Wall clock time and date at job start Mon Mar 30 2020 02:24:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47036 * 2 1 4 4 C 1.52996 * 109.46649 * 119.99844 * 2 1 3 5 5 H 1.09007 * 109.50664 * 180.17591 * 4 2 1 6 6 C 1.53094 * 109.50954 * 300.30350 * 4 2 1 7 7 O 1.43019 * 109.26191 * 176.78524 * 6 4 2 8 8 C 1.43014 * 113.73836 * 301.33319 * 7 6 4 9 9 C 1.53095 * 109.25908 * 58.66446 * 8 7 6 10 10 H 1.09006 * 109.50496 * 63.09190 * 9 8 7 11 11 C 1.50698 * 109.50834 * 183.21718 * 9 8 7 12 12 H 1.08002 * 120.00303 * 119.77887 * 11 9 8 13 13 C 1.37886 * 119.99986 * 299.78787 * 11 9 8 14 14 N 1.31513 * 119.99937 * 359.97438 * 13 11 9 15 15 Si 1.86798 * 119.99841 * 179.97438 * 13 11 9 16 16 H 1.48490 * 109.47301 * 59.99723 * 15 13 11 17 17 H 1.48504 * 109.47080 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47114 * 299.99320 * 15 13 11 19 19 N 1.47012 * 109.26028 * 303.15323 * 9 8 7 20 20 C 1.46898 * 111.00005 * 182.39217 * 19 9 8 21 21 H 1.08998 * 109.46865 * 60.00237 * 1 2 3 22 22 H 1.09001 * 109.47225 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47640 * 300.00235 * 1 2 3 24 24 H 1.09002 * 109.46996 * 239.99869 * 2 1 3 25 25 H 1.08996 * 109.46852 * 174.14547 * 3 2 1 26 26 H 1.08996 * 109.47198 * 294.15102 * 3 2 1 27 27 H 1.09002 * 109.47139 * 54.14795 * 3 2 1 28 28 H 1.09003 * 109.50805 * 296.71870 * 6 4 2 29 29 H 1.09000 * 109.51013 * 56.84820 * 6 4 2 30 30 H 1.09003 * 109.50336 * 298.73444 * 8 7 6 31 31 H 1.09000 * 109.50574 * 178.60544 * 8 7 6 32 32 H 0.96998 * 120.00029 * 180.02562 * 14 13 11 33 33 H 1.08998 * 109.47281 * 54.27023 * 20 19 9 34 34 H 1.08999 * 109.47132 * 174.26787 * 20 19 9 35 35 H 1.09003 * 109.47088 * 294.26720 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 3.1300 -0.7189 1.2515 6 6 1.5238 -0.0046 2.4998 7 8 1.9407 -0.7254 3.6625 8 6 1.4825 -2.0798 3.6953 9 6 1.9982 -2.8174 2.4569 10 1 3.0876 -2.8486 2.4792 11 6 1.4539 -4.2226 2.4451 12 1 0.8379 -4.5563 1.6231 13 6 1.7422 -5.0824 3.4839 14 7 2.4925 -4.6762 4.4846 15 14 1.0669 -6.8239 3.4696 16 1 1.5627 -7.5373 2.2653 17 1 1.5186 -7.5401 4.6896 18 1 -0.4172 -6.7792 3.4424 19 7 1.5520 -2.1080 1.2491 20 6 1.9788 -2.8160 0.0348 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8934 -0.5139 -0.8900 25 1 3.1249 1.4443 0.1048 26 1 1.7647 1.9252 -0.9377 27 1 1.5936 1.9857 0.8330 28 1 1.9296 1.0065 2.5335 29 1 0.4351 0.0404 2.4704 30 1 0.3926 -2.0952 3.7006 31 1 1.8585 -2.5695 4.5936 32 1 2.6956 -5.2811 5.2152 33 1 1.6361 -3.8499 0.0776 34 1 1.5505 -2.3273 -0.8403 35 1 3.0665 -2.7963 -0.0340 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260928609.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:23 Heat of formation + Delta-G solvation = -66.107244 kcal Electronic energy + Delta-G solvation = -15513.747479 eV Core-core repulsion = 13124.849266 eV Total energy + Delta-G solvation = -2388.898213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80337 -37.24029 -36.19003 -34.26537 -30.67304 -29.23890 -27.91345 -27.31469 -24.86416 -24.57027 -21.80117 -19.87891 -18.53436 -17.32553 -17.21760 -16.46300 -15.86749 -15.70365 -15.43650 -14.95070 -14.48391 -14.29501 -13.58462 -13.43672 -13.39497 -12.99945 -12.79262 -12.68411 -12.57765 -12.23824 -12.06974 -11.94424 -11.72991 -11.52305 -11.16385 -10.98969 -10.66490 -10.15896 -9.03215 -8.19436 -6.31748 1.42219 1.44158 1.52292 2.38492 3.04788 3.14835 3.30075 3.86041 4.00142 4.23406 4.37085 4.43648 4.49673 4.56276 4.64106 4.70875 4.85871 4.89194 4.90858 4.93905 5.10775 5.15381 5.18514 5.26272 5.32702 5.48616 5.50453 5.63149 5.65362 5.97997 6.25441 6.44688 6.65444 6.82752 7.37722 8.88195 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.045130 B = 0.009701 C = 0.008646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.276795 B = 2885.689032 C = 3237.797244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 C -0.143 4.143 4 C 0.050 3.950 5 H 0.015 0.985 6 C 0.064 3.936 7 O -0.421 6.421 8 C 0.083 3.917 9 C 0.194 3.806 10 H -0.040 1.040 11 C -0.523 4.523 12 H 0.067 0.933 13 C 0.011 3.989 14 N -0.923 5.923 15 Si 0.968 3.032 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.268 1.268 19 N -0.532 5.532 20 C 0.039 3.961 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.062 0.938 28 H 0.111 0.889 29 H 0.059 0.941 30 H 0.029 0.971 31 H 0.093 0.907 32 H 0.266 0.734 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.985 8.582 -8.221 12.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.059 4.059 5 H 0.033 0.967 6 C -0.012 4.012 7 O -0.341 6.341 8 C 0.006 3.994 9 C 0.086 3.914 10 H -0.023 1.023 11 C -0.561 4.561 12 H 0.085 0.915 13 C -0.188 4.188 14 N -0.562 5.562 15 Si 0.793 3.207 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.193 1.193 19 N -0.257 5.257 20 C -0.109 4.109 21 H 0.087 0.913 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.129 0.871 29 H 0.077 0.923 30 H 0.047 0.953 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -3.310 8.610 -7.897 12.143 hybrid contribution 0.837 -1.323 0.228 1.582 sum -2.473 7.287 -7.668 10.864 Atomic orbital electron populations 1.21727 0.93981 1.01841 1.01633 1.21108 0.97214 0.96408 0.95373 1.21855 1.00767 0.94444 1.03002 1.22410 0.95779 0.90174 0.97507 0.96699 1.22924 0.99398 0.95272 0.83645 1.87855 1.77137 1.25857 1.43255 1.22725 0.96348 0.79194 1.01105 1.19604 0.91371 0.93130 0.87248 1.02294 1.21293 1.31866 0.96065 1.06890 0.91494 1.25842 0.95057 1.03007 0.94915 1.69985 1.38212 1.37537 1.10473 0.85446 0.78897 0.78826 0.77503 1.19560 1.20883 1.19340 1.62274 1.59161 1.01372 1.02899 1.22257 0.96481 0.99687 0.92522 0.91303 0.93360 0.92872 0.91014 0.93064 0.90580 0.91877 0.87132 0.92285 0.95288 0.88872 0.92508 0.91973 0.89866 0.97979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 8.68 71.98 0.63 -2.85 16 2 C -0.08 -2.24 2.31 -10.79 -0.02 -2.27 16 3 C -0.14 -3.03 8.67 71.98 0.62 -2.41 16 4 C 0.05 1.87 1.80 44.92 0.08 1.95 16 5 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 6 C 0.06 2.37 5.58 72.01 0.40 2.78 16 7 O -0.42 -20.01 10.83 -148.98 -1.61 -21.62 16 8 C 0.08 4.35 6.02 72.01 0.43 4.79 16 9 C 0.19 10.34 1.97 44.18 0.09 10.42 16 10 H -0.04 -2.47 8.14 -2.38 -0.02 -2.49 16 11 C -0.52 -28.95 7.86 25.60 0.20 -28.75 16 12 H 0.07 3.62 6.54 -2.91 -0.02 3.60 16 13 C 0.01 0.60 5.30 84.66 0.45 1.05 16 14 N -0.92 -53.70 11.37 21.45 0.24 -53.45 16 15 Si 0.97 43.40 29.54 68.60 2.03 45.42 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 19 N -0.53 -23.25 3.84 -875.24 -3.36 -26.61 16 20 C 0.04 1.52 8.86 127.69 1.13 2.65 16 21 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.46 7.61 -2.39 -0.02 1.45 16 23 H 0.05 1.36 6.36 -2.39 -0.02 1.35 16 24 H 0.07 1.92 6.41 -2.39 -0.02 1.91 16 25 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.06 1.26 6.84 -2.39 -0.02 1.24 16 28 H 0.11 3.36 6.76 -2.39 -0.02 3.34 16 29 H 0.06 2.10 6.27 -2.39 -0.01 2.09 16 30 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 5.39 6.19 -2.39 -0.01 5.38 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.06 2.62 6.15 -2.39 -0.01 2.60 16 34 H 0.08 2.67 6.38 -2.39 -0.02 2.65 16 35 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 Total: -1.00 -62.14 264.77 2.36 -59.78 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: 1.05 Total: 9.12 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 4.01 Total: -12.63 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -3.12 Total: -80.06 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.61 Total: -21.62 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -62.14 2.36 -59.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260928609.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.326 kcal (2) G-P(sol) polarization free energy of solvation -62.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds