Wall clock time and date at job start Mon Mar 30 2020 02:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47032 * 2 1 4 4 C 1.50699 * 109.46920 * 240.00518 * 2 1 3 5 5 H 1.08007 * 119.99688 * 239.99746 * 4 2 1 6 6 C 1.37880 * 120.00364 * 59.99743 * 4 2 1 7 7 N 1.31512 * 119.99491 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99825 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46780 * 90.00342 * 8 6 4 10 10 H 1.48498 * 109.46906 * 209.99706 * 8 6 4 11 11 H 1.48497 * 109.47403 * 330.00229 * 8 6 4 12 12 N 1.46897 * 109.47267 * 120.00162 * 2 1 3 13 13 C 1.46900 * 111.00002 * 299.99785 * 12 2 1 14 14 C 1.53004 * 109.47006 * 179.97438 * 13 12 2 15 15 H 1.09002 * 110.27448 * 59.30142 * 14 13 12 16 16 C 1.54945 * 110.39100 * 181.44733 * 14 13 12 17 17 C 1.55304 * 100.94045 * 155.40253 * 16 14 13 18 18 C 1.54376 * 102.25567 * 325.86882 * 17 16 14 19 19 O 1.43240 * 107.58930 * 21.35352 * 18 17 16 20 20 H 1.09004 * 109.47089 * 299.99975 * 1 2 3 21 21 H 1.09004 * 109.47650 * 59.99705 * 1 2 3 22 22 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47231 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.47388 * 300.00145 * 3 2 1 25 25 H 1.09004 * 109.47163 * 60.00070 * 3 2 1 26 26 H 0.97003 * 119.99735 * 180.02562 * 7 6 4 27 27 H 1.00902 * 110.99805 * 176.04496 * 12 2 1 28 28 H 1.09001 * 109.46624 * 60.00456 * 13 12 2 29 29 H 1.08993 * 109.47653 * 300.00085 * 13 12 2 30 30 H 1.08997 * 111.12470 * 273.31972 * 16 14 13 31 31 H 1.08995 * 111.12619 * 37.48960 * 16 14 13 32 32 H 1.08998 * 110.85543 * 207.67443 * 17 16 14 33 33 H 1.09009 * 111.02412 * 84.13543 * 17 16 14 34 34 H 1.08999 * 109.83271 * 261.84174 * 18 17 16 35 35 H 1.08999 * 109.91049 * 140.90833 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0080 9 1 1.3447 -2.1613 -4.4124 10 1 2.4871 -0.1400 -5.1120 11 1 3.6307 -1.7564 -3.7121 12 7 2.0197 -0.6925 1.1994 13 6 1.5487 -0.0264 2.4210 14 6 2.0773 -0.7750 3.6462 15 1 3.1671 -0.7939 3.6362 16 6 1.5628 -0.1109 4.9482 17 6 1.6363 -1.3058 5.9375 18 6 1.2928 -2.5054 5.0286 19 8 1.5558 -2.1131 3.6763 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 0.7088 1.1616 -3.4843 27 1 3.0262 -0.7626 1.1908 28 1 0.4588 -0.0267 2.4378 29 1 1.9121 1.0010 2.4379 30 1 2.2203 0.6998 5.2619 31 1 0.5375 0.2399 4.8316 32 1 0.8983 -1.1975 6.7323 33 1 2.6389 -1.4085 6.3529 34 1 0.2400 -2.7645 5.1403 35 1 1.9141 -3.3612 5.2927 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261131877.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:02 Heat of formation + Delta-G solvation = -68.107010 kcal Electronic energy + Delta-G solvation = -14902.321176 eV Core-core repulsion = 12513.336247 eV Total energy + Delta-G solvation = -2388.984929 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35424 -38.44984 -34.65828 -32.98053 -32.00580 -29.33350 -27.66251 -27.36910 -25.38619 -22.45474 -22.07615 -20.48402 -18.23698 -17.70569 -17.07087 -16.50379 -16.04022 -15.32155 -15.11141 -14.84144 -14.28804 -13.84484 -13.72089 -13.50467 -12.95954 -12.84158 -12.61333 -12.53773 -12.31526 -12.28755 -12.15231 -12.00069 -11.65512 -11.60600 -11.40781 -10.72012 -10.41484 -10.31342 -8.81823 -8.02223 -6.15396 1.43478 1.45045 1.54557 2.46004 2.99869 3.22230 3.60824 3.68486 4.04159 4.08086 4.24035 4.45689 4.54523 4.66561 4.70240 4.84121 4.88993 4.89843 4.94269 4.98173 5.04409 5.09035 5.16980 5.29419 5.32502 5.59914 5.63790 5.83176 5.97497 6.30462 6.42150 6.69019 6.91039 7.06483 7.54312 8.99008 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.056128 B = 0.007040 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.740355 B = 3976.399537 C = 4197.348550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.226 3.774 3 C -0.154 4.154 4 C -0.517 4.517 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.273 1.273 12 N -0.682 5.682 13 C 0.059 3.941 14 C 0.083 3.917 15 H 0.066 0.934 16 C -0.146 4.146 17 C -0.143 4.143 18 C 0.035 3.965 19 O -0.397 6.397 20 H 0.025 0.975 21 H 0.062 0.938 22 H 0.016 0.984 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.260 0.740 27 H 0.326 0.674 28 H 0.059 0.941 29 H 0.041 0.959 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.598 -0.655 14.857 14.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.136 3.864 3 C -0.214 4.214 4 C -0.555 4.555 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.198 1.198 12 N -0.311 5.311 13 C -0.070 4.070 14 C 0.026 3.974 15 H 0.084 0.916 16 C -0.184 4.184 17 C -0.181 4.181 18 C -0.042 4.042 19 O -0.317 6.317 20 H 0.043 0.957 21 H 0.081 0.919 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.118 0.882 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.968 -1.143 14.531 14.608 hybrid contribution 0.737 0.474 -0.956 1.296 sum 1.705 -0.669 13.575 13.698 Atomic orbital electron populations 1.21636 0.97703 0.98246 0.99448 1.18498 0.91899 0.88918 0.87044 1.22284 0.98191 1.00579 1.00318 1.21342 1.31193 1.11721 0.91265 0.93474 1.25541 0.95419 0.95735 1.01301 1.69936 1.37627 1.23686 1.23578 0.85613 0.78627 0.78268 0.79379 1.20682 1.20751 1.19781 1.60654 1.14786 1.54224 1.01478 1.22134 1.00134 0.94998 0.89759 1.23077 0.97261 0.82206 0.94872 0.91633 1.23280 1.02836 0.99019 0.93303 1.23083 1.03940 0.92852 0.98207 1.23333 1.00890 0.98152 0.81779 1.88582 1.85114 1.31099 1.26868 0.95654 0.91935 0.96491 0.95802 0.91774 0.95176 0.93095 0.85732 0.92253 0.94098 0.88151 0.90457 0.88159 0.89401 0.91522 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.73 8.01 71.98 0.58 -5.16 16 2 C 0.23 11.48 0.69 2.78 0.00 11.48 16 3 C -0.15 -7.46 8.01 71.98 0.58 -6.88 16 4 C -0.52 -29.07 8.22 25.60 0.21 -28.86 16 5 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 6 C 0.02 1.04 5.15 84.66 0.44 1.48 16 7 N -0.91 -51.28 9.35 21.45 0.20 -51.07 16 8 Si 0.95 44.47 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.68 -30.66 6.01 -473.91 -2.85 -33.51 16 13 C 0.06 2.18 4.63 86.30 0.40 2.58 16 14 C 0.08 2.53 3.63 31.26 0.11 2.64 16 15 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 16 C -0.15 -3.14 6.57 32.05 0.21 -2.93 16 17 C -0.14 -2.53 7.02 31.85 0.22 -2.30 16 18 C 0.03 0.84 7.79 72.45 0.56 1.40 16 19 O -0.40 -13.72 10.98 -148.98 -1.64 -15.35 16 20 H 0.02 1.14 6.40 -2.39 -0.02 1.13 16 21 H 0.06 3.44 6.07 -2.38 -0.01 3.43 16 22 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.02 1.09 8.14 -2.39 -0.02 1.08 16 24 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 25 H 0.03 1.28 6.40 -2.39 -0.02 1.27 16 26 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.33 14.28 8.71 -89.69 -0.78 13.50 16 28 H 0.06 2.33 6.30 -2.39 -0.02 2.32 16 29 H 0.04 1.44 6.30 -2.39 -0.02 1.43 16 30 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.69 8.06 -2.39 -0.02 1.67 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -62.24 272.51 1.34 -60.91 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.28 Total: 19.08 kcal Atomic # 6 Polarization: -29.86 SS G_CDS: 3.31 Total: -26.54 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.65 Total: -84.59 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.64 Total: -15.35 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -62.24 1.34 -60.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131877.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.201 kcal (2) G-P(sol) polarization free energy of solvation -62.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds