Wall clock time and date at job start Mon Mar 30 2020 02:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47281 * 2 1 4 4 C 1.53003 * 109.47083 * 120.00118 * 2 1 3 5 5 H 1.08995 * 109.47362 * 299.67329 * 4 2 1 6 6 C 1.50702 * 109.46709 * 59.67039 * 4 2 1 7 7 H 1.07996 * 119.99913 * 88.45874 * 6 4 2 8 8 C 1.37879 * 120.00202 * 268.44878 * 6 4 2 9 9 N 1.31519 * 119.99565 * 358.11862 * 8 6 4 10 10 Si 1.86792 * 120.00211 * 178.11448 * 8 6 4 11 11 H 1.48505 * 109.47170 * 90.00353 * 10 8 6 12 12 H 1.48504 * 109.47254 * 210.00309 * 10 8 6 13 13 H 1.48498 * 109.47320 * 330.00654 * 10 8 6 14 14 N 1.46902 * 109.47117 * 179.66839 * 4 2 1 15 15 C 1.47899 * 110.99636 * 81.18434 * 14 4 2 16 16 C 1.53994 * 107.05794 * 214.15514 * 15 14 4 17 17 C 1.54601 * 105.13886 * 1.22805 * 16 15 14 18 18 H 1.08999 * 110.72046 * 263.59953 * 17 16 15 19 19 O 1.42904 * 110.72570 * 140.49523 * 17 16 15 20 20 C 1.48533 * 110.99878 * 323.79087 * 14 4 2 21 21 H 1.09004 * 109.47499 * 175.58919 * 1 2 3 22 22 H 1.09001 * 109.47135 * 295.58699 * 1 2 3 23 23 H 1.09001 * 109.47423 * 55.59127 * 1 2 3 24 24 H 1.09003 * 109.47128 * 239.99727 * 2 1 3 25 25 H 1.09009 * 109.47093 * 67.03588 * 3 2 1 26 26 H 1.08994 * 109.47485 * 187.03384 * 3 2 1 27 27 H 1.08999 * 109.47121 * 307.04017 * 3 2 1 28 28 H 0.96998 * 119.99721 * 179.97438 * 9 8 6 29 29 H 1.08999 * 109.92070 * 333.50660 * 15 14 4 30 30 H 1.09000 * 109.91748 * 94.60490 * 15 14 4 31 31 H 1.08999 * 110.31214 * 120.13816 * 16 15 14 32 32 H 1.09000 * 110.31304 * 242.31356 * 16 15 14 33 33 H 0.96700 * 113.99659 * 61.45069 * 19 17 16 34 34 H 1.08998 * 110.66543 * 278.15217 * 20 14 4 35 35 H 1.09001 * 110.67173 * 41.28422 * 20 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 1.6815 -0.2042 2.1392 6 6 1.5309 -2.1397 1.2532 7 1 2.0975 -2.9181 0.7639 8 6 0.3420 -2.4438 1.8818 9 7 -0.3292 -1.5030 2.5095 10 14 -0.3154 -4.1917 1.8416 11 1 0.2077 -4.9443 3.0101 12 1 -1.7992 -4.1639 1.8947 13 1 0.1227 -4.8567 0.5882 14 7 3.5090 -0.7282 1.2453 15 6 4.0464 0.5577 1.7403 16 6 5.3448 0.8349 0.9602 17 6 5.4875 -0.3513 -0.0210 18 1 6.1474 -1.1150 0.3906 19 8 5.9662 0.0973 -1.2905 20 6 4.0368 -0.8834 -0.1344 21 1 -0.3634 -1.0246 -0.0790 22 1 -0.3633 0.4438 0.9269 23 1 -0.3634 0.5807 -0.8478 24 1 1.8933 -0.5139 -0.8900 25 1 1.7831 1.9187 0.9463 26 1 3.1227 1.4451 -0.1258 27 1 1.5775 1.9914 -0.8203 28 1 -1.1658 -1.7168 2.9514 29 1 3.3264 1.3556 1.5586 30 1 4.2588 0.4853 2.8070 31 1 5.2631 1.7727 0.4106 32 1 6.1956 0.8673 1.6408 33 1 6.8406 0.5089 -1.2581 34 1 4.0338 -1.9320 -0.4318 35 1 3.4601 -0.2816 -0.8369 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261141993.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:31 Heat of formation + Delta-G solvation = -56.319015 kcal Electronic energy + Delta-G solvation = -15529.736670 eV Core-core repulsion = 13141.262907 eV Total energy + Delta-G solvation = -2388.473763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.83632 -37.72865 -35.44019 -33.92397 -31.36420 -29.40075 -28.46377 -27.26154 -24.49879 -22.37597 -21.74207 -20.26874 -18.44870 -18.13299 -16.97050 -16.56604 -16.19176 -15.40748 -15.08598 -14.47945 -14.26142 -13.89661 -13.76829 -13.31590 -13.01199 -12.90094 -12.73090 -12.55523 -12.37899 -12.17317 -11.94347 -11.82292 -11.73020 -11.27964 -11.08795 -10.84796 -10.80814 -10.41739 -8.77641 -8.04833 -6.11333 1.41338 1.43265 1.52167 2.45808 3.07037 3.31920 3.65706 3.83395 4.05164 4.19461 4.26549 4.39040 4.43795 4.50594 4.80412 4.82690 4.83999 4.94149 5.06198 5.07888 5.11331 5.16316 5.18583 5.28757 5.35562 5.51049 5.72213 5.76943 5.88860 6.19225 6.53446 6.71960 6.96118 6.99607 7.53134 9.01313 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.037567 B = 0.010224 C = 0.009307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.147058 B = 2738.028552 C = 3007.889023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.113 4.113 3 C -0.146 4.146 4 C 0.209 3.791 5 H 0.030 0.970 6 C -0.505 4.505 7 H 0.041 0.959 8 C 0.025 3.975 9 N -0.912 5.912 10 Si 0.944 3.056 11 H -0.280 1.280 12 H -0.283 1.283 13 H -0.273 1.273 14 N -0.522 5.522 15 C 0.010 3.990 16 C -0.147 4.147 17 C 0.105 3.895 18 H 0.072 0.928 19 O -0.576 6.576 20 C 0.034 3.966 21 H 0.034 0.966 22 H 0.040 0.960 23 H 0.037 0.963 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.259 0.741 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.396 0.604 34 H 0.057 0.943 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.319 5.618 -4.274 11.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.134 4.134 3 C -0.203 4.203 4 C 0.102 3.898 5 H 0.048 0.952 6 C -0.544 4.544 7 H 0.060 0.940 8 C -0.175 4.175 9 N -0.551 5.551 10 Si 0.771 3.229 11 H -0.206 1.206 12 H -0.209 1.209 13 H -0.198 1.198 14 N -0.246 5.246 15 C -0.118 4.118 16 C -0.185 4.185 17 C 0.045 3.955 18 H 0.090 0.910 19 O -0.384 6.384 20 C -0.094 4.094 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.110 0.890 33 H 0.246 0.754 34 H 0.076 0.924 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.752 4.978 -4.015 10.839 hybrid contribution -0.541 -0.247 0.029 0.595 sum 8.211 4.730 -3.986 10.280 Atomic orbital electron populations 1.21376 0.95523 1.00124 0.99010 1.21757 0.96404 0.95115 1.00115 1.22192 1.01044 0.96385 1.00645 1.19418 0.82340 0.94908 0.93130 0.95212 1.21157 1.04996 0.94372 1.33855 0.94038 1.25479 0.97274 0.99934 0.94783 1.70047 1.15939 1.33539 1.35612 0.85779 0.77353 0.81506 0.78295 1.20609 1.20892 1.19777 1.65080 1.10646 1.30757 1.18137 1.23254 0.96516 0.92460 0.99521 1.23036 0.97958 0.98906 0.98638 1.22607 0.94561 0.95079 0.83205 0.90990 1.86457 1.40184 1.81505 1.30265 1.23193 0.93969 1.00215 0.92032 0.94701 0.94121 0.94394 0.93155 0.93574 0.91673 0.92694 0.93183 0.92379 0.92043 0.89848 0.89007 0.75398 0.92431 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -4.72 7.84 71.98 0.56 -4.15 16 2 C -0.11 -5.03 1.91 -10.79 -0.02 -5.05 16 3 C -0.15 -5.35 7.16 71.98 0.52 -4.83 16 4 C 0.21 10.43 1.65 44.17 0.07 10.50 16 5 H 0.03 1.69 7.15 -2.39 -0.02 1.67 16 6 C -0.50 -27.99 7.87 25.60 0.20 -27.78 16 7 H 0.04 2.36 7.81 -2.91 -0.02 2.33 16 8 C 0.02 1.36 4.22 84.65 0.36 1.72 16 9 N -0.91 -51.80 11.18 21.45 0.24 -51.56 16 10 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 11 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 14 N -0.52 -22.61 5.15 -862.24 -4.44 -27.05 16 15 C 0.01 0.37 5.69 86.45 0.49 0.86 16 16 C -0.15 -3.90 6.14 31.48 0.19 -3.71 16 17 C 0.11 3.09 4.43 31.80 0.14 3.23 16 18 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 19 O -0.58 -15.00 13.41 -148.98 -2.00 -16.99 16 20 C 0.03 1.32 5.16 86.65 0.45 1.76 16 21 H 0.03 1.75 6.52 -2.39 -0.02 1.73 16 22 H 0.04 2.00 7.47 -2.39 -0.02 1.98 16 23 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.05 2.28 6.07 -2.39 -0.01 2.26 16 25 H 0.05 1.72 7.22 -2.38 -0.02 1.70 16 26 H 0.06 2.23 4.10 -2.39 -0.01 2.22 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 29 H 0.06 2.09 4.11 -2.39 -0.01 2.08 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.08 1.99 7.79 -2.39 -0.02 1.97 16 32 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.40 5.94 9.11 -74.06 -0.67 5.27 16 34 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 35 H 0.06 2.36 4.14 -2.39 -0.01 2.35 16 Total: -1.00 -61.73 261.35 -0.80 -62.53 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.41 Total: 14.16 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 2.96 Total: -27.46 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -4.20 Total: -78.61 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: -2.00 Total: -16.99 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -61.73 -0.80 -62.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261141993.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.212 kcal (2) G-P(sol) polarization free energy of solvation -61.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds