Wall clock time and date at job start Mon Mar 30 2020 03:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47544 * 2 1 4 4 H 1.08997 * 109.48486 * 305.02677 * 3 2 1 5 5 C 1.53095 * 109.48323 * 185.00380 * 3 2 1 6 6 C 1.53177 * 109.16395 * 182.40963 * 5 3 2 7 7 C 1.50700 * 109.54425 * 176.93368 * 6 5 3 8 8 H 1.07996 * 120.00165 * 265.11661 * 7 6 5 9 9 C 1.37881 * 119.99655 * 85.11087 * 7 6 5 10 10 N 1.31518 * 119.99471 * 174.29179 * 9 7 6 11 11 Si 1.86795 * 120.00255 * 354.29644 * 9 7 6 12 12 H 1.48499 * 109.47010 * 87.27715 * 11 9 7 13 13 H 1.48504 * 109.47194 * 207.27387 * 11 9 7 14 14 H 1.48494 * 109.47418 * 327.27254 * 11 9 7 15 15 N 1.46899 * 109.53982 * 297.11083 * 6 5 3 16 16 C 1.46898 * 111.00201 * 177.65160 * 15 6 5 17 17 C 1.53171 * 109.03697 * 56.97463 * 6 5 3 18 18 C 1.53088 * 109.16690 * 303.02021 * 17 6 5 19 19 O 1.42898 * 109.47944 * 65.05812 * 3 2 1 20 20 H 1.08994 * 109.47225 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.46814 * 300.00116 * 1 2 3 22 22 H 1.09000 * 109.47028 * 60.00039 * 1 2 3 23 23 H 1.09003 * 109.47528 * 239.99727 * 2 1 3 24 24 H 1.09000 * 109.47535 * 119.99815 * 2 1 3 25 25 H 1.08997 * 109.52156 * 62.49760 * 5 3 2 26 26 H 1.09001 * 109.57006 * 302.34473 * 5 3 2 27 27 H 0.96993 * 119.99840 * 180.02562 * 10 9 7 28 28 H 1.00898 * 111.00383 * 53.69197 * 15 6 5 29 29 H 1.08995 * 109.47610 * 173.99770 * 16 15 6 30 30 H 1.09006 * 109.46829 * 293.99390 * 16 15 6 31 31 H 1.09001 * 109.47044 * 53.99194 * 16 15 6 32 32 H 1.08995 * 109.52596 * 62.92917 * 17 6 5 33 33 H 1.09004 * 109.52658 * 183.11538 * 17 6 5 34 34 H 1.08999 * 109.48389 * 297.62569 * 18 17 6 35 35 H 1.09000 * 109.49212 * 177.59751 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9819 -0.8414 5 6 3.5659 1.4445 -0.1259 6 6 4.0735 2.8884 -0.0646 7 6 5.5798 2.8957 -0.1121 8 1 6.1488 2.9279 0.8053 9 6 6.2313 2.8610 -1.3267 10 7 7.5402 2.9805 -1.3744 11 14 5.2551 2.6446 -2.9045 12 1 4.8095 3.9728 -3.3969 13 1 6.1109 1.9976 -3.9313 14 1 4.0690 1.7914 -2.6397 15 7 3.5422 3.6449 -1.2062 16 6 3.9647 5.0507 -1.1487 17 6 3.5971 3.5305 1.2419 18 6 2.0702 3.4479 1.3149 19 8 1.6634 2.0811 1.2215 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 3.8534 0.9973 -1.0774 26 1 4.0005 0.8705 0.6925 27 1 7.9986 2.9565 -2.2288 28 1 2.5370 3.5710 -1.2527 29 1 3.6483 5.5626 -2.0575 30 1 3.5089 5.5319 -0.2833 31 1 5.0501 5.1006 -1.0626 32 1 4.0315 2.9990 2.0886 33 1 3.9070 4.5752 1.2687 34 1 1.6357 4.0136 0.4907 35 1 1.7283 3.8650 2.2621 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261139319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:58 Heat of formation + Delta-G solvation = -69.272494 kcal Electronic energy + Delta-G solvation = -15778.269068 eV Core-core repulsion = 13389.233599 eV Total energy + Delta-G solvation = -2389.035468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.07863 -37.47963 -34.85036 -34.12244 -32.23000 -30.75991 -28.15325 -26.13728 -24.44622 -24.30963 -22.02094 -20.10831 -18.63638 -17.43467 -17.30720 -16.51733 -16.40144 -15.46300 -15.35111 -14.93962 -14.56088 -14.42597 -13.98321 -13.68078 -13.36459 -12.87196 -12.58877 -12.43493 -12.28606 -12.11977 -12.06333 -11.88179 -11.76213 -11.56730 -11.52274 -10.97645 -10.54020 -10.11257 -9.01584 -8.20390 -6.32251 1.62692 1.65508 1.88310 2.63736 2.91006 3.12098 3.51617 3.95336 4.10545 4.13460 4.23266 4.27817 4.39679 4.49026 4.55270 4.62853 4.73686 4.76960 4.87094 4.94059 5.06739 5.15317 5.15648 5.26996 5.28370 5.34830 5.47490 5.52268 5.71951 5.92579 6.36948 6.42703 6.58821 6.86800 7.44702 8.90581 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.034279 B = 0.012926 C = 0.011462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.640365 B = 2165.720397 C = 2442.201631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.089 3.911 4 H 0.061 0.939 5 C -0.136 4.136 6 C 0.211 3.789 7 C -0.513 4.513 8 H 0.025 0.975 9 C 0.023 3.977 10 N -0.954 5.954 11 Si 1.027 2.973 12 H -0.285 1.285 13 H -0.370 1.370 14 H -0.249 1.249 15 N -0.682 5.682 16 C 0.031 3.969 17 C -0.164 4.164 18 C 0.065 3.935 19 O -0.388 6.388 20 H 0.066 0.934 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.079 0.921 24 H 0.063 0.937 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.338 0.662 29 H 0.067 0.933 30 H 0.041 0.959 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.717 -0.842 1.350 15.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C 0.032 3.968 4 H 0.079 0.921 5 C -0.175 4.175 6 C 0.121 3.879 7 C -0.551 4.551 8 H 0.043 0.957 9 C -0.175 4.175 10 N -0.593 5.593 11 Si 0.865 3.135 12 H -0.212 1.212 13 H -0.307 1.307 14 H -0.174 1.174 15 N -0.317 5.317 16 C -0.118 4.118 17 C -0.204 4.204 18 C -0.011 4.011 19 O -0.307 6.307 20 H 0.085 0.915 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.159 0.841 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -15.196 -1.090 1.028 15.269 hybrid contribution 0.436 0.489 -0.070 0.659 sum -14.760 -0.601 0.958 14.803 Atomic orbital electron populations 1.21668 0.93957 1.02184 1.02025 1.21572 0.97581 0.93527 1.02719 1.22287 0.93217 0.94841 0.86495 0.92081 1.22509 0.95332 0.98032 1.01607 1.18872 0.92801 0.90285 0.85952 1.20928 0.90319 1.51475 0.92342 0.95703 1.25954 0.95261 0.92501 1.03746 1.70134 1.10558 1.51798 1.26826 0.84365 0.75910 0.78384 0.74804 1.21227 1.30676 1.17445 1.59959 1.15147 1.12383 1.44254 1.22123 1.01388 0.88055 1.00199 1.22663 0.96786 1.01457 0.99479 1.22634 0.92885 0.82915 1.02697 1.87835 1.78317 1.25216 1.39335 0.91474 0.92702 0.92431 0.90231 0.91773 0.91851 0.93062 0.93201 0.84079 0.91394 0.94032 0.93354 0.93260 0.91487 0.92637 0.87402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 9.81 71.98 0.71 -2.34 16 2 C -0.12 -3.11 5.64 30.59 0.17 -2.94 16 3 C 0.09 2.83 2.38 30.63 0.07 2.90 16 4 H 0.06 1.83 6.67 -2.39 -0.02 1.82 16 5 C -0.14 -5.48 4.12 30.69 0.13 -5.35 16 6 C 0.21 9.11 0.26 2.90 0.00 9.11 16 7 C -0.51 -28.69 7.67 25.60 0.20 -28.49 16 8 H 0.02 1.57 8.05 -2.91 -0.02 1.55 16 9 C 0.02 1.35 4.68 84.66 0.40 1.75 16 10 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 11 Si 1.03 50.91 23.43 68.60 1.61 52.52 16 12 H -0.28 -13.47 6.57 99.48 0.65 -12.82 16 13 H -0.37 -19.65 7.11 99.48 0.71 -18.95 16 14 H -0.25 -11.17 5.09 99.48 0.51 -10.66 16 15 N -0.68 -26.75 2.36 -496.18 -1.17 -27.92 16 16 C 0.03 1.18 8.36 127.69 1.07 2.25 16 17 C -0.16 -6.17 4.57 30.68 0.14 -6.03 16 18 C 0.07 1.92 6.58 72.01 0.47 2.40 16 19 O -0.39 -12.37 9.94 -148.98 -1.48 -13.85 16 20 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 21 H 0.05 1.24 7.83 -2.38 -0.02 1.22 16 22 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 24 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.06 2.71 5.44 -2.39 -0.01 2.70 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 28 H 0.34 11.13 5.55 -89.70 -0.50 10.63 16 29 H 0.07 2.26 8.13 -2.39 -0.02 2.24 16 30 H 0.04 1.34 6.56 -2.38 -0.02 1.32 16 31 H 0.05 2.22 6.21 -2.39 -0.01 2.21 16 32 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.07 2.50 6.36 -2.39 -0.02 2.48 16 34 H 0.06 1.46 6.97 -2.39 -0.02 1.45 16 35 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 Total: -1.00 -66.38 255.61 2.92 -63.46 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: 0.31 Total: 13.11 kcal Atomic # 6 Polarization: -30.10 SS G_CDS: 3.35 Total: -26.75 kcal Atomic # 7 Polarization: -87.61 SS G_CDS: -0.87 Total: -88.48 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -1.48 Total: -13.85 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 1.61 Total: 52.52 kcal Total: -66.38 2.92 -63.46 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261139319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.816 kcal (2) G-P(sol) polarization free energy of solvation -66.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds