Wall clock time and date at job start Mon Mar 30 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47544 * 2 1 4 4 H 1.08997 * 109.48486 * 305.02677 * 3 2 1 5 5 C 1.53095 * 109.48323 * 185.00380 * 3 2 1 6 6 C 1.53177 * 109.16395 * 182.40963 * 5 3 2 7 7 C 1.50700 * 109.54425 * 176.93368 * 6 5 3 8 8 H 1.07996 * 120.00165 * 265.11661 * 7 6 5 9 9 C 1.37881 * 119.99655 * 85.11087 * 7 6 5 10 10 N 1.31518 * 119.99471 * 174.29179 * 9 7 6 11 11 Si 1.86795 * 120.00255 * 354.29644 * 9 7 6 12 12 H 1.48499 * 109.47010 * 87.27715 * 11 9 7 13 13 H 1.48504 * 109.47194 * 207.27387 * 11 9 7 14 14 H 1.48494 * 109.47418 * 327.27254 * 11 9 7 15 15 N 1.46899 * 109.53982 * 297.11083 * 6 5 3 16 16 C 1.46898 * 111.00201 * 177.65160 * 15 6 5 17 17 C 1.53171 * 109.03697 * 56.97463 * 6 5 3 18 18 C 1.53088 * 109.16690 * 303.02021 * 17 6 5 19 19 O 1.42898 * 109.47944 * 65.05812 * 3 2 1 20 20 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46814 * 300.00116 * 1 2 3 22 22 H 1.09000 * 109.47028 * 60.00039 * 1 2 3 23 23 H 1.09003 * 109.47528 * 239.99727 * 2 1 3 24 24 H 1.09000 * 109.47535 * 119.99815 * 2 1 3 25 25 H 1.08997 * 109.52156 * 62.49760 * 5 3 2 26 26 H 1.09001 * 109.57006 * 302.34473 * 5 3 2 27 27 H 0.96993 * 119.99840 * 180.02562 * 10 9 7 28 28 H 1.00898 * 111.00383 * 53.69197 * 15 6 5 29 29 H 1.08995 * 109.47610 * 173.99770 * 16 15 6 30 30 H 1.09006 * 109.46829 * 293.99390 * 16 15 6 31 31 H 1.09001 * 109.47044 * 53.99194 * 16 15 6 32 32 H 1.08995 * 109.52596 * 62.92917 * 17 6 5 33 33 H 1.09004 * 109.52658 * 183.11538 * 17 6 5 34 34 H 1.08999 * 109.48389 * 297.62569 * 18 17 6 35 35 H 1.09000 * 109.49212 * 177.59751 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9819 -0.8414 5 6 3.5659 1.4445 -0.1259 6 6 4.0735 2.8884 -0.0646 7 6 5.5798 2.8957 -0.1121 8 1 6.1488 2.9279 0.8053 9 6 6.2313 2.8610 -1.3267 10 7 7.5402 2.9805 -1.3744 11 14 5.2551 2.6446 -2.9045 12 1 4.8095 3.9728 -3.3969 13 1 6.1109 1.9976 -3.9313 14 1 4.0690 1.7914 -2.6397 15 7 3.5422 3.6449 -1.2062 16 6 3.9647 5.0507 -1.1487 17 6 3.5971 3.5305 1.2419 18 6 2.0702 3.4479 1.3149 19 8 1.6634 2.0811 1.2215 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8534 0.9973 -1.0774 26 1 4.0005 0.8705 0.6925 27 1 7.9986 2.9565 -2.2288 28 1 2.5370 3.5710 -1.2527 29 1 3.6483 5.5626 -2.0575 30 1 3.5089 5.5319 -0.2833 31 1 5.0501 5.1006 -1.0626 32 1 4.0315 2.9990 2.0886 33 1 3.9070 4.5752 1.2687 34 1 1.6357 4.0136 0.4907 35 1 1.7283 3.8650 2.2621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261139319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:58 Heat of formation + Delta-G solvation = -48.253323 kcal Electronic energy + Delta-G solvation = -15777.357608 eV Core-core repulsion = 13389.233599 eV Total energy + Delta-G solvation = -2388.124009 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53217 -35.88170 -33.59377 -31.97750 -30.58132 -29.39172 -26.30935 -24.48600 -22.92109 -22.80201 -20.66862 -18.37426 -16.55787 -15.96883 -15.80043 -14.96488 -14.60586 -13.98525 -13.70306 -13.44090 -13.19007 -12.75312 -12.36822 -12.09405 -11.75773 -11.43109 -11.08666 -10.97133 -10.65794 -10.54710 -10.47801 -10.25344 -9.98063 -9.95323 -9.50530 -9.45156 -8.60097 -8.30775 -7.28603 -5.97265 -4.07211 3.68613 3.72153 3.92182 4.23635 4.75584 5.10809 5.13342 5.35632 5.40485 5.48896 5.55875 5.68876 5.77046 5.85620 5.94454 6.06950 6.14891 6.16038 6.21834 6.26339 6.37738 6.43426 6.51908 6.69284 6.81072 6.91156 6.97034 7.24025 7.62471 7.75392 7.82833 8.25618 8.59934 8.97865 9.66123 11.10206 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.012926 C = 0.011462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.640365 B = 2165.720397 C = 2442.201631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.082 3.918 4 H 0.050 0.950 5 C -0.138 4.138 6 C 0.212 3.788 7 C -0.519 4.519 8 H 0.071 0.929 9 C 0.073 3.927 10 N -0.902 5.902 11 Si 0.972 3.028 12 H -0.295 1.295 13 H -0.348 1.348 14 H -0.273 1.273 15 N -0.677 5.677 16 C 0.029 3.971 17 C -0.169 4.169 18 C 0.060 3.940 19 O -0.385 6.385 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.262 0.738 28 H 0.317 0.683 29 H 0.045 0.955 30 H 0.015 0.985 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.036 0.964 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 -0.969 1.767 12.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.153 4.153 3 C 0.025 3.975 4 H 0.068 0.932 5 C -0.177 4.177 6 C 0.123 3.877 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.130 4.130 10 N -0.538 5.538 11 Si 0.812 3.188 12 H -0.224 1.224 13 H -0.282 1.282 14 H -0.200 1.200 15 N -0.309 5.309 16 C -0.120 4.120 17 C -0.208 4.208 18 C -0.016 4.016 19 O -0.304 6.304 20 H 0.067 0.933 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.136 0.864 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.107 0.893 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.662 -1.225 1.415 11.811 hybrid contribution -0.715 0.501 -0.316 0.929 sum -12.377 -0.724 1.099 12.447 Atomic orbital electron populations 1.21721 0.96009 1.00843 1.01886 1.21541 0.95826 0.95402 1.02513 1.22321 0.96182 0.92919 0.86077 0.93241 1.22641 0.92258 0.99730 1.03026 1.19022 0.96062 0.88720 0.83899 1.20673 0.87203 1.53315 0.94436 0.91099 1.25174 0.94782 0.92503 1.00575 1.69997 1.08603 1.48875 1.26370 0.85289 0.76850 0.77781 0.78868 1.22363 1.28196 1.20044 1.60256 1.13660 1.11882 1.45152 1.22177 1.03765 0.88196 0.97854 1.22773 0.94047 1.02147 1.01827 1.22563 0.95742 0.82974 1.00366 1.87809 1.78759 1.24652 1.39201 0.93299 0.92230 0.93246 0.90887 0.91344 0.90451 0.91450 0.92901 0.86441 0.93612 0.96614 0.89345 0.91469 0.91423 0.94543 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 37.16 0.36 -1.52 16 2 C -0.12 -1.72 5.64 -26.73 -0.15 -1.87 16 3 C 0.08 1.44 2.38 -26.68 -0.06 1.38 16 4 H 0.05 0.86 6.67 -51.93 -0.35 0.51 16 5 C -0.14 -2.87 4.12 -26.59 -0.11 -2.98 16 6 C 0.21 4.70 0.26 -132.57 -0.04 4.66 16 7 C -0.52 -14.11 7.67 -34.44 -0.26 -14.37 16 8 H 0.07 2.13 8.05 -52.49 -0.42 1.71 16 9 C 0.07 2.09 4.68 -17.82 -0.08 2.00 16 10 N -0.90 -27.62 13.96 55.43 0.77 -26.84 16 11 Si 0.97 24.73 23.43 -169.99 -3.98 20.75 16 12 H -0.30 -7.41 6.57 56.52 0.37 -7.03 16 13 H -0.35 -9.32 7.11 56.52 0.40 -8.92 16 14 H -0.27 -6.57 5.09 56.52 0.29 -6.28 16 15 N -0.68 -14.22 2.36 -108.18 -0.25 -14.47 16 16 C 0.03 0.59 8.36 60.06 0.50 1.09 16 17 C -0.17 -3.29 4.57 -26.60 -0.12 -3.41 16 18 C 0.06 1.01 6.58 37.20 0.24 1.25 16 19 O -0.38 -6.83 9.94 -35.23 -0.35 -7.18 16 20 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 21 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.08 1.72 5.44 -51.93 -0.28 1.44 16 26 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 27 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 28 H 0.32 5.94 5.55 -39.29 -0.22 5.72 16 29 H 0.05 0.84 8.13 -51.93 -0.42 0.42 16 30 H 0.02 0.28 6.56 -51.93 -0.34 -0.06 16 31 H 0.09 2.06 6.21 -51.93 -0.32 1.74 16 32 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 33 H 0.07 1.31 6.36 -51.93 -0.33 0.98 16 34 H 0.04 0.58 6.97 -51.93 -0.36 0.21 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 255.61 15.07 3.85 3.85 Total: -1.00 -29.93 255.61 -5.37 -35.30 By element: Atomic # 1 Polarization: 8.06 SS G_CDS: -5.69 Total: 2.37 kcal Atomic # 6 Polarization: -14.06 SS G_CDS: 0.28 Total: -13.77 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.52 Total: -41.32 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.35 Total: -7.18 kcal Atomic # 14 Polarization: 24.73 SS G_CDS: -3.98 Total: 20.75 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.93 -5.37 -35.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.952 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds