Wall clock time and date at job start Mon Mar 30 2020 02:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 C 1.53002 * 109.46852 * 120.00153 * 2 1 3 5 5 N 1.46498 * 109.46971 * 175.80316 * 4 2 1 6 6 C 1.36939 * 120.00126 * 95.16896 * 5 4 2 7 7 H 1.08003 * 120.00237 * 222.18056 * 6 5 4 8 8 C 1.38813 * 120.00080 * 42.17323 * 6 5 4 9 9 N 1.31618 * 119.99792 * 23.02016 * 8 6 5 10 10 Si 1.86793 * 120.00080 * 203.02036 * 8 6 5 11 11 H 1.48501 * 109.46977 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47445 * 299.99822 * 10 8 6 13 13 H 1.48503 * 109.47400 * 59.99995 * 10 8 6 14 14 C 1.46501 * 120.00036 * 275.16585 * 5 4 2 15 15 H 1.08994 * 110.43707 * 359.30449 * 14 5 4 16 16 C 1.54815 * 110.48566 * 121.84808 * 14 5 4 17 17 C 1.55342 * 101.93652 * 97.82315 * 16 14 5 18 18 O 1.44383 * 103.50121 * 37.05207 * 17 16 14 19 19 C 1.43744 * 106.97398 * 319.90944 * 18 17 16 20 20 H 1.08998 * 109.46730 * 300.00052 * 1 2 3 21 21 H 1.08997 * 109.47137 * 59.99541 * 1 2 3 22 22 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46743 * 239.99196 * 2 1 3 24 24 H 1.09006 * 109.47082 * 306.07824 * 3 2 1 25 25 H 1.09001 * 109.47018 * 66.07820 * 3 2 1 26 26 H 1.09003 * 109.47001 * 186.07996 * 3 2 1 27 27 H 1.09000 * 109.47180 * 55.80513 * 4 2 1 28 28 H 1.09001 * 109.47047 * 295.80251 * 4 2 1 29 29 H 0.97004 * 119.99946 * 1.80975 * 9 8 6 30 30 H 1.09003 * 110.90470 * 215.99631 * 16 14 5 31 31 H 1.09004 * 110.90792 * 339.59374 * 16 14 5 32 32 H 1.08998 * 110.63726 * 278.53489 * 17 16 14 33 33 H 1.08996 * 110.58647 * 155.54287 * 17 16 14 34 34 H 1.09002 * 109.88024 * 267.09111 * 19 18 17 35 35 H 1.09001 * 109.88124 * 145.93893 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5015 -0.8095 1.1998 6 6 4.2661 0.1327 1.8345 7 1 5.1461 0.5297 1.3502 8 6 3.9103 0.5775 3.1004 9 7 3.1563 -0.1742 3.8742 10 14 4.5014 2.2429 3.7055 11 1 3.9873 2.4818 5.0781 12 1 5.9862 2.2653 3.7218 13 1 4.0003 3.3059 2.7977 14 6 4.1450 -1.9056 0.4714 15 1 3.3946 -2.5675 0.0390 16 6 5.0771 -1.3491 -0.6324 17 6 6.4657 -1.4045 0.0617 18 8 6.4061 -2.6202 0.8382 19 6 5.0864 -2.6931 1.4032 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5140 -0.8900 24 1 1.5907 1.9867 -0.8306 25 1 1.7684 1.9239 0.9394 26 1 3.1247 1.4443 -0.1088 27 1 1.6166 -1.7250 1.2876 28 1 1.7393 -0.1659 2.1377 29 1 2.8711 -1.0502 3.5703 30 1 5.0572 -1.9867 -1.5162 31 1 4.8085 -0.3240 -0.8879 32 1 6.6051 -0.5405 0.7114 33 1 7.2627 -1.4612 -0.6796 34 1 5.0834 -2.2457 2.3971 35 1 4.7652 -3.7331 1.4617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261169082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:33 Heat of formation + Delta-G solvation = -42.874096 kcal Electronic energy + Delta-G solvation = -15598.072082 eV Core-core repulsion = 13210.181334 eV Total energy + Delta-G solvation = -2387.890748 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.74369 -36.34532 -33.48136 -31.59997 -29.33246 -27.69833 -26.42877 -25.48503 -22.68343 -21.79380 -20.01126 -19.12765 -17.00568 -15.82752 -15.38839 -14.47662 -14.18997 -13.76010 -13.62098 -13.52613 -12.83117 -12.45358 -11.96336 -11.88420 -11.60033 -11.10262 -10.80713 -10.79527 -10.59885 -10.43698 -10.26551 -10.18569 -10.07365 -9.93248 -9.76240 -9.31214 -8.79148 -8.33124 -6.73735 -6.04450 -3.42986 3.46727 3.48844 3.66333 4.52101 4.75914 5.16321 5.36150 5.53687 5.64863 5.66931 5.75700 5.87972 5.96641 6.11505 6.19489 6.21956 6.35239 6.39786 6.44887 6.50203 6.54071 6.63781 6.78804 6.82319 6.89921 6.92123 6.97941 7.27569 7.32862 7.62353 8.17395 8.60426 9.13495 9.80811 10.29509 11.15675 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.019793 B = 0.016530 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.337706 B = 1693.530186 C = 2520.517065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.124 4.124 4 C 0.148 3.852 5 N -0.582 5.582 6 C -0.347 4.347 7 H 0.050 0.950 8 C -0.011 4.011 9 N -0.905 5.905 10 Si 1.059 2.941 11 H -0.286 1.286 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.143 3.857 15 H 0.058 0.942 16 C -0.163 4.163 17 C 0.054 3.946 18 O -0.394 6.394 19 C 0.038 3.962 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.025 0.975 25 H 0.047 0.953 26 H 0.066 0.934 27 H 0.022 0.978 28 H 0.076 0.924 29 H 0.270 0.730 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -0.404 -7.209 7.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 C -0.182 4.182 4 C 0.022 3.978 5 N -0.303 5.303 6 C -0.476 4.476 7 H 0.067 0.933 8 C -0.215 4.215 9 N -0.543 5.543 10 Si 0.889 3.111 11 H -0.212 1.212 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.035 3.965 15 H 0.076 0.924 16 C -0.203 4.203 17 C -0.022 4.022 18 O -0.313 6.313 19 C -0.041 4.041 20 H 0.070 0.930 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.041 0.959 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.891 0.513 -5.857 5.947 hybrid contribution -0.091 -0.930 -1.387 1.673 sum -0.982 -0.418 -7.244 7.323 Atomic orbital electron populations 1.21804 0.97031 1.00490 1.00758 1.21677 0.93474 0.97726 1.00412 1.21596 1.02045 0.95080 0.99433 1.21035 0.83953 0.96438 0.96374 1.43941 1.00495 1.25731 1.60110 1.19620 1.11299 1.17749 0.98922 0.93293 1.25957 0.99449 1.04245 0.91894 1.70795 1.36923 1.10975 1.35582 0.83597 0.75736 0.75642 0.76120 1.21154 1.21857 1.21780 1.21723 0.93675 0.89684 0.91421 0.92375 1.23499 0.96725 1.01964 0.98083 1.23516 0.96675 0.88493 0.93546 1.88687 1.32676 1.41828 1.68158 1.23732 0.82187 0.98806 0.99350 0.93037 0.93877 0.93680 0.93120 0.95603 0.93354 0.91500 0.95915 0.90612 0.91928 0.92603 0.90236 0.91433 0.91218 0.90661 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.19 37.16 0.34 -1.95 16 2 C -0.11 -2.10 3.13 -90.62 -0.28 -2.38 16 3 C -0.12 -2.40 8.60 37.15 0.32 -2.08 16 4 C 0.15 3.22 4.10 -4.04 -0.02 3.20 16 5 N -0.58 -13.31 1.86 -163.92 -0.31 -13.61 16 6 C -0.35 -8.77 6.02 -15.06 -0.09 -8.86 16 7 H 0.05 1.28 6.01 -52.48 -0.32 0.97 16 8 C -0.01 -0.29 4.81 -17.43 -0.08 -0.38 16 9 N -0.90 -25.74 12.52 55.49 0.69 -25.05 16 10 Si 1.06 24.51 29.98 -169.99 -5.10 19.41 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 14 C 0.14 2.95 3.63 -66.40 -0.24 2.71 16 15 H 0.06 1.13 7.92 -51.93 -0.41 0.72 16 16 C -0.16 -3.04 6.34 -24.53 -0.16 -3.20 16 17 C 0.05 1.04 7.38 38.40 0.28 1.32 16 18 O -0.39 -8.42 11.52 -35.23 -0.41 -8.82 16 19 C 0.04 0.80 7.19 37.73 0.27 1.08 16 20 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 26 H 0.07 1.41 7.02 -51.93 -0.36 1.04 16 27 H 0.02 0.48 8.05 -51.93 -0.42 0.06 16 28 H 0.08 1.88 5.91 -51.93 -0.31 1.57 16 29 H 0.27 7.74 7.10 -40.82 -0.29 7.45 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 1.55 7.98 -51.93 -0.41 1.13 16 32 H 0.07 1.41 6.42 -51.93 -0.33 1.08 16 33 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.08 1.87 7.25 -51.93 -0.38 1.50 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 274.52 15.07 4.14 4.14 Total: -1.00 -27.21 274.52 -6.46 -33.67 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.83 Total: 0.80 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 0.34 Total: -10.54 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.39 Total: -38.66 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.41 Total: -8.82 kcal Atomic # 14 Polarization: 24.51 SS G_CDS: -5.10 Total: 19.41 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.21 -6.46 -33.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.200 kcal (2) G-P(sol) polarization free energy of solvation -27.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds