21 H 0.058 0.942 22 H 0.114 0.886 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.051 0.949 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.033 6.861 -1.183 8.046 hybrid contribution -0.820 -0.317 -0.764 1.164 sum 3.213 6.544 -1.946 7.546 Atomic orbital electron populations 1.22538 0.96995 1.04628 0.99159 1.20728 0.92756 0.91501 0.92015 1.22155 1.00997 0.96534 1.00776 1.22131 1.02380 0.99522 0.94611 1.62652 1.52920 1.07788 1.01779 1.22798 0.99259 0.96335 0.92979 1.22453 0.94057 0.88513 0.96018 1.87888 1.69833 1.34033 1.40719 1.23091 0.99621 0.91991 0.85864 1.19927 0.90743 0.87308 0.94218 0.96193 1.21594 1.23220 1.07751 1.02669 0.89619 1.25008 0.95414 0.97784 0.96097 1.69924 1.25741 1.28751 1.28796 0.86574 0.77232 0.81233 0.82901 1.20650 1.21365 1.19768 0.94611 0.94231 0.88569 0.92588 0.93134 0.93112 0.90532 0.95143 0.92130 0.91056 0.95415 0.93654 0.90519 0.87077 0.94928 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.50 7.08 37.16 0.26 -3.24 16 2 C 0.12 2.30 0.73 -131.60 -0.10 2.21 16 3 C -0.15 -2.32 7.10 37.16 0.26 -2.06 16 4 C -0.13 -2.45 7.36 37.16 0.27 -2.18 16 5 N -0.53 -11.21 4.36 -212.17 -0.92 -12.14 16 6 C 0.02 0.29 4.41 -3.71 -0.02 0.27 16 7 C 0.07 1.27 7.01 37.21 0.26 1.53 16 8 O -0.41 -9.38 10.83 -35.23 -0.38 -9.76 16 9 C 0.07 1.75 6.09 37.21 0.23 1.98 16 10 C 0.18 4.56 1.26 -68.76 -0.09 4.47 16 11 H 0.02 0.57 6.48 -51.93 -0.34 0.23 16 12 C -0.51 -13.22 5.78 -34.45 -0.20 -13.42 16 13 H 0.09 2.16 4.07 -52.48 -0.21 1.94 16 14 C 0.06 1.55 5.34 -17.82 -0.10 1.46 16 15 N -0.89 -24.82 11.82 55.43 0.66 -24.17 16 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 H 0.03 0.71 7.55 -51.93 -0.39 0.31 16 21 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.10 2.26 5.33 -51.93 -0.28 1.98 16 23 H 0.06 0.85 8.01 -51.93 -0.42 0.43 16 24 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 25 H 0.05 0.77 6.45 -51.93 -0.34 0.43 16 26 H 0.08 1.60 5.77 -51.93 -0.30 1.30 16 27 H 0.03 0.49 7.81 -51.93 -0.41 0.09 16 28 H 0.06 1.19 7.69 -51.93 -0.40 0.80 16 29 H 0.07 1.16 6.14 -51.93 -0.32 0.85 16 30 H 0.03 0.55 7.53 -51.93 -0.39 0.16 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.11 3.01 6.66 -51.93 -0.35 2.66 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 258.52 15.07 3.90 3.90 Total: -1.00 -27.35 258.52 -6.36 -33.71 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -5.38 Total: 1.84 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 0.79 Total: -8.98 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: -0.27 Total: -36.30 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.38 Total: -9.76 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.35 -6.36 -33.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.736 kcal (2) G-P(sol) polarization free energy of solvation -27.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds