Wall clock time and date at job start Mon Mar 30 2020 02:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00528 * 2 1 3 5 5 N 1.46502 * 109.47360 * 64.99830 * 4 2 1 6 6 C 1.36942 * 119.99879 * 89.99640 * 5 4 2 7 7 H 1.08005 * 119.99932 * 214.25211 * 6 5 4 8 8 C 1.38811 * 119.99805 * 34.53179 * 6 5 4 9 9 N 1.31611 * 120.00150 * 22.97317 * 8 6 5 10 10 Si 1.86801 * 119.99675 * 202.97095 * 8 6 5 11 11 H 1.48500 * 109.47109 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46768 * 120.00391 * 10 8 6 13 13 H 1.48498 * 109.47205 * 240.00086 * 10 8 6 14 14 C 1.46500 * 120.00046 * 270.00375 * 5 4 2 15 15 H 1.09000 * 110.43851 * 2.90700 * 14 5 4 16 16 C 1.54814 * 110.48462 * 240.21846 * 14 5 4 17 17 C 1.54994 * 102.09160 * 220.44133 * 16 14 5 18 18 O 1.44373 * 103.49136 * 37.02632 * 17 16 14 19 19 C 1.43746 * 106.97647 * 319.93987 * 18 17 16 20 20 H 1.08999 * 109.46764 * 299.99162 * 1 2 3 21 21 H 1.08995 * 109.47380 * 59.99377 * 1 2 3 22 22 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46674 * 240.00589 * 2 1 3 24 24 H 1.09006 * 109.46769 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.47609 * 300.00483 * 3 2 1 26 26 H 1.09008 * 109.46973 * 60.00772 * 3 2 1 27 27 H 1.09001 * 109.47253 * 305.00146 * 4 2 1 28 28 H 1.08995 * 109.47196 * 184.99629 * 4 2 1 29 29 H 0.97006 * 120.00008 * 174.74688 * 9 8 6 30 30 H 1.08996 * 110.90992 * 338.64034 * 16 14 5 31 31 H 1.09004 * 110.90439 * 102.24631 * 16 14 5 32 32 H 1.08996 * 110.61883 * 278.52231 * 17 16 14 33 33 H 1.09002 * 110.61586 * 155.52383 * 17 16 14 34 34 H 1.09004 * 109.87756 * 267.09045 * 19 18 17 35 35 H 1.08993 * 110.00743 * 146.00773 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 2.4847 -3.0475 0.6019 7 1 2.0700 -3.8864 0.0626 8 6 3.8612 -2.8997 0.7036 9 7 4.3765 -2.1975 1.6903 10 14 4.9820 -3.6973 -0.5600 11 1 4.1609 -4.4256 -1.5604 12 1 5.7810 -2.6493 -1.2445 13 1 5.8952 -4.6507 0.1200 14 6 0.3746 -2.5661 1.7611 15 1 -0.1827 -1.7095 2.1404 16 6 0.6075 -3.6053 2.8847 17 6 -0.5317 -4.6239 2.6260 18 8 -0.6190 -4.6731 1.1858 19 6 -0.4556 -3.3268 0.7091 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6055 -0.2619 2.1369 28 1 3.1263 -0.6445 1.2950 29 1 5.3388 -2.1570 1.8059 30 1 1.5837 -4.0788 2.7804 31 1 0.5026 -3.1457 3.8674 32 1 -1.4686 -4.2691 3.0554 33 1 -0.2701 -5.6026 3.0283 34 1 -1.4308 -2.8536 0.5937 35 1 0.0698 -3.3305 -0.2458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261169083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:35 Heat of formation + Delta-G solvation = -36.983118 kcal Electronic energy + Delta-G solvation = -15473.400661 eV Core-core repulsion = 13085.765365 eV Total energy + Delta-G solvation = -2387.635296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.72497 -36.22527 -33.39202 -31.58317 -29.53339 -27.85373 -26.39321 -25.41651 -22.95890 -21.70433 -19.73014 -19.27043 -16.46282 -15.82005 -15.24301 -14.80223 -14.26503 -13.90858 -13.49116 -13.28559 -13.01131 -12.23372 -11.98794 -11.64792 -11.36120 -11.25351 -10.96694 -10.84724 -10.63280 -10.59162 -10.44239 -10.23306 -9.89603 -9.78731 -9.57118 -9.47248 -9.03396 -8.43817 -6.52942 -5.78412 -3.29659 3.36537 3.45781 3.49715 4.47541 4.69827 5.25707 5.33118 5.59366 5.72963 5.76551 5.79197 5.85568 5.92939 6.03855 6.16774 6.23408 6.35423 6.40531 6.44129 6.50410 6.57972 6.60182 6.70204 6.86915 6.98640 7.03283 7.16395 7.34062 7.62446 7.75898 7.91052 8.54727 9.21618 9.84209 10.39978 11.23431 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.015732 C = 0.010380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.424611 B = 1779.389211 C = 2696.815043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.118 4.118 3 C -0.139 4.139 4 C 0.149 3.851 5 N -0.572 5.572 6 C -0.252 4.252 7 H 0.066 0.934 8 C 0.012 3.988 9 N -0.891 5.891 10 Si 0.895 3.105 11 H -0.276 1.276 12 H -0.289 1.289 13 H -0.291 1.291 14 C 0.144 3.856 15 H 0.061 0.939 16 C -0.166 4.166 17 C 0.047 3.953 18 O -0.385 6.385 19 C 0.034 3.966 20 H 0.039 0.961 21 H 0.034 0.966 22 H 0.059 0.941 23 H 0.066 0.934 24 H 0.050 0.950 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.019 0.981 28 H 0.101 0.899 29 H 0.254 0.746 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.832 2.516 0.159 7.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.139 4.139 3 C -0.197 4.197 4 C 0.023 3.977 5 N -0.291 5.291 6 C -0.382 4.382 7 H 0.084 0.916 8 C -0.188 4.188 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.200 1.200 12 H -0.215 1.215 13 H -0.218 1.218 14 C 0.036 3.964 15 H 0.079 0.921 16 C -0.205 4.205 17 C -0.030 4.030 18 O -0.303 6.303 19 C -0.044 4.044 20 H 0.058 0.942 21 H 0.053 0.947 22 H 0.078 0.922 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.038 0.962 28 H 0.118 0.882 29 H 0.064 0.936 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.680 2.425 0.032 7.106 hybrid contribution 0.652 -0.177 -0.420 0.796 sum -6.028 2.248 -0.388 6.445 Atomic orbital electron populations 1.21867 0.97124 1.01438 0.99347 1.21734 0.94629 0.94825 1.02722 1.21750 1.00821 0.97174 0.99982 1.21098 1.02904 0.82193 0.91494 1.43942 1.16462 1.03211 1.65494 1.19048 0.86578 1.06797 1.25756 0.91616 1.25093 0.97491 0.99215 0.96992 1.69896 1.11125 1.43689 1.28676 0.86339 0.80737 0.78637 0.81820 1.20041 1.21535 1.21792 1.21765 0.89148 0.94618 0.90914 0.92077 1.23578 1.00246 0.97705 0.98991 1.23412 0.97228 0.99928 0.82460 1.88788 1.93916 1.27853 1.19782 1.23760 0.97611 0.82596 1.00483 0.94189 0.94681 0.92164 0.91526 0.93075 0.94166 0.93678 0.96211 0.88194 0.93558 0.88763 0.92238 0.93740 0.90307 0.94429 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.47 37.16 0.31 -2.09 16 2 C -0.12 -2.30 3.13 -90.62 -0.28 -2.58 16 3 C -0.14 -2.34 9.19 37.16 0.34 -2.00 16 4 C 0.15 3.38 4.74 -4.04 -0.02 3.36 16 5 N -0.57 -13.53 2.27 -163.93 -0.37 -13.90 16 6 C -0.25 -6.65 7.79 -15.06 -0.12 -6.76 16 7 H 0.07 1.80 7.04 -52.48 -0.37 1.43 16 8 C 0.01 0.32 4.94 -17.43 -0.09 0.23 16 9 N -0.89 -24.96 11.35 55.49 0.63 -24.33 16 10 Si 0.89 21.53 29.62 -169.99 -5.03 16.49 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 14 C 0.14 2.97 2.37 -66.40 -0.16 2.82 16 15 H 0.06 1.17 7.40 -51.93 -0.38 0.79 16 16 C -0.17 -3.30 6.73 -24.72 -0.17 -3.47 16 17 C 0.05 0.82 7.72 38.21 0.29 1.12 16 18 O -0.38 -7.88 11.52 -35.23 -0.41 -8.28 16 19 C 0.03 0.67 5.56 37.73 0.21 0.88 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 21 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 1.07 4.90 -51.93 -0.25 0.82 16 23 H 0.07 1.43 8.14 -51.92 -0.42 1.01 16 24 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.71 8.14 -51.92 -0.42 0.28 16 27 H 0.02 0.43 7.97 -51.93 -0.41 0.02 16 28 H 0.10 2.60 5.35 -51.93 -0.28 2.32 16 29 H 0.25 6.92 8.32 -40.82 -0.34 6.58 16 30 H 0.09 2.22 7.22 -51.93 -0.38 1.84 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.04 0.66 7.93 -51.93 -0.41 0.25 16 35 H 0.09 1.95 6.88 -51.93 -0.36 1.59 16 LS Contribution 273.01 15.07 4.11 4.11 Total: -1.00 -27.67 273.01 -6.52 -34.19 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -5.78 Total: 0.22 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 0.33 Total: -8.50 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.26 Total: -38.24 kcal Atomic # 8 Polarization: -7.88 SS G_CDS: -0.41 Total: -8.28 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.67 -6.52 -34.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.792 kcal (2) G-P(sol) polarization free energy of solvation -27.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds