Wall clock time and date at job start Mon Mar 30 2020 02:23:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.53000 * 109.47432 * 119.99992 * 2 1 3 5 5 H 1.09004 * 109.05030 * 55.54577 * 4 2 1 6 6 C 1.51040 * 109.06647 * 174.55722 * 4 2 1 7 7 O 1.43446 * 107.55866 * 214.49723 * 6 4 2 8 8 C 1.36620 * 117.83874 * 277.90013 * 7 6 4 9 9 C 1.54714 * 110.74966 * 61.05944 * 8 7 6 10 10 C 1.51000 * 109.07512 * 286.59948 * 9 8 7 11 11 H 1.09006 * 108.77246 * 331.16456 * 10 9 8 12 12 C 1.50704 * 108.67760 * 212.96352 * 10 9 8 13 13 H 1.08005 * 119.99846 * 236.49914 * 12 10 9 14 14 C 1.37873 * 119.99771 * 56.49349 * 12 10 9 15 15 N 1.31507 * 120.00439 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99677 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47163 * 60.00022 * 16 14 12 18 18 H 1.48499 * 109.47410 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47401 * 300.00280 * 16 14 12 20 20 N 1.47396 * 109.00775 * 296.57597 * 4 2 1 21 21 H 1.09006 * 109.47234 * 305.04464 * 1 2 3 22 22 H 1.08998 * 109.46965 * 65.04320 * 1 2 3 23 23 H 1.08996 * 109.47334 * 185.04354 * 1 2 3 24 24 H 1.08998 * 109.47479 * 240.00372 * 2 1 3 25 25 H 1.09000 * 109.47031 * 300.00213 * 3 2 1 26 26 H 1.09001 * 109.46894 * 60.00261 * 3 2 1 27 27 H 1.08995 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.83994 * 94.97982 * 6 4 2 29 29 H 1.09001 * 109.89302 * 334.03983 * 6 4 2 30 30 H 1.09005 * 109.21310 * 181.37586 * 8 7 6 31 31 H 1.08995 * 109.21423 * 300.74747 * 8 7 6 32 32 H 1.09004 * 109.53476 * 46.52671 * 9 8 7 33 33 H 1.09001 * 109.53673 * 166.75708 * 9 8 7 34 34 H 0.97002 * 120.00051 * 179.97438 * 15 14 12 35 35 H 1.00910 * 111.00002 * 72.76782 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6091 -1.7219 1.2832 6 6 3.5444 -0.8342 1.1741 7 8 3.9157 -2.0796 1.7813 8 6 4.0149 -2.1208 3.1433 9 6 2.6556 -1.7866 3.8023 10 6 2.3885 -0.3073 3.6594 11 1 3.3421 0.2195 3.6224 12 6 1.6226 0.1638 4.8688 13 1 0.6688 0.6555 4.7462 14 6 2.1395 -0.0329 6.1318 15 7 3.3011 -0.6312 6.2811 16 14 1.1899 0.5504 7.6309 17 1 -0.1311 -0.1267 7.6744 18 1 1.9554 0.2225 8.8603 19 1 0.9904 2.0197 7.5497 20 7 1.6123 0.0279 2.4444 21 1 -0.3634 0.5901 0.8414 22 1 -0.3633 0.4336 -0.9317 23 1 -0.3634 -1.0236 0.0903 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 4.0049 -0.0072 1.7145 29 1 3.8658 -0.8200 0.1326 30 1 4.3266 -3.1193 3.4502 31 1 4.7602 -1.3960 3.4707 32 1 1.8633 -2.3501 3.3095 33 1 2.6885 -2.0501 4.8594 34 1 3.6649 -0.7693 7.1696 35 1 0.6224 -0.0830 2.6056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261245762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:24 Heat of formation + Delta-G solvation = -53.699919 kcal Electronic energy + Delta-G solvation = -15466.169784 eV Core-core repulsion = 13077.809593 eV Total energy + Delta-G solvation = -2388.360191 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24454 -36.10601 -34.44735 -31.74609 -30.02720 -27.32884 -26.60031 -26.08686 -23.42610 -21.41418 -20.18672 -18.34579 -16.79147 -15.74981 -15.49097 -15.12666 -14.43736 -14.31238 -13.67367 -13.25576 -12.82478 -12.50281 -12.20706 -11.71669 -11.44991 -11.23906 -11.14337 -10.91201 -10.79265 -10.54407 -10.42478 -10.28999 -10.12031 -9.86894 -9.64240 -8.94623 -8.60812 -8.27101 -7.20067 -6.04563 -4.12230 3.29190 3.33884 3.36609 4.37109 4.52873 5.18301 5.22848 5.28900 5.33018 5.53575 5.88492 5.92873 5.95739 6.03163 6.14672 6.23774 6.26262 6.30068 6.38823 6.47685 6.58007 6.62725 6.71692 6.91923 6.97034 7.19050 7.44257 7.75400 7.80123 8.10880 8.30934 8.53539 8.67055 8.98674 9.53216 10.99305 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033174 B = 0.010519 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.838979 B = 2661.328568 C = 3229.788003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.085 4.085 3 C -0.136 4.136 4 C 0.065 3.935 5 H 0.037 0.963 6 C 0.073 3.927 7 O -0.401 6.401 8 C 0.076 3.924 9 C -0.169 4.169 10 C 0.213 3.787 11 H 0.033 0.967 12 C -0.512 4.512 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.889 5.889 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 N -0.686 5.686 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.060 0.940 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.029 0.971 33 H 0.107 0.893 34 H 0.261 0.739 35 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -0.148 -8.989 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.193 4.193 4 C -0.045 4.045 5 H 0.055 0.945 6 C -0.003 4.003 7 O -0.320 6.320 8 C -0.001 4.001 9 C -0.209 4.209 10 C 0.106 3.894 11 H 0.051 0.949 12 C -0.551 4.551 13 H 0.077 0.923 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.725 3.275 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.203 1.203 20 N -0.317 5.317 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.078 0.922 25 H 0.056 0.944 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.125 0.875 34 H 0.071 0.929 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.030 0.171 -9.084 9.144 hybrid contribution -0.898 -0.382 1.356 1.671 sum -1.928 -0.211 -7.728 7.968 Atomic orbital electron populations 1.21802 0.95755 1.01183 1.01424 1.21157 0.95616 0.96996 0.96692 1.21703 1.00289 0.95826 1.01512 1.21765 0.95674 0.95212 0.91888 0.94467 1.22452 0.93990 0.86629 0.97213 1.86286 1.89409 1.34166 1.22106 1.21849 0.98161 1.00138 0.79959 1.22842 0.94163 0.99993 1.03921 1.19004 0.94337 0.90527 0.85542 0.94892 1.21251 1.05793 1.37618 0.90441 0.92322 1.24906 0.95128 0.95281 0.98925 1.69908 1.17678 1.42339 1.22908 0.86585 0.79771 0.79275 0.81907 1.20391 1.21342 1.20259 1.60763 1.08383 1.58756 1.03836 0.91869 0.93516 0.93477 0.92167 0.94385 0.90700 0.93507 0.91927 0.89835 0.90999 0.94593 0.95261 0.87466 0.92861 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.82 37.16 0.33 -1.66 16 2 C -0.09 -1.27 2.57 -90.62 -0.23 -1.51 16 3 C -0.14 -1.99 8.81 37.16 0.33 -1.66 16 4 C 0.07 1.19 1.78 -68.43 -0.12 1.06 16 5 H 0.04 0.73 7.24 -51.93 -0.38 0.36 16 6 C 0.07 1.35 4.99 36.17 0.18 1.53 16 7 O -0.40 -8.26 9.95 -21.75 -0.22 -8.48 16 8 C 0.08 1.66 6.43 38.06 0.24 1.90 16 9 C -0.17 -4.05 4.79 -26.83 -0.13 -4.18 16 10 C 0.21 5.25 2.11 -69.25 -0.15 5.10 16 11 H 0.03 0.91 6.54 -51.93 -0.34 0.57 16 12 C -0.51 -13.76 8.57 -34.44 -0.30 -14.06 16 13 H 0.06 1.56 7.68 -52.48 -0.40 1.16 16 14 C 0.06 1.59 5.03 -17.82 -0.09 1.50 16 15 N -0.89 -24.63 11.27 55.43 0.62 -24.00 16 16 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 N -0.69 -14.29 5.15 -101.89 -0.52 -14.81 16 21 H 0.06 0.92 7.28 -51.93 -0.38 0.54 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.06 0.82 7.96 -51.93 -0.41 0.41 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 27 H 0.05 0.67 7.37 -51.93 -0.38 0.29 16 28 H 0.06 1.25 6.78 -51.93 -0.35 0.90 16 29 H 0.08 1.31 7.64 -51.93 -0.40 0.91 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.04 0.83 7.72 -51.93 -0.40 0.43 16 32 H 0.03 0.68 7.24 -51.93 -0.38 0.31 16 33 H 0.11 2.86 5.52 -51.93 -0.29 2.57 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.33 6.87 7.37 -39.29 -0.29 6.58 16 LS Contribution 265.85 15.07 4.01 4.01 Total: -1.00 -27.08 265.85 -6.67 -33.75 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.61 Total: 5.49 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: 0.10 Total: -38.81 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.22 Total: -8.48 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -27.08 -6.67 -33.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.950 kcal (2) G-P(sol) polarization free energy of solvation -27.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds