Wall clock time and date at job start Mon Mar 30 2020 02:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47189 * 2 1 4 4 C 1.52992 * 109.47344 * 120.00211 * 2 1 3 5 5 H 1.09006 * 109.47082 * 53.44278 * 4 2 1 6 6 C 1.50697 * 109.47357 * 173.43760 * 4 2 1 7 7 H 1.08006 * 119.99736 * 114.83657 * 6 4 2 8 8 C 1.37872 * 120.00239 * 294.56144 * 6 4 2 9 9 N 1.31520 * 120.00214 * 171.44845 * 8 6 4 10 10 Si 1.86802 * 120.00071 * 351.45321 * 8 6 4 11 11 H 1.48507 * 109.47086 * 95.04016 * 10 8 6 12 12 H 1.48501 * 109.47274 * 215.03753 * 10 8 6 13 13 H 1.48499 * 109.47081 * 335.04345 * 10 8 6 14 14 N 1.46904 * 109.47373 * 293.44279 * 4 2 1 15 15 C 1.47445 * 110.99950 * 76.54987 * 14 4 2 16 16 C 1.54317 * 107.22796 * 123.26085 * 15 14 4 17 17 C 1.55133 * 103.02373 * 22.28430 * 16 15 14 18 18 H 1.09004 * 110.98778 * 82.47159 * 17 16 15 19 19 O 1.42893 * 110.99356 * 206.25133 * 17 16 15 20 20 C 1.47836 * 111.00135 * 197.39814 * 14 4 2 21 21 H 1.08996 * 109.47425 * 308.63264 * 1 2 3 22 22 H 1.09006 * 109.46868 * 68.63248 * 1 2 3 23 23 H 1.08999 * 109.47046 * 188.62736 * 1 2 3 24 24 H 1.09007 * 109.47376 * 240.00363 * 2 1 3 25 25 H 1.09002 * 109.47324 * 185.05259 * 3 2 1 26 26 H 1.09005 * 109.47744 * 305.05582 * 3 2 1 27 27 H 1.09000 * 109.47230 * 65.05271 * 3 2 1 28 28 H 0.96999 * 120.00191 * 180.02562 * 9 8 6 29 29 H 1.08998 * 109.88843 * 242.66602 * 15 14 4 30 30 H 1.09004 * 109.88752 * 3.85672 * 15 14 4 31 31 H 1.09006 * 110.70419 * 140.67012 * 16 15 14 32 32 H 1.09003 * 110.70622 * 263.71902 * 16 15 14 33 33 H 0.96697 * 114.00508 * 298.54689 * 19 17 16 34 34 H 1.09004 * 110.37243 * 332.46172 * 20 14 4 35 35 H 1.08996 * 110.37637 * 94.80287 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2491 5 1 1.5840 -1.7095 1.3097 6 6 3.5382 -0.8634 1.1706 7 1 4.1673 -0.3512 1.8837 8 6 4.1056 -1.6518 0.1922 9 7 5.4089 -1.6449 0.0156 10 14 3.0232 -2.7298 -0.8830 11 1 2.7065 -2.0119 -2.1439 12 1 3.7392 -3.9919 -1.1985 13 1 1.7634 -3.0422 -0.1615 14 7 1.6838 0.0564 2.4434 15 6 0.2570 -0.1098 2.7761 16 6 0.1837 -0.6343 4.2255 17 6 1.5459 -0.1965 4.8250 18 1 1.5117 0.8420 5.1545 19 8 1.9341 -1.0582 5.8968 20 6 2.4909 -0.3629 3.6089 21 1 -0.3634 0.6416 0.8027 22 1 -0.3633 0.3745 -0.9571 23 1 -0.3633 -1.0160 0.1542 24 1 1.8934 -0.5138 -0.8901 25 1 3.1262 1.4438 -0.0905 26 1 1.6046 1.9819 -0.8412 27 1 1.7525 1.9295 0.9318 28 1 5.8080 -2.1993 -0.6730 29 1 -0.2551 0.8496 2.7025 30 1 -0.2005 -0.8298 2.0975 31 1 -0.6418 -0.1676 4.7630 32 1 0.0850 -1.7198 4.2380 33 1 1.3184 -1.0606 6.6424 34 1 2.7954 -1.4043 3.5047 35 1 3.3646 0.2799 3.7165 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261141989.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:28 Heat of formation + Delta-G solvation = -43.281498 kcal Electronic energy + Delta-G solvation = -15496.891231 eV Core-core repulsion = 13108.982817 eV Total energy + Delta-G solvation = -2387.908414 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.03323 -36.45214 -34.05234 -32.25169 -29.99717 -27.87177 -26.74236 -26.00627 -22.57813 -20.78139 -20.14521 -19.06297 -17.14493 -16.41217 -15.48754 -14.86547 -14.16733 -13.89566 -13.30754 -13.20664 -12.83877 -12.71042 -12.36653 -11.91186 -11.83247 -11.69222 -11.07091 -10.93575 -10.82707 -10.44408 -10.40049 -10.22702 -9.79039 -9.72965 -9.61523 -9.36206 -8.88469 -8.52156 -7.35791 -6.07308 -4.03961 3.26726 3.36662 3.38145 4.33587 4.40709 4.87174 5.08291 5.20489 5.28709 5.39997 5.69398 5.86472 5.91679 5.96931 6.01161 6.09088 6.19757 6.40244 6.45291 6.61057 6.62536 6.68448 6.70743 6.78918 6.97803 7.16348 7.26104 7.47492 7.58688 7.84955 7.96827 8.04943 8.62869 8.99736 9.55792 11.05133 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.028568 B = 0.012576 C = 0.010524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.893330 B = 2225.993864 C = 2659.999533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.090 4.090 3 C -0.118 4.118 4 C 0.185 3.815 5 H 0.003 0.997 6 C -0.509 4.509 7 H 0.083 0.917 8 C 0.076 3.924 9 N -0.895 5.895 10 Si 0.867 3.133 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.265 1.265 14 N -0.510 5.510 15 C 0.037 3.963 16 C -0.177 4.177 17 C 0.085 3.915 18 H 0.065 0.935 19 O -0.561 6.561 20 C 0.073 3.927 21 H 0.061 0.939 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.059 0.941 28 H 0.263 0.737 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.370 0.630 34 H 0.064 0.936 35 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.860 2.815 5.699 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.109 4.109 3 C -0.175 4.175 4 C 0.077 3.923 5 H 0.020 0.980 6 C -0.547 4.547 7 H 0.101 0.899 8 C -0.127 4.127 9 N -0.533 5.533 10 Si 0.696 3.304 11 H -0.202 1.202 12 H -0.218 1.218 13 H -0.189 1.189 14 N -0.235 5.235 15 C -0.091 4.091 16 C -0.215 4.215 17 C 0.025 3.975 18 H 0.083 0.917 19 O -0.365 6.365 20 C -0.055 4.055 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.074 0.926 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.216 0.784 34 H 0.082 0.918 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.087 3.135 5.059 11.712 hybrid contribution -1.209 -1.434 -0.269 1.894 sum -11.296 1.701 4.789 12.387 Atomic orbital electron populations 1.22236 0.98142 1.00298 1.00660 1.21359 0.92536 0.98035 0.98951 1.21480 1.01696 0.94839 0.99513 1.19983 0.96810 0.89527 0.85992 0.97952 1.21015 0.88932 1.29136 1.15605 0.89874 1.24868 0.94681 0.96536 0.96567 1.69910 1.10010 1.39882 1.33458 0.87023 0.81414 0.80562 0.81428 1.20231 1.21825 1.18949 1.63515 1.00789 1.55337 1.03853 1.23037 0.92608 0.99742 0.93707 1.23510 0.98139 1.01553 0.98331 1.23179 0.94120 0.92350 0.87848 0.91678 1.86543 1.52125 1.67871 1.29977 1.22668 0.95365 1.01516 0.85909 0.92030 0.94310 0.94083 0.92606 0.91989 0.95965 0.92174 0.92683 0.91415 0.92370 0.91665 0.91131 0.78388 0.91774 0.90231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 7.69 37.16 0.29 -2.50 16 2 C -0.09 -1.93 2.34 -90.63 -0.21 -2.15 16 3 C -0.12 -2.42 8.79 37.16 0.33 -2.09 16 4 C 0.18 4.30 0.88 -68.87 -0.06 4.24 16 5 H 0.00 0.08 6.05 -51.93 -0.31 -0.24 16 6 C -0.51 -13.92 7.14 -34.44 -0.25 -14.17 16 7 H 0.08 2.48 6.74 -52.48 -0.35 2.12 16 8 C 0.08 2.16 5.40 -17.82 -0.10 2.06 16 9 N -0.89 -27.06 13.96 55.43 0.77 -26.29 16 10 Si 0.87 21.66 25.06 -169.99 -4.26 17.40 16 11 H -0.28 -6.75 6.96 56.52 0.39 -6.36 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 13 H -0.26 -6.41 6.23 56.52 0.35 -6.06 16 14 N -0.51 -10.35 3.88 -224.68 -0.87 -11.22 16 15 C 0.04 0.62 4.88 -2.84 -0.01 0.61 16 16 C -0.18 -2.57 6.67 -24.91 -0.17 -2.74 16 17 C 0.08 1.35 4.42 -24.60 -0.11 1.24 16 18 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 19 O -0.56 -8.62 13.47 -35.23 -0.47 -9.09 16 20 C 0.07 1.48 5.02 -2.30 -0.01 1.47 16 21 H 0.06 1.01 5.50 -51.93 -0.29 0.72 16 22 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.04 0.72 7.40 -51.93 -0.38 0.34 16 24 H 0.06 1.31 4.78 -51.93 -0.25 1.06 16 25 H 0.06 1.42 7.59 -51.93 -0.39 1.03 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 1.19 7.26 -51.93 -0.38 0.81 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.07 1.03 7.42 -51.93 -0.39 0.65 16 30 H 0.06 1.00 5.29 -51.93 -0.27 0.73 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.37 3.70 9.11 45.56 0.42 4.11 16 34 H 0.06 1.48 7.33 -51.93 -0.38 1.10 16 35 H 0.08 1.68 7.66 -51.93 -0.40 1.29 16 LS Contribution 261.07 15.07 3.93 3.93 Total: -1.00 -30.14 261.07 -5.89 -36.03 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -4.69 Total: 3.26 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -0.30 Total: -14.03 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: -0.10 Total: -37.51 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: -0.47 Total: -9.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.26 Total: 17.40 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -30.14 -5.89 -36.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141989.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.251 kcal (2) G-P(sol) polarization free energy of solvation -30.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds