Wall clock time and date at job start Mon Mar 30 2020 02:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47476 * 2 1 4 4 C 1.53002 * 109.46852 * 120.00153 * 2 1 3 5 5 N 1.46498 * 109.46971 * 175.80316 * 4 2 1 6 6 C 1.36939 * 120.00126 * 95.16896 * 5 4 2 7 7 H 1.08003 * 120.00237 * 222.18056 * 6 5 4 8 8 C 1.38813 * 120.00080 * 42.17323 * 6 5 4 9 9 N 1.31618 * 119.99792 * 23.02016 * 8 6 5 10 10 Si 1.86793 * 120.00080 * 203.02036 * 8 6 5 11 11 H 1.48501 * 109.46977 * 179.97438 * 10 8 6 12 12 H 1.48499 * 109.47445 * 299.99822 * 10 8 6 13 13 H 1.48503 * 109.47400 * 59.99995 * 10 8 6 14 14 C 1.46501 * 120.00036 * 275.16585 * 5 4 2 15 15 H 1.08994 * 110.43707 * 359.30449 * 14 5 4 16 16 C 1.54815 * 110.48566 * 121.84808 * 14 5 4 17 17 C 1.55342 * 101.93652 * 97.82315 * 16 14 5 18 18 O 1.44383 * 103.50121 * 37.05207 * 17 16 14 19 19 C 1.43744 * 106.97398 * 319.90944 * 18 17 16 20 20 H 1.08998 * 109.46730 * 300.00052 * 1 2 3 21 21 H 1.08997 * 109.47137 * 59.99541 * 1 2 3 22 22 H 1.08999 * 109.47405 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.46743 * 239.99196 * 2 1 3 24 24 H 1.09006 * 109.47082 * 306.07824 * 3 2 1 25 25 H 1.09001 * 109.47018 * 66.07820 * 3 2 1 26 26 H 1.09003 * 109.47001 * 186.07996 * 3 2 1 27 27 H 1.09000 * 109.47180 * 55.80513 * 4 2 1 28 28 H 1.09001 * 109.47047 * 295.80251 * 4 2 1 29 29 H 0.97004 * 119.99946 * 1.80975 * 9 8 6 30 30 H 1.09003 * 110.90470 * 215.99631 * 16 14 5 31 31 H 1.09004 * 110.90792 * 339.59374 * 16 14 5 32 32 H 1.08998 * 110.63726 * 278.53489 * 17 16 14 33 33 H 1.08996 * 110.58647 * 155.54287 * 17 16 14 34 34 H 1.09002 * 109.88024 * 267.09111 * 19 18 17 35 35 H 1.09001 * 109.88124 * 145.93893 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5015 -0.8095 1.1998 6 6 4.2661 0.1327 1.8345 7 1 5.1461 0.5297 1.3502 8 6 3.9103 0.5775 3.1004 9 7 3.1563 -0.1742 3.8742 10 14 4.5014 2.2429 3.7055 11 1 3.9873 2.4818 5.0781 12 1 5.9862 2.2653 3.7218 13 1 4.0003 3.3059 2.7977 14 6 4.1450 -1.9056 0.4714 15 1 3.3946 -2.5675 0.0390 16 6 5.0771 -1.3491 -0.6324 17 6 6.4657 -1.4045 0.0617 18 8 6.4061 -2.6202 0.8382 19 6 5.0864 -2.6931 1.4032 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5140 -0.8900 24 1 1.5907 1.9867 -0.8306 25 1 1.7684 1.9239 0.9394 26 1 3.1247 1.4443 -0.1088 27 1 1.6166 -1.7250 1.2876 28 1 1.7393 -0.1659 2.1377 29 1 2.8711 -1.0502 3.5703 30 1 5.0572 -1.9867 -1.5162 31 1 4.8085 -0.3240 -0.8879 32 1 6.6051 -0.5405 0.7114 33 1 7.2627 -1.4612 -0.6796 34 1 5.0834 -2.2457 2.3971 35 1 4.7652 -3.7331 1.4617 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:32 Heat of formation + Delta-G solvation = -58.390859 kcal Electronic energy + Delta-G solvation = -15598.744939 eV Core-core repulsion = 13210.181334 eV Total energy + Delta-G solvation = -2388.563605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.42037 -38.02953 -35.16215 -33.45276 -30.99157 -29.38775 -27.95888 -27.25963 -24.48951 -23.41406 -21.70335 -20.75394 -18.88842 -17.49099 -17.10533 -16.12694 -15.86258 -15.55909 -15.34405 -15.14101 -14.57783 -13.99318 -13.68765 -13.42839 -13.04912 -12.72126 -12.58483 -12.43083 -12.27402 -12.03751 -11.99776 -11.84948 -11.73121 -11.52605 -11.39091 -11.15141 -10.52558 -10.32691 -8.69531 -8.04388 -5.45895 1.57433 1.62827 1.80106 2.64832 3.12643 3.31490 3.52583 3.95044 4.11551 4.14946 4.28494 4.34053 4.43435 4.46576 4.59838 4.77561 4.87529 4.90258 4.91709 4.94953 5.10675 5.11277 5.14266 5.22921 5.26849 5.30707 5.38532 5.67239 5.69724 5.95329 6.14370 6.52607 7.23154 7.85985 8.33944 9.08299 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.019793 B = 0.016530 C = 0.011106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.337706 B = 1693.530186 C = 2520.517065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.105 4.105 3 C -0.117 4.117 4 C 0.151 3.849 5 N -0.592 5.592 6 C -0.325 4.325 7 H 0.041 0.959 8 C -0.060 4.060 9 N -0.936 5.936 10 Si 1.095 2.905 11 H -0.296 1.296 12 H -0.281 1.281 13 H -0.277 1.277 14 C 0.137 3.863 15 H 0.077 0.923 16 C -0.150 4.150 17 C 0.051 3.949 18 O -0.403 6.403 19 C 0.043 3.957 20 H 0.041 0.959 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.026 0.974 28 H 0.041 0.959 29 H 0.256 0.744 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.031 0.969 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -0.452 -9.448 9.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 C -0.175 4.175 4 C 0.025 3.975 5 N -0.314 5.314 6 C -0.455 4.455 7 H 0.059 0.941 8 C -0.259 4.259 9 N -0.577 5.577 10 Si 0.922 3.078 11 H -0.223 1.223 12 H -0.208 1.208 13 H -0.203 1.203 14 C 0.029 3.971 15 H 0.095 0.905 16 C -0.189 4.189 17 C -0.025 4.025 18 O -0.323 6.323 19 C -0.036 4.036 20 H 0.061 0.939 21 H 0.085 0.915 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.044 0.956 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.049 0.951 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.988 0.465 -8.130 8.203 hybrid contribution -0.022 -0.972 -0.748 1.226 sum -1.010 -0.507 -8.878 8.949 Atomic orbital electron populations 1.21738 0.94661 1.01573 1.01477 1.21552 0.95421 0.96789 0.98749 1.21507 1.00782 0.95771 0.99398 1.20976 0.83389 0.96530 0.96588 1.44080 1.00949 1.26178 1.60185 1.19634 1.10551 1.17142 0.98199 0.94135 1.26917 0.99960 1.06347 0.92648 1.70897 1.39493 1.10895 1.36413 0.83100 0.75915 0.73424 0.75364 1.22283 1.20764 1.20290 1.21908 0.94252 0.89359 0.91589 0.90496 1.23408 0.95302 1.01997 0.98234 1.23631 0.98420 0.86875 0.93586 1.88685 1.32568 1.42586 1.68414 1.23612 0.82827 0.99810 0.97354 0.93935 0.91516 0.92493 0.92198 0.92710 0.95552 0.93649 0.95530 0.94066 0.93412 0.89510 0.90998 0.93965 0.87670 0.95053 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.02 9.19 71.98 0.66 -3.36 16 2 C -0.10 -3.72 3.13 -10.79 -0.03 -3.75 16 3 C -0.12 -4.36 8.60 71.98 0.62 -3.74 16 4 C 0.15 6.53 4.10 86.38 0.35 6.88 16 5 N -0.59 -27.00 1.86 -672.54 -1.25 -28.25 16 6 C -0.32 -16.64 6.02 84.03 0.51 -16.13 16 7 H 0.04 2.15 6.01 -2.91 -0.02 2.13 16 8 C -0.06 -3.27 4.81 84.86 0.41 -2.86 16 9 N -0.94 -55.05 12.52 21.65 0.27 -54.78 16 10 Si 1.10 50.27 29.98 68.60 2.06 52.33 16 11 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 C 0.14 5.42 3.63 45.98 0.17 5.59 16 15 H 0.08 2.77 7.92 -2.39 -0.02 2.75 16 16 C -0.15 -5.19 6.34 32.02 0.20 -4.99 16 17 C 0.05 1.85 7.38 72.79 0.54 2.39 16 18 O -0.40 -16.63 11.52 -148.98 -1.72 -18.35 16 19 C 0.04 1.79 7.19 72.35 0.52 2.31 16 20 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 21 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 24 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 25 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.04 1.85 7.02 -2.39 -0.02 1.84 16 27 H 0.03 1.10 8.05 -2.39 -0.02 1.08 16 28 H 0.04 2.09 5.91 -2.39 -0.01 2.08 16 29 H 0.26 15.28 7.10 -92.71 -0.66 14.62 16 30 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.63 7.98 -2.39 -0.02 2.61 16 32 H 0.04 1.74 6.42 -2.39 -0.02 1.73 16 33 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.03 1.60 7.25 -2.39 -0.02 1.58 16 35 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -59.18 274.52 4.45 -54.73 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 1.15 Total: 11.99 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 3.94 Total: -17.67 kcal Atomic # 7 Polarization: -82.05 SS G_CDS: -0.98 Total: -83.03 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -1.72 Total: -18.35 kcal Atomic # 14 Polarization: 50.27 SS G_CDS: 2.06 Total: 52.33 kcal Total: -59.18 4.45 -54.73 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.658 kcal (2) G-P(sol) polarization free energy of solvation -59.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds