Wall clock time and date at job start Mon Mar 30 2020 02:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46906 * 2 1 4 4 C 1.52996 * 109.47309 * 120.00528 * 2 1 3 5 5 N 1.46502 * 109.47360 * 64.99830 * 4 2 1 6 6 C 1.36942 * 119.99879 * 89.99640 * 5 4 2 7 7 H 1.08005 * 119.99932 * 214.25211 * 6 5 4 8 8 C 1.38811 * 119.99805 * 34.53179 * 6 5 4 9 9 N 1.31611 * 120.00150 * 22.97317 * 8 6 5 10 10 Si 1.86801 * 119.99675 * 202.97095 * 8 6 5 11 11 H 1.48500 * 109.47109 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46768 * 120.00391 * 10 8 6 13 13 H 1.48498 * 109.47205 * 240.00086 * 10 8 6 14 14 C 1.46500 * 120.00046 * 270.00375 * 5 4 2 15 15 H 1.09000 * 110.43851 * 2.90700 * 14 5 4 16 16 C 1.54814 * 110.48462 * 240.21846 * 14 5 4 17 17 C 1.54994 * 102.09160 * 220.44133 * 16 14 5 18 18 O 1.44373 * 103.49136 * 37.02632 * 17 16 14 19 19 C 1.43746 * 106.97647 * 319.93987 * 18 17 16 20 20 H 1.08999 * 109.46764 * 299.99162 * 1 2 3 21 21 H 1.08995 * 109.47380 * 59.99377 * 1 2 3 22 22 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46674 * 240.00589 * 2 1 3 24 24 H 1.09006 * 109.46769 * 180.02562 * 3 2 1 25 25 H 1.08995 * 109.47609 * 300.00483 * 3 2 1 26 26 H 1.09008 * 109.46973 * 60.00772 * 3 2 1 27 27 H 1.09001 * 109.47253 * 305.00146 * 4 2 1 28 28 H 1.08995 * 109.47196 * 184.99629 * 4 2 1 29 29 H 0.97006 * 120.00008 * 174.74688 * 9 8 6 30 30 H 1.08996 * 110.90992 * 338.64034 * 16 14 5 31 31 H 1.09004 * 110.90439 * 102.24631 * 16 14 5 32 32 H 1.08996 * 110.61883 * 278.52231 * 17 16 14 33 33 H 1.09002 * 110.61586 * 155.52383 * 17 16 14 34 34 H 1.09004 * 109.87756 * 267.09045 * 19 18 17 35 35 H 1.08993 * 110.00743 * 146.00773 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 2.4847 -3.0475 0.6019 7 1 2.0700 -3.8864 0.0626 8 6 3.8612 -2.8997 0.7036 9 7 4.3765 -2.1975 1.6903 10 14 4.9820 -3.6973 -0.5600 11 1 4.1609 -4.4256 -1.5604 12 1 5.7810 -2.6493 -1.2445 13 1 5.8952 -4.6507 0.1200 14 6 0.3746 -2.5661 1.7611 15 1 -0.1827 -1.7095 2.1404 16 6 0.6075 -3.6053 2.8847 17 6 -0.5317 -4.6239 2.6260 18 8 -0.6190 -4.6731 1.1858 19 6 -0.4556 -3.3268 0.7091 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6055 -0.2619 2.1369 28 1 3.1263 -0.6445 1.2950 29 1 5.3388 -2.1570 1.8059 30 1 1.5837 -4.0788 2.7804 31 1 0.5026 -3.1457 3.8674 32 1 -1.4686 -4.2691 3.0554 33 1 -0.2701 -5.6026 3.0283 34 1 -1.4308 -2.8536 0.5937 35 1 0.0698 -3.3305 -0.2458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261169083.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:34 Heat of formation + Delta-G solvation = -53.238780 kcal Electronic energy + Delta-G solvation = -15474.105559 eV Core-core repulsion = 13085.765365 eV Total energy + Delta-G solvation = -2388.340194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.32449 -37.88942 -35.08834 -33.45530 -31.19188 -29.45799 -27.76983 -27.31482 -24.70197 -23.23362 -21.48315 -20.85195 -18.33587 -17.50885 -16.88393 -16.44634 -16.09236 -15.47920 -15.21734 -14.87123 -14.62823 -13.76016 -13.60877 -13.14631 -13.00940 -12.84539 -12.78628 -12.66892 -12.26091 -12.17490 -12.10828 -11.98529 -11.55392 -11.42991 -11.25904 -11.18482 -10.65263 -10.35551 -8.47113 -7.80767 -5.34607 1.41647 1.46493 1.55522 2.50410 3.16556 3.27005 3.58903 4.04437 4.24119 4.28787 4.38817 4.40674 4.45150 4.50428 4.62640 4.87920 4.91298 4.92482 4.96605 5.00042 5.04064 5.08968 5.23866 5.28795 5.46203 5.48183 5.55950 5.70597 5.76776 5.93527 6.12169 6.53061 7.21738 7.92463 8.41330 9.16894 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.019763 B = 0.015732 C = 0.010380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.424611 B = 1779.389211 C = 2696.815043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.113 4.113 3 C -0.133 4.133 4 C 0.150 3.850 5 N -0.583 5.583 6 C -0.245 4.245 7 H 0.051 0.949 8 C -0.034 4.034 9 N -0.917 5.917 10 Si 0.946 3.054 11 H -0.273 1.273 12 H -0.290 1.290 13 H -0.293 1.293 14 C 0.139 3.861 15 H 0.081 0.919 16 C -0.165 4.165 17 C 0.052 3.948 18 O -0.406 6.406 19 C 0.043 3.957 20 H 0.054 0.946 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.038 0.962 24 H 0.036 0.964 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.065 0.935 29 H 0.250 0.750 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 3.101 0.161 9.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 C -0.191 4.191 4 C 0.024 3.976 5 N -0.303 5.303 6 C -0.376 4.376 7 H 0.068 0.932 8 C -0.231 4.231 9 N -0.562 5.562 10 Si 0.775 3.225 11 H -0.198 1.198 12 H -0.216 1.216 13 H -0.220 1.220 14 C 0.031 3.969 15 H 0.100 0.900 16 C -0.204 4.204 17 C -0.024 4.024 18 O -0.326 6.326 19 C -0.036 4.036 20 H 0.073 0.927 21 H 0.074 0.926 22 H 0.069 0.931 23 H 0.057 0.943 24 H 0.055 0.945 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.555 3.007 0.031 9.069 hybrid contribution 1.170 -0.363 -0.384 1.284 sum -7.385 2.645 -0.353 7.852 Atomic orbital electron populations 1.21778 0.94778 1.01397 1.01085 1.21586 0.96587 0.95692 0.99533 1.21687 0.99973 0.95643 1.01799 1.21013 1.00970 0.82262 0.93322 1.44061 1.17120 1.03268 1.65838 1.19027 0.87059 1.06441 1.25044 0.93158 1.25617 0.98589 1.00484 0.98405 1.70010 1.10861 1.45285 1.30063 0.85537 0.79178 0.77738 0.80029 1.19812 1.21640 1.22003 1.21964 0.87970 0.95611 0.91378 0.90050 1.23483 0.99064 0.98178 0.99715 1.23563 0.97655 1.00138 0.81070 1.88761 1.94006 1.28253 1.21557 1.23631 0.98592 0.82492 0.98846 0.92709 0.92632 0.93093 0.94324 0.94453 0.91868 0.92260 0.95693 0.91713 0.94030 0.93119 0.90537 0.90252 0.88951 0.91355 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.19 8.47 71.98 0.61 -3.58 16 2 C -0.11 -4.29 3.13 -10.80 -0.03 -4.33 16 3 C -0.13 -4.24 9.19 71.98 0.66 -3.58 16 4 C 0.15 6.80 4.74 86.38 0.41 7.21 16 5 N -0.58 -27.66 2.27 -672.54 -1.53 -29.19 16 6 C -0.25 -13.18 7.79 84.03 0.65 -12.53 16 7 H 0.05 2.83 7.04 -2.91 -0.02 2.81 16 8 C -0.03 -1.88 4.94 84.86 0.42 -1.46 16 9 N -0.92 -52.81 11.35 21.65 0.25 -52.57 16 10 Si 0.95 45.26 29.62 68.60 2.03 47.29 16 11 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 14 C 0.14 5.51 2.37 45.98 0.11 5.62 16 15 H 0.08 2.90 7.40 -2.39 -0.02 2.88 16 16 C -0.16 -6.37 6.73 31.90 0.21 -6.16 16 17 C 0.05 1.69 7.72 72.66 0.56 2.25 16 18 O -0.41 -15.92 11.52 -148.98 -1.72 -17.64 16 19 C 0.04 1.61 5.56 72.35 0.40 2.01 16 20 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 21 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 22 H 0.05 1.69 4.90 -2.39 -0.01 1.68 16 23 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 24 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 25 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.02 1.07 7.97 -2.39 -0.02 1.05 16 28 H 0.07 3.45 5.35 -2.39 -0.01 3.44 16 29 H 0.25 14.02 8.32 -92.70 -0.77 13.25 16 30 H 0.05 2.41 7.22 -2.39 -0.02 2.39 16 31 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.07 2.17 7.93 -2.38 -0.02 2.15 16 35 H 0.07 2.79 6.88 -2.39 -0.02 2.77 16 Total: -1.00 -60.08 273.01 4.08 -55.99 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 1.04 Total: 10.64 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.01 Total: -14.54 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.28 Total: -81.75 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -1.72 Total: -17.64 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -60.08 4.08 -55.99 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261169083.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.755 kcal (2) G-P(sol) polarization free energy of solvation -60.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds