Wall clock time and date at job start Mon Mar 30 2020 02:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47008 * 2 1 4 4 C 1.53003 * 109.47197 * 240.00147 * 2 1 3 5 5 N 1.46900 * 109.47132 * 119.99681 * 2 1 3 6 6 C 1.47010 * 111.00274 * 273.92707 * 5 2 1 7 7 C 1.53095 * 109.25641 * 182.39248 * 6 5 2 8 8 O 1.43012 * 109.25955 * 303.14935 * 7 6 5 9 9 C 1.43012 * 113.73769 * 58.67057 * 8 7 6 10 10 C 1.47017 * 110.99725 * 37.56447 * 5 2 1 11 11 H 1.09007 * 109.50388 * 297.53525 * 10 5 2 12 12 C 1.50692 * 109.51246 * 57.62332 * 10 5 2 13 13 H 1.08011 * 119.99808 * 5.98499 * 12 10 5 14 14 C 1.37872 * 120.00445 * 185.98140 * 12 10 5 15 15 N 1.31514 * 119.99903 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 120.00293 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46959 * 90.00392 * 16 14 12 18 18 H 1.48500 * 109.47287 * 210.00276 * 16 14 12 19 19 H 1.48501 * 109.47430 * 330.00655 * 16 14 12 20 20 H 1.08997 * 109.47763 * 299.99836 * 1 2 3 21 21 H 1.09003 * 109.47303 * 60.00653 * 1 2 3 22 22 H 1.09004 * 109.47244 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47296 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47369 * 300.00224 * 3 2 1 25 25 H 1.09005 * 109.47067 * 60.00062 * 3 2 1 26 26 H 1.09000 * 109.46926 * 330.05582 * 4 2 1 27 27 H 1.08997 * 109.47167 * 90.05877 * 4 2 1 28 28 H 1.09002 * 109.46672 * 210.05835 * 4 2 1 29 29 H 1.08999 * 109.50411 * 302.32295 * 6 5 2 30 30 H 1.08997 * 109.51165 * 62.41121 * 6 5 2 31 31 H 1.09000 * 109.50734 * 63.08379 * 7 6 5 32 32 H 1.09002 * 109.50814 * 183.21458 * 7 6 5 33 33 H 1.09007 * 109.50706 * 181.39260 * 9 8 7 34 34 H 1.09006 * 109.50965 * 61.27074 * 9 8 7 35 35 H 0.97001 * 120.00068 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0196 -0.6924 1.1995 6 6 2.1067 0.2294 2.3414 7 6 2.6761 -0.5172 3.5506 8 8 1.8547 -1.6532 3.8333 9 6 1.7483 -2.5723 2.7428 10 6 1.1695 -1.8467 1.5253 11 1 0.1603 -1.5029 1.7524 12 6 1.1276 -2.7888 0.3499 13 1 1.7518 -2.6048 -0.5121 14 6 0.2925 -3.8855 0.3747 15 7 -0.4680 -4.1093 1.4241 16 14 0.2400 -5.0528 -1.0827 17 1 1.2477 -6.1270 -0.8930 18 1 -1.1131 -5.6559 -1.1854 19 1 0.5438 -4.3035 -2.3283 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8901 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 1.3215 -1.4852 -1.5465 27 1 2.1621 -0.0024 -2.0594 28 1 2.9997 -1.1900 -1.0317 29 1 2.7612 1.0630 2.0870 30 1 1.1127 0.6070 2.5810 31 1 3.6909 -0.8478 3.3294 32 1 2.6892 0.1466 4.4151 33 1 1.0903 -3.3950 3.0230 34 1 2.7362 -2.9628 2.4982 35 1 -1.0558 -4.8807 1.4415 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310292.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:21 Heat of formation + Delta-G solvation = -48.661246 kcal Electronic energy + Delta-G solvation = -15889.336014 eV Core-core repulsion = 13501.194316 eV Total energy + Delta-G solvation = -2388.141698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.88992 -38.02489 -35.13205 -33.04388 -31.84107 -28.59420 -28.14152 -27.53943 -26.07717 -23.71093 -21.66117 -19.58149 -18.57882 -17.02871 -16.90534 -16.46260 -15.67398 -15.56574 -15.30863 -15.21539 -14.45842 -14.28211 -13.99203 -13.06494 -12.95993 -12.86748 -12.79365 -12.52208 -12.31652 -12.27454 -12.04771 -11.83613 -11.73222 -11.45137 -11.05722 -10.79519 -10.58733 -10.10810 -8.87163 -8.10783 -6.16890 1.42965 1.44766 1.53536 2.43591 3.10658 3.22665 3.36700 4.10912 4.16505 4.31853 4.36823 4.49523 4.50214 4.67231 4.71325 4.80261 4.86748 4.92372 4.97535 5.00843 5.11998 5.18483 5.25069 5.30101 5.35591 5.51030 5.67902 5.74601 5.84002 6.10060 6.41102 6.54948 6.79482 6.98323 7.50442 8.98401 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.014620 C = 0.010779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.834856 B = 1914.685980 C = 2597.127890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.110 3.890 3 C -0.139 4.139 4 C -0.124 4.124 5 N -0.532 5.532 6 C 0.015 3.985 7 C 0.059 3.941 8 O -0.423 6.423 9 C 0.081 3.919 10 C 0.196 3.804 11 H -0.019 1.019 12 C -0.513 4.513 13 H 0.092 0.908 14 C 0.010 3.990 15 N -0.927 5.927 16 Si 0.951 3.049 17 H -0.278 1.278 18 H -0.291 1.291 19 H -0.262 1.262 20 H 0.028 0.972 21 H 0.062 0.938 22 H 0.053 0.947 23 H 0.067 0.933 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.108 0.892 30 H 0.016 0.984 31 H 0.054 0.946 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 8.960 -2.378 10.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.021 3.979 3 C -0.196 4.196 4 C -0.181 4.181 5 N -0.257 5.257 6 C -0.113 4.113 7 C -0.018 4.018 8 O -0.343 6.343 9 C 0.004 3.996 10 C 0.088 3.912 11 H -0.002 1.002 12 C -0.551 4.551 13 H 0.109 0.891 14 C -0.188 4.188 15 N -0.568 5.568 16 Si 0.777 3.223 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.186 1.186 20 H 0.047 0.953 21 H 0.081 0.919 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.126 0.874 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.132 0.868 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.428 8.640 -2.245 10.447 hybrid contribution -1.229 -0.773 -0.403 1.507 sum 4.199 7.867 -2.648 9.302 Atomic orbital electron populations 1.22402 0.97984 1.02093 0.99941 1.20943 0.92051 0.93799 0.91128 1.22072 1.01692 0.93627 1.02236 1.22025 1.00913 0.99655 0.95553 1.62622 1.51753 1.07945 1.03411 1.22915 0.99470 0.96759 0.92170 1.22820 0.93644 0.87554 0.97777 1.87843 1.71026 1.35203 1.40185 1.22741 0.98434 0.91911 0.86507 1.19616 0.89261 0.88543 0.93770 1.00186 1.21884 1.22603 1.07616 1.03046 0.89052 1.25732 0.95331 0.99433 0.98289 1.70067 1.26730 1.29306 1.30663 0.85648 0.76875 0.79314 0.80443 1.20415 1.21680 1.18610 0.95256 0.91876 0.92753 0.91367 0.91010 0.92471 0.93081 0.91911 0.93057 0.87439 0.96540 0.92786 0.86837 0.90204 0.95348 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.54 7.08 71.98 0.51 -6.03 16 2 C 0.11 4.01 0.73 3.53 0.00 4.01 16 3 C -0.14 -3.80 7.10 71.98 0.51 -3.29 16 4 C -0.12 -4.45 7.36 71.98 0.53 -3.92 16 5 N -0.53 -22.07 4.36 -825.18 -3.59 -25.66 16 6 C 0.02 0.54 4.41 86.31 0.38 0.92 16 7 C 0.06 2.09 7.01 72.01 0.50 2.59 16 8 O -0.42 -19.57 10.83 -148.98 -1.61 -21.18 16 9 C 0.08 4.13 6.09 72.01 0.44 4.56 16 10 C 0.20 9.86 1.26 44.18 0.06 9.91 16 11 H -0.02 -1.12 6.48 -2.38 -0.02 -1.13 16 12 C -0.51 -26.84 5.78 25.60 0.15 -26.69 16 13 H 0.09 4.61 4.07 -2.90 -0.01 4.59 16 14 C 0.01 0.56 5.34 84.65 0.45 1.02 16 15 N -0.93 -53.52 11.82 21.45 0.25 -53.27 16 16 Si 0.95 42.88 29.54 68.60 2.03 44.91 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 20 H 0.03 1.15 7.55 -2.39 -0.02 1.13 16 21 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 22 H 0.05 2.61 5.33 -2.38 -0.01 2.60 16 23 H 0.07 1.73 8.01 -2.39 -0.02 1.71 16 24 H 0.07 1.69 8.11 -2.39 -0.02 1.67 16 25 H 0.06 1.50 6.45 -2.38 -0.02 1.48 16 26 H 0.05 2.08 5.77 -2.39 -0.01 2.06 16 27 H 0.06 1.82 7.81 -2.39 -0.02 1.80 16 28 H 0.05 1.92 7.69 -2.39 -0.02 1.90 16 29 H 0.11 3.06 6.14 -2.39 -0.01 3.04 16 30 H 0.02 0.63 7.53 -2.39 -0.02 0.61 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.08 4.54 6.66 -2.38 -0.02 4.52 16 34 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -60.32 258.52 1.67 -58.65 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 1.06 Total: 13.48 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: 3.53 Total: -16.93 kcal Atomic # 7 Polarization: -75.59 SS G_CDS: -3.34 Total: -78.93 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -1.61 Total: -21.18 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -60.32 1.67 -58.65 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310292.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.988 kcal (2) G-P(sol) polarization free energy of solvation -60.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds