Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46887 * 2 1 4 4 C 1.53000 * 109.47081 * 120.00240 * 2 1 3 5 5 N 1.46892 * 109.47284 * 64.99742 * 4 2 1 6 6 C 1.46905 * 111.00189 * 184.45912 * 5 4 2 7 7 C 1.50699 * 110.43427 * 59.14949 * 6 5 4 8 8 H 1.07999 * 120.00069 * 240.72842 * 7 6 5 9 9 C 1.37877 * 120.00351 * 60.72277 * 7 6 5 10 10 N 1.31517 * 119.99714 * 353.42412 * 9 7 6 11 11 Si 1.86794 * 120.00333 * 173.41850 * 9 7 6 12 12 H 1.48502 * 109.46922 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47331 * 240.00754 * 11 9 7 14 14 H 1.48499 * 109.47274 * 120.00560 * 11 9 7 15 15 C 1.54808 * 110.60487 * 181.77146 * 6 5 4 16 16 C 1.54990 * 102.09278 * 97.85039 * 15 6 5 17 17 O 1.44383 * 103.49311 * 37.02601 * 16 15 6 18 18 C 1.43745 * 106.97165 * 319.93795 * 17 16 15 19 19 H 1.09006 * 109.46878 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47148 * 299.99725 * 1 2 3 21 21 H 1.09000 * 109.47115 * 60.00166 * 1 2 3 22 22 H 1.09003 * 109.46606 * 239.99861 * 2 1 3 23 23 H 1.09005 * 109.46486 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47108 * 299.99839 * 3 2 1 25 25 H 1.08995 * 109.47514 * 60.00203 * 3 2 1 26 26 H 1.09004 * 109.46838 * 304.99516 * 4 2 1 27 27 H 1.09000 * 109.46955 * 184.99918 * 4 2 1 28 28 H 1.00899 * 111.00048 * 60.50912 * 5 4 2 29 29 H 0.97002 * 120.00053 * 4.67752 * 10 9 7 30 30 H 1.08999 * 110.91132 * 216.05148 * 15 6 5 31 31 H 1.09001 * 110.90713 * 339.65274 * 15 6 5 32 32 H 1.09004 * 110.62264 * 278.52691 * 16 15 6 33 33 H 1.08997 * 110.62225 * 155.52706 * 16 15 6 34 34 H 1.08999 * 109.88592 * 267.08725 * 18 17 16 35 35 H 1.09007 * 110.00438 * 146.00385 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 -2.1367 1.1904 6 6 2.0323 -2.8389 2.4232 7 6 1.3711 -2.2011 3.6178 8 1 1.9747 -1.7784 4.4074 9 6 -0.0043 -2.1570 3.7027 10 7 -0.7389 -2.5530 2.6862 11 14 -0.8244 -1.5349 5.2614 12 1 0.2162 -1.1520 6.2493 13 1 -1.6792 -2.6065 5.8326 14 1 -1.6622 -0.3512 4.9415 15 6 1.6586 -4.3386 2.3336 16 6 3.0046 -4.9842 1.9170 17 8 3.9867 -4.2137 2.6425 18 6 3.5641 -2.8408 2.5915 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6054 -0.2617 2.1370 27 1 3.1263 -0.6444 1.2951 28 1 2.0490 -2.5874 0.3800 29 1 -0.3158 -2.9393 1.9035 30 1 1.3293 -4.7160 3.3017 31 1 0.8957 -4.5045 1.5730 32 1 3.1597 -4.8890 0.8422 33 1 3.0382 -6.0309 2.2193 34 1 4.0308 -2.3404 1.7430 35 1 3.8359 -2.3323 3.5167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = -59.019137 kcal Electronic energy + Delta-G solvation = -15503.287608 eV Core-core repulsion = 13114.696759 eV Total energy + Delta-G solvation = -2388.590850 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.92969 -36.17501 -33.88956 -31.40892 -29.50614 -27.67051 -26.49291 -24.36646 -23.82638 -21.70301 -19.59383 -19.28217 -16.87191 -15.56855 -15.08532 -14.71462 -14.26257 -13.81967 -13.69394 -13.37896 -12.82399 -12.26706 -12.08431 -11.81628 -11.60809 -11.36286 -10.91918 -10.71027 -10.57726 -10.44144 -10.37558 -10.22894 -10.07387 -9.89997 -9.63949 -8.90842 -8.52610 -8.25985 -7.23636 -6.12804 -3.96970 3.47608 3.49432 3.63276 4.57672 4.74756 5.14259 5.44365 5.49832 5.56310 5.74242 5.83030 5.87312 5.98993 6.04348 6.12426 6.21865 6.26424 6.28963 6.40279 6.50758 6.60912 6.66133 6.73350 6.77605 6.90293 7.11154 7.18444 7.22871 7.64774 7.93190 8.30951 8.55147 8.71186 9.09544 9.83487 11.24897 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.016642 C = 0.010390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.852286 B = 1682.115716 C = 2694.208974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C -0.143 4.143 4 C 0.080 3.920 5 N -0.662 5.662 6 C 0.205 3.795 7 C -0.601 4.601 8 H 0.047 0.953 9 C 0.042 3.958 10 N -0.887 5.887 11 Si 1.061 2.939 12 H -0.292 1.292 13 H -0.289 1.289 14 H -0.290 1.290 15 C -0.133 4.133 16 C 0.039 3.961 17 O -0.391 6.391 18 C 0.027 3.973 19 H 0.072 0.928 20 H 0.050 0.950 21 H 0.030 0.970 22 H 0.053 0.947 23 H 0.046 0.954 24 H 0.047 0.953 25 H 0.054 0.946 26 H 0.086 0.914 27 H 0.005 0.995 28 H 0.300 0.700 29 H 0.295 0.705 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.043 0.957 33 H 0.077 0.923 34 H 0.031 0.969 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.727 2.012 -4.269 6.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.112 4.112 3 C -0.201 4.201 4 C -0.049 4.049 5 N -0.291 5.291 6 C 0.116 3.884 7 C -0.639 4.639 8 H 0.065 0.935 9 C -0.169 4.169 10 N -0.522 5.522 11 Si 0.891 3.109 12 H -0.219 1.219 13 H -0.216 1.216 14 H -0.216 1.216 15 C -0.172 4.172 16 C -0.038 4.038 17 O -0.310 6.310 18 C -0.052 4.052 19 H 0.091 0.909 20 H 0.069 0.931 21 H 0.049 0.951 22 H 0.072 0.928 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.105 0.895 27 H 0.023 0.977 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 1.788 2.388 -3.298 4.447 hybrid contribution 2.356 -0.271 -0.912 2.541 sum 4.144 2.118 -4.209 6.275 Atomic orbital electron populations 1.21618 0.94338 1.03063 0.99535 1.21113 0.97045 0.94809 0.98198 1.21801 1.00131 0.96951 1.01233 1.21736 0.95170 0.89970 0.98011 1.60883 1.62884 1.01606 1.03690 1.19994 0.87722 0.90909 0.89752 1.21592 0.93817 1.44857 1.03678 0.93518 1.25447 0.94019 0.95539 1.01881 1.70491 1.40094 1.35270 1.06334 0.83671 0.75374 0.76529 0.75312 1.21852 1.21567 1.21616 1.23225 0.95137 0.97054 1.01751 1.23583 0.89602 0.95730 0.94836 1.88730 1.47750 1.19162 1.75399 1.24111 0.98750 0.82343 0.99981 0.90941 0.93098 0.95069 0.92832 0.93516 0.93372 0.92716 0.89534 0.97733 0.88390 0.89086 0.90654 0.91213 0.93875 0.90516 0.95091 0.90599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.08 37.16 0.34 -2.03 16 2 C -0.09 -1.60 3.10 -90.62 -0.28 -1.88 16 3 C -0.14 -2.12 9.19 37.16 0.34 -1.77 16 4 C 0.08 1.63 4.49 -3.83 -0.02 1.61 16 5 N -0.66 -14.26 3.91 -99.58 -0.39 -14.65 16 6 C 0.21 4.79 0.36 -131.22 -0.05 4.74 16 7 C -0.60 -15.89 6.51 -34.44 -0.22 -16.11 16 8 H 0.05 1.28 7.37 -52.49 -0.39 0.90 16 9 C 0.04 1.13 5.24 -17.82 -0.09 1.03 16 10 N -0.89 -24.76 13.32 55.43 0.74 -24.02 16 11 Si 1.06 24.67 29.91 -169.99 -5.08 19.59 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 15 C -0.13 -2.95 5.34 -24.73 -0.13 -3.08 16 16 C 0.04 0.76 7.72 38.21 0.29 1.05 16 17 O -0.39 -8.61 11.52 -35.23 -0.41 -9.02 16 18 C 0.03 0.59 6.55 37.73 0.25 0.84 16 19 H 0.07 1.51 7.75 -51.93 -0.40 1.11 16 20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.09 2.02 6.96 -51.93 -0.36 1.66 16 27 H 0.00 0.09 6.73 -51.93 -0.35 -0.26 16 28 H 0.30 6.00 8.77 -39.29 -0.34 5.65 16 29 H 0.29 8.09 4.92 -40.82 -0.20 7.89 16 30 H 0.07 1.82 7.86 -51.93 -0.41 1.41 16 31 H 0.07 1.55 7.19 -51.93 -0.37 1.18 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.03 0.65 6.71 -51.93 -0.35 0.30 16 35 H 0.08 1.74 7.41 -51.93 -0.38 1.36 16 LS Contribution 274.37 15.07 4.13 4.13 Total: -1.00 -27.65 274.37 -6.32 -33.96 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.74 Total: 5.61 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 0.43 Total: -15.60 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.35 Total: -38.67 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.41 Total: -9.02 kcal Atomic # 14 Polarization: 24.67 SS G_CDS: -5.08 Total: 19.59 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.65 -6.32 -33.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.056 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds