Wall clock time and date at job start Mon Mar 30 2020 02:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46887 * 2 1 4 4 C 1.53000 * 109.47081 * 120.00240 * 2 1 3 5 5 N 1.46892 * 109.47284 * 64.99742 * 4 2 1 6 6 C 1.46905 * 111.00189 * 184.45912 * 5 4 2 7 7 C 1.50699 * 110.43427 * 59.14949 * 6 5 4 8 8 H 1.07999 * 120.00069 * 240.72842 * 7 6 5 9 9 C 1.37877 * 120.00351 * 60.72277 * 7 6 5 10 10 N 1.31517 * 119.99714 * 353.42412 * 9 7 6 11 11 Si 1.86794 * 120.00333 * 173.41850 * 9 7 6 12 12 H 1.48502 * 109.46922 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47331 * 240.00754 * 11 9 7 14 14 H 1.48499 * 109.47274 * 120.00560 * 11 9 7 15 15 C 1.54808 * 110.60487 * 181.77146 * 6 5 4 16 16 C 1.54990 * 102.09278 * 97.85039 * 15 6 5 17 17 O 1.44383 * 103.49311 * 37.02601 * 16 15 6 18 18 C 1.43745 * 106.97165 * 319.93795 * 17 16 15 19 19 H 1.09006 * 109.46878 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47148 * 299.99725 * 1 2 3 21 21 H 1.09000 * 109.47115 * 60.00166 * 1 2 3 22 22 H 1.09003 * 109.46606 * 239.99861 * 2 1 3 23 23 H 1.09005 * 109.46486 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47108 * 299.99839 * 3 2 1 25 25 H 1.08995 * 109.47514 * 60.00203 * 3 2 1 26 26 H 1.09004 * 109.46838 * 304.99516 * 4 2 1 27 27 H 1.09000 * 109.46955 * 184.99918 * 4 2 1 28 28 H 1.00899 * 111.00048 * 60.50912 * 5 4 2 29 29 H 0.97002 * 120.00053 * 4.67752 * 10 9 7 30 30 H 1.08999 * 110.91132 * 216.05148 * 15 6 5 31 31 H 1.09001 * 110.90713 * 339.65274 * 15 6 5 32 32 H 1.09004 * 110.62264 * 278.52691 * 16 15 6 33 33 H 1.08997 * 110.62225 * 155.52706 * 16 15 6 34 34 H 1.08999 * 109.88592 * 267.08725 * 18 17 16 35 35 H 1.09007 * 110.00438 * 146.00385 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6514 -2.1367 1.1904 6 6 2.0323 -2.8389 2.4232 7 6 1.3711 -2.2011 3.6178 8 1 1.9747 -1.7784 4.4074 9 6 -0.0043 -2.1570 3.7027 10 7 -0.7389 -2.5530 2.6862 11 14 -0.8244 -1.5349 5.2614 12 1 0.2162 -1.1520 6.2493 13 1 -1.6792 -2.6065 5.8326 14 1 -1.6622 -0.3512 4.9415 15 6 1.6586 -4.3386 2.3336 16 6 3.0046 -4.9842 1.9170 17 8 3.9867 -4.2137 2.6425 18 6 3.5641 -2.8408 2.5915 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 3.1300 1.4424 -0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6767 1.9563 0.8899 26 1 1.6054 -0.2617 2.1370 27 1 3.1263 -0.6444 1.2951 28 1 2.0490 -2.5874 0.3800 29 1 -0.3158 -2.9393 1.9035 30 1 1.3293 -4.7160 3.3017 31 1 0.8957 -4.5045 1.5730 32 1 3.1597 -4.8890 0.8422 33 1 3.0382 -6.0309 2.2193 34 1 4.0308 -2.3404 1.7430 35 1 3.8359 -2.3323 3.5167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:27 Heat of formation + Delta-G solvation = -76.520213 kcal Electronic energy + Delta-G solvation = -15504.046512 eV Core-core repulsion = 13114.696759 eV Total energy + Delta-G solvation = -2389.349753 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.67810 -37.74479 -35.62793 -33.29201 -31.22192 -29.41047 -27.87289 -26.31663 -25.49823 -23.37021 -21.42119 -20.81117 -18.80784 -17.28067 -16.82991 -16.35215 -15.80154 -15.58006 -15.44171 -14.98190 -14.46989 -14.05719 -13.64272 -13.45561 -13.12681 -12.97779 -12.70684 -12.50212 -12.28104 -12.13496 -11.98916 -11.90074 -11.72533 -11.49723 -11.21196 -10.62592 -10.48249 -10.30352 -9.00084 -8.20553 -6.08296 1.56101 1.62196 1.77868 2.64126 3.06447 3.35583 3.63851 4.04377 4.09959 4.16403 4.22157 4.29646 4.35147 4.46204 4.59481 4.72084 4.81772 4.87569 4.88600 4.93027 5.08675 5.10723 5.17584 5.17907 5.29153 5.39031 5.58139 5.66533 5.94092 6.01099 6.34615 6.63241 6.88970 7.11027 7.76513 9.14341 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.018346 B = 0.016642 C = 0.010390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.852286 B = 1682.115716 C = 2694.208974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.087 4.087 3 C -0.138 4.138 4 C 0.086 3.914 5 N -0.666 5.666 6 C 0.198 3.802 7 C -0.610 4.610 8 H 0.026 0.974 9 C 0.005 3.995 10 N -0.908 5.908 11 Si 1.097 2.903 12 H -0.285 1.285 13 H -0.284 1.284 14 H -0.286 1.286 15 C -0.129 4.129 16 C 0.046 3.954 17 O -0.403 6.403 18 C 0.034 3.966 19 H 0.043 0.957 20 H 0.027 0.973 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.058 0.942 24 H 0.070 0.930 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.011 0.989 28 H 0.313 0.687 29 H 0.291 0.709 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 2.203 -5.489 7.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.106 4.106 3 C -0.196 4.196 4 C -0.043 4.043 5 N -0.296 5.296 6 C 0.108 3.892 7 C -0.649 4.649 8 H 0.045 0.955 9 C -0.201 4.201 10 N -0.544 5.544 11 Si 0.923 3.077 12 H -0.211 1.211 13 H -0.210 1.210 14 H -0.213 1.213 15 C -0.168 4.168 16 C -0.030 4.030 17 O -0.323 6.323 18 C -0.045 4.045 19 H 0.062 0.938 20 H 0.046 0.954 21 H 0.077 0.923 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.029 0.971 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.065 0.935 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.493 2.576 -4.526 5.773 hybrid contribution 2.169 -0.344 -0.542 2.262 sum 4.662 2.232 -5.068 7.239 Atomic orbital electron populations 1.21518 0.95320 1.01203 0.99726 1.21081 0.96050 0.96361 0.97063 1.21753 1.00883 0.95007 1.01945 1.21665 0.95251 0.89280 0.98101 1.60711 1.63280 1.02219 1.03371 1.19957 0.88335 0.91365 0.89522 1.21782 0.93964 1.44649 1.04485 0.95522 1.26384 0.94862 0.95461 1.03424 1.70565 1.40229 1.36772 1.06790 0.83177 0.74974 0.76347 0.73185 1.21113 1.21014 1.21253 1.23058 0.96810 0.96659 1.00279 1.23706 0.86848 0.96402 0.96061 1.88713 1.48356 1.19050 1.76133 1.23951 0.97948 0.82778 0.99784 0.93774 0.95420 0.92261 0.91175 0.92312 0.91106 0.93591 0.93310 0.97105 0.86963 0.89571 0.93355 0.91564 0.91341 0.87926 0.93528 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 9.08 71.98 0.65 -3.67 16 2 C -0.09 -2.83 3.10 -10.79 -0.03 -2.87 16 3 C -0.14 -3.72 9.19 71.98 0.66 -3.06 16 4 C 0.09 3.45 4.49 86.30 0.39 3.83 16 5 N -0.67 -28.34 3.91 -468.97 -1.83 -30.17 16 6 C 0.20 9.21 0.36 3.77 0.00 9.21 16 7 C -0.61 -32.89 6.51 25.60 0.17 -32.72 16 8 H 0.03 1.50 7.37 -2.91 -0.02 1.48 16 9 C 0.01 0.29 5.24 84.65 0.44 0.74 16 10 N -0.91 -51.32 13.32 21.45 0.29 -51.04 16 11 Si 1.10 50.38 29.91 68.60 2.05 52.43 16 12 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 15 C -0.13 -5.68 5.34 31.89 0.17 -5.51 16 16 C 0.05 1.67 7.72 72.66 0.56 2.23 16 17 O -0.40 -17.04 11.52 -148.98 -1.72 -18.76 16 18 C 0.03 1.48 6.55 72.36 0.47 1.96 16 19 H 0.04 1.82 7.75 -2.38 -0.02 1.80 16 20 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 24 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.05 2.32 6.96 -2.39 -0.02 2.30 16 27 H 0.01 0.42 6.73 -2.39 -0.02 0.40 16 28 H 0.31 11.99 8.77 -89.69 -0.79 11.20 16 29 H 0.29 16.16 4.92 -92.71 -0.46 15.70 16 30 H 0.05 2.35 7.86 -2.39 -0.02 2.33 16 31 H 0.07 2.93 7.19 -2.39 -0.02 2.91 16 32 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.05 1.87 6.71 -2.39 -0.02 1.85 16 35 H 0.06 2.75 7.41 -2.38 -0.02 2.73 16 Total: -1.00 -59.19 274.37 2.86 -56.33 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: 0.58 Total: 21.06 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 3.49 Total: -29.86 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -1.55 Total: -81.21 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -1.72 Total: -18.76 kcal Atomic # 14 Polarization: 50.38 SS G_CDS: 2.05 Total: 52.43 kcal Total: -59.19 2.86 -56.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.188 kcal (2) G-P(sol) polarization free energy of solvation -59.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds