Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.52996 * 109.46649 * 119.99844 * 2 1 3 5 5 H 1.09007 * 109.50664 * 180.17591 * 4 2 1 6 6 C 1.53094 * 109.50954 * 300.30350 * 4 2 1 7 7 O 1.43019 * 109.26191 * 176.78524 * 6 4 2 8 8 C 1.43014 * 113.73836 * 301.33319 * 7 6 4 9 9 C 1.53095 * 109.25908 * 58.66446 * 8 7 6 10 10 H 1.09006 * 109.50496 * 63.09190 * 9 8 7 11 11 C 1.50698 * 109.50834 * 183.21718 * 9 8 7 12 12 H 1.08002 * 120.00303 * 119.77887 * 11 9 8 13 13 C 1.37886 * 119.99986 * 299.78787 * 11 9 8 14 14 N 1.31513 * 119.99937 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99841 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47301 * 59.99723 * 15 13 11 17 17 H 1.48504 * 109.47080 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47114 * 299.99320 * 15 13 11 19 19 N 1.47012 * 109.26028 * 303.15323 * 9 8 7 20 20 C 1.46898 * 111.00005 * 182.39217 * 19 9 8 21 21 H 1.08998 * 109.46865 * 60.00237 * 1 2 3 22 22 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47640 * 300.00235 * 1 2 3 24 24 H 1.09002 * 109.46996 * 239.99869 * 2 1 3 25 25 H 1.08996 * 109.46852 * 174.14547 * 3 2 1 26 26 H 1.08996 * 109.47198 * 294.15102 * 3 2 1 27 27 H 1.09002 * 109.47139 * 54.14795 * 3 2 1 28 28 H 1.09003 * 109.50805 * 296.71870 * 6 4 2 29 29 H 1.09000 * 109.51013 * 56.84820 * 6 4 2 30 30 H 1.09003 * 109.50336 * 298.73444 * 8 7 6 31 31 H 1.09000 * 109.50574 * 178.60544 * 8 7 6 32 32 H 0.96998 * 120.00029 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47281 * 54.27023 * 20 19 9 34 34 H 1.08999 * 109.47132 * 174.26787 * 20 19 9 35 35 H 1.09003 * 109.47088 * 294.26720 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1300 -0.7189 1.2515 6 6 1.5238 -0.0046 2.4998 7 8 1.9407 -0.7254 3.6625 8 6 1.4825 -2.0798 3.6953 9 6 1.9982 -2.8174 2.4569 10 1 3.0876 -2.8486 2.4792 11 6 1.4539 -4.2226 2.4451 12 1 0.8379 -4.5563 1.6231 13 6 1.7422 -5.0824 3.4839 14 7 2.4925 -4.6762 4.4846 15 14 1.0669 -6.8239 3.4696 16 1 1.5627 -7.5373 2.2653 17 1 1.5186 -7.5401 4.6896 18 1 -0.4172 -6.7792 3.4424 19 7 1.5520 -2.1080 1.2491 20 6 1.9788 -2.8160 0.0348 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 3.1249 1.4443 0.1048 26 1 1.7647 1.9252 -0.9377 27 1 1.5936 1.9857 0.8330 28 1 1.9296 1.0065 2.5335 29 1 0.4351 0.0404 2.4704 30 1 0.3926 -2.0952 3.7006 31 1 1.8585 -2.5695 4.5936 32 1 2.6956 -5.2811 5.2152 33 1 1.6361 -3.8499 0.0776 34 1 1.5505 -2.3273 -0.8403 35 1 3.0665 -2.7963 -0.0340 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260928609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -47.238934 kcal Electronic energy + Delta-G solvation = -15512.929287 eV Core-core repulsion = 13124.849266 eV Total energy + Delta-G solvation = -2388.080022 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.12061 -35.63536 -34.40625 -32.38714 -28.88455 -27.57802 -26.82302 -25.33422 -23.26581 -22.81224 -20.04504 -18.35449 -16.55735 -15.62026 -15.36439 -14.75212 -14.07877 -14.00937 -13.83480 -13.57898 -12.73312 -12.58782 -12.32085 -11.98712 -11.81656 -11.44521 -11.11018 -10.97407 -10.83339 -10.68629 -10.61428 -10.29961 -10.08653 -10.04038 -9.47814 -9.05429 -8.64158 -8.30420 -7.21363 -6.10777 -4.14761 3.28525 3.33374 3.35773 4.33871 4.84969 4.89603 5.17061 5.19620 5.30959 5.51313 5.76940 5.80989 5.91536 5.94490 6.04320 6.16334 6.19862 6.27866 6.34706 6.40175 6.52837 6.64147 6.69232 6.77596 6.79537 6.97786 7.32620 7.55177 7.71257 7.92551 8.20801 8.23958 8.56692 8.92079 9.50210 10.97335 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045130 B = 0.009701 C = 0.008646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.276795 B = 2885.689032 C = 3237.797244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.147 4.147 4 C 0.053 3.947 5 H 0.034 0.966 6 C 0.071 3.929 7 O -0.405 6.405 8 C 0.069 3.931 9 C 0.188 3.812 10 H 0.006 0.994 11 C -0.507 4.507 12 H 0.066 0.934 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.902 3.098 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.276 1.276 19 N -0.530 5.530 20 C 0.035 3.965 21 H 0.040 0.960 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.078 0.922 29 H 0.050 0.950 30 H 0.033 0.967 31 H 0.122 0.878 32 H 0.265 0.735 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.971 7.720 -6.722 10.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.057 4.057 5 H 0.052 0.948 6 C -0.007 4.007 7 O -0.324 6.324 8 C -0.007 4.007 9 C 0.081 3.919 10 H 0.024 0.976 11 C -0.546 4.546 12 H 0.085 0.915 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.729 3.271 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.201 1.201 19 N -0.255 5.255 20 C -0.113 4.113 21 H 0.059 0.941 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.096 0.904 29 H 0.068 0.932 30 H 0.051 0.949 31 H 0.139 0.861 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -2.292 7.727 -6.376 10.277 hybrid contribution 0.493 -1.141 -0.202 1.260 sum -1.799 6.585 -6.578 9.480 Atomic orbital electron populations 1.21764 0.94732 1.02854 1.00203 1.21125 0.96734 0.95128 0.97831 1.21881 1.00839 0.96433 1.01332 1.22262 0.96787 0.91412 0.95206 0.94772 1.22589 0.98583 0.94388 0.85139 1.87905 1.76805 1.26802 1.40913 1.23126 0.97109 0.78101 1.02380 1.19841 0.94312 0.92634 0.85085 0.97608 1.21034 1.31712 0.95112 1.06711 0.91547 1.24998 0.94936 0.98941 0.95402 1.69840 1.37271 1.36193 1.09938 0.86498 0.79381 0.83839 0.77354 1.20285 1.21235 1.20116 1.62283 1.59312 1.00114 1.03808 1.22253 0.96789 1.00211 0.92096 0.94102 0.91146 0.92906 0.91382 0.92967 0.93016 0.92545 0.90429 0.93156 0.94885 0.86056 0.92548 0.90430 0.93351 0.97259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.68 37.16 0.32 -1.68 16 2 C -0.09 -1.34 2.31 -90.62 -0.21 -1.55 16 3 C -0.15 -1.83 8.67 37.16 0.32 -1.51 16 4 C 0.05 1.00 1.80 -67.60 -0.12 0.88 16 5 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 6 C 0.07 1.35 5.58 37.21 0.21 1.56 16 7 O -0.41 -9.52 10.83 -35.23 -0.38 -9.90 16 8 C 0.07 1.75 6.02 37.21 0.22 1.98 16 9 C 0.19 4.85 1.97 -68.76 -0.14 4.71 16 10 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 11 C -0.51 -13.76 7.86 -34.44 -0.27 -14.03 16 12 H 0.07 1.78 6.54 -52.49 -0.34 1.44 16 13 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 14 N -0.89 -25.30 11.37 55.43 0.63 -24.67 16 15 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 16 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 N -0.53 -11.56 3.84 -228.00 -0.88 -12.44 16 20 C 0.03 0.69 8.86 60.06 0.53 1.23 16 21 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 1.15 7.61 -51.93 -0.40 0.76 16 23 H 0.05 0.76 6.36 -51.93 -0.33 0.43 16 24 H 0.07 1.02 6.41 -51.93 -0.33 0.69 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.68 6.84 -51.93 -0.36 0.32 16 28 H 0.08 1.28 6.76 -51.93 -0.35 0.93 16 29 H 0.05 0.94 6.27 -51.93 -0.33 0.62 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.12 3.36 6.19 -51.93 -0.32 3.03 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.08 1.63 6.15 -51.93 -0.32 1.31 16 34 H 0.05 0.82 6.38 -51.93 -0.33 0.49 16 35 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 264.77 15.07 3.99 3.99 Total: -1.00 -28.28 264.77 -6.38 -34.66 By element: Atomic # 1 Polarization: 4.72 SS G_CDS: -5.50 Total: -0.78 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 0.78 Total: -6.91 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.24 Total: -37.11 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.38 Total: -9.90 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -28.28 -6.38 -34.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.575 kcal (2) G-P(sol) polarization free energy of solvation -28.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds