Wall clock time and date at job start Mon Mar 30 2020 02:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47213 * 2 1 4 4 C 1.50701 * 109.47054 * 119.99753 * 2 1 3 5 5 H 1.07998 * 120.00234 * 117.95290 * 4 2 1 6 6 C 1.37882 * 120.00186 * 297.94732 * 4 2 1 7 7 N 1.31516 * 119.99506 * 3.25176 * 6 4 2 8 8 Si 1.86801 * 120.00059 * 183.25626 * 6 4 2 9 9 H 1.48496 * 109.46961 * 265.02148 * 8 6 4 10 10 H 1.48496 * 109.47101 * 25.02591 * 8 6 4 11 11 H 1.48501 * 109.46864 * 145.02682 * 8 6 4 12 12 N 1.46895 * 109.47316 * 239.99670 * 2 1 3 13 13 C 1.46901 * 110.99761 * 60.00178 * 12 2 1 14 14 C 1.53002 * 109.46991 * 180.02562 * 13 12 2 15 15 H 1.08992 * 109.82090 * 305.55886 * 14 13 12 16 16 C 1.54388 * 109.82848 * 184.58687 * 14 13 12 17 17 C 1.55303 * 102.25266 * 219.12687 * 16 14 13 18 18 C 1.54954 * 100.94082 * 34.13404 * 17 16 14 19 19 O 1.43238 * 109.83388 * 66.45265 * 14 13 12 20 20 H 1.09003 * 109.46748 * 294.12468 * 1 2 3 21 21 H 1.08995 * 109.47218 * 54.12017 * 1 2 3 22 22 H 1.08991 * 109.47088 * 174.12511 * 1 2 3 23 23 H 1.08998 * 109.47608 * 179.97438 * 3 2 1 24 24 H 1.09004 * 109.47287 * 299.99997 * 3 2 1 25 25 H 1.09000 * 109.47275 * 59.99773 * 3 2 1 26 26 H 0.97004 * 119.99485 * 179.97438 * 7 6 4 27 27 H 1.00894 * 110.99790 * 296.04931 * 12 2 1 28 28 H 1.09002 * 109.47223 * 299.99963 * 13 12 2 29 29 H 1.08994 * 109.47442 * 59.99828 * 13 12 2 30 30 H 1.08999 * 110.84558 * 337.31868 * 16 14 13 31 31 H 1.09003 * 110.84693 * 100.93768 * 16 14 13 32 32 H 1.08999 * 111.12317 * 276.21847 * 17 16 14 33 33 H 1.08995 * 111.12722 * 152.05167 * 17 16 14 34 34 H 1.09000 * 110.30825 * 204.64325 * 18 17 16 35 35 H 1.08996 * 110.39510 * 82.51200 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6257 -1.6073 1.1318 6 6 1.7345 -0.2151 2.4824 7 7 0.9592 0.8402 2.6046 8 14 2.4324 -1.0429 4.0046 9 1 1.4414 -2.0104 4.5402 10 1 3.6826 -1.7606 3.6486 11 1 2.7278 -0.0154 5.0353 12 7 2.0197 -0.6925 -1.1993 13 6 1.5487 -0.0264 -2.4210 14 6 2.0773 -0.7750 -3.6462 15 1 3.1618 -0.8645 -3.5852 16 6 1.6839 -0.0176 -4.9327 17 6 1.3254 -1.1773 -5.9014 18 6 0.7118 -2.2042 -4.9165 19 8 1.4852 -2.0776 -3.7127 20 1 -0.3633 0.4201 0.9380 21 1 -0.3633 0.6023 -0.8326 22 1 -0.3633 -1.0222 -0.1052 23 1 3.1300 1.4426 0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 0.7494 1.1884 3.4853 27 1 1.7502 -1.6648 -1.1908 28 1 0.4588 -0.0266 -2.4378 29 1 1.9121 1.0010 -2.4378 30 1 0.8193 0.6224 -4.7570 31 1 2.5251 0.5610 -5.3147 32 1 2.2181 -1.5784 -6.3814 33 1 0.5930 -0.8578 -6.6427 34 1 0.8001 -3.2134 -5.3185 35 1 -0.3337 -1.9654 -4.7214 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131878.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:04 Heat of formation + Delta-G solvation = -51.078253 kcal Electronic energy + Delta-G solvation = -14941.834564 eV Core-core repulsion = 12553.588057 eV Total energy + Delta-G solvation = -2388.246507 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.29192 -36.57002 -32.73340 -31.97734 -30.36387 -27.77868 -25.66646 -25.34734 -23.96398 -21.59635 -20.64129 -18.51628 -16.78660 -16.28502 -15.65698 -14.85178 -14.27813 -14.09882 -13.48249 -13.34920 -12.60278 -12.51428 -11.92533 -11.66548 -11.65751 -11.33333 -11.07001 -10.93753 -10.89129 -10.69721 -10.50554 -10.22222 -10.09361 -9.79743 -9.64634 -9.14841 -8.66810 -8.30817 -7.07557 -5.92368 -3.98643 3.34670 3.41444 3.47114 4.04554 4.47046 4.58882 4.86048 4.96727 5.25512 5.35131 5.38798 5.62842 5.73298 5.76511 5.86725 5.87787 5.99503 6.16068 6.34053 6.58432 6.73377 6.89246 6.98338 7.07801 7.28256 7.34524 7.64624 7.69070 7.91824 8.00992 8.45358 8.65134 8.81200 9.09632 9.67142 11.10606 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.057480 B = 0.007055 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.007565 B = 3967.687370 C = 4138.344476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.231 3.769 3 C -0.125 4.125 4 C -0.493 4.493 5 H 0.060 0.940 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.287 1.287 12 N -0.679 5.679 13 C 0.048 3.952 14 C 0.081 3.919 15 H 0.084 0.916 16 C -0.151 4.151 17 C -0.156 4.156 18 C 0.049 3.951 19 O -0.375 6.375 20 H 0.089 0.911 21 H 0.008 0.992 22 H 0.021 0.979 23 H 0.031 0.969 24 H 0.006 0.994 25 H 0.084 0.916 26 H 0.258 0.742 27 H 0.334 0.666 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 -1.394 -13.426 13.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.142 3.858 3 C -0.183 4.183 4 C -0.531 4.531 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.210 1.210 10 H -0.199 1.199 11 H -0.213 1.213 12 N -0.309 5.309 13 C -0.082 4.082 14 C 0.024 3.976 15 H 0.102 0.898 16 C -0.189 4.189 17 C -0.194 4.194 18 C -0.027 4.027 19 O -0.294 6.294 20 H 0.107 0.893 21 H 0.027 0.973 22 H 0.040 0.960 23 H 0.051 0.949 24 H 0.025 0.975 25 H 0.102 0.898 26 H 0.068 0.932 27 H 0.151 0.849 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.044 -1.102 -13.102 13.148 hybrid contribution -0.737 -0.434 0.636 1.066 sum -0.692 -1.537 -12.466 12.580 Atomic orbital electron populations 1.22444 1.00610 0.97937 1.01385 1.18555 0.89119 0.91587 0.86578 1.21805 0.99048 0.97727 0.99761 1.21098 1.31874 1.10479 0.89683 0.92181 1.24880 0.95149 0.95215 0.98864 1.69826 1.36681 1.23638 1.23028 0.86512 0.79419 0.79003 0.82632 1.20985 1.19866 1.21321 1.60818 1.63034 1.05983 1.01054 1.22296 0.97108 0.98112 0.90709 1.22944 0.98133 0.82374 0.94193 0.89769 1.23162 1.02378 0.98223 0.95113 1.23245 1.01434 0.96374 0.98314 1.23315 0.95244 0.99212 0.84960 1.88473 1.66970 1.32976 1.41031 0.89275 0.97308 0.96014 0.94938 0.97516 0.89767 0.93165 0.84930 0.95739 0.90810 0.90554 0.90196 0.90603 0.90383 0.90272 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.11 7.91 37.16 0.29 -3.82 16 2 C 0.23 5.87 0.69 -132.76 -0.09 5.78 16 3 C -0.13 -3.13 7.99 37.16 0.30 -2.83 16 4 C -0.49 -13.76 8.22 -34.44 -0.28 -14.05 16 5 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 6 C 0.06 1.64 5.13 -17.82 -0.09 1.55 16 7 N -0.89 -25.07 9.33 55.43 0.52 -24.55 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 N -0.68 -15.40 6.08 -101.14 -0.61 -16.01 16 13 C 0.05 0.91 4.46 -3.82 -0.02 0.90 16 14 C 0.08 1.29 3.76 -26.00 -0.10 1.19 16 15 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 16 C -0.15 -1.82 6.54 -24.78 -0.16 -1.98 16 17 C -0.16 -1.62 7.16 -24.48 -0.18 -1.79 16 18 C 0.05 0.62 7.78 38.19 0.30 0.92 16 19 O -0.38 -6.29 10.61 -35.23 -0.37 -6.67 16 20 H 0.09 2.43 5.98 -51.93 -0.31 2.12 16 21 H 0.01 0.19 6.73 -51.93 -0.35 -0.16 16 22 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.01 0.14 6.40 -51.93 -0.33 -0.20 16 25 H 0.08 2.27 6.04 -51.93 -0.31 1.96 16 26 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.33 7.72 8.34 -39.29 -0.33 7.39 16 28 H 0.02 0.49 6.44 -51.93 -0.33 0.15 16 29 H 0.07 1.40 6.30 -51.93 -0.33 1.07 16 30 H 0.08 0.91 7.85 -51.93 -0.41 0.51 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -28.87 271.86 -7.06 -35.93 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.63 Total: 4.75 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.03 Total: -14.15 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: -0.10 Total: -40.57 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: -0.37 Total: -6.67 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.87 -7.06 -35.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131878.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.153 kcal (2) G-P(sol) polarization free energy of solvation -28.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds