Wall clock time and date at job start Mon Mar 30 2020 02:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47219 * 2 1 4 4 C 1.53000 * 109.47432 * 119.99992 * 2 1 3 5 5 H 1.09004 * 109.05030 * 55.54577 * 4 2 1 6 6 C 1.51040 * 109.06647 * 174.55722 * 4 2 1 7 7 O 1.43446 * 107.55866 * 214.49723 * 6 4 2 8 8 C 1.36620 * 117.83874 * 277.90013 * 7 6 4 9 9 C 1.54714 * 110.74966 * 61.05944 * 8 7 6 10 10 C 1.51000 * 109.07512 * 286.59948 * 9 8 7 11 11 H 1.09006 * 108.77246 * 331.16456 * 10 9 8 12 12 C 1.50704 * 108.67760 * 212.96352 * 10 9 8 13 13 H 1.08005 * 119.99846 * 236.49914 * 12 10 9 14 14 C 1.37873 * 119.99771 * 56.49349 * 12 10 9 15 15 N 1.31507 * 120.00439 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99677 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47163 * 60.00022 * 16 14 12 18 18 H 1.48499 * 109.47410 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47401 * 300.00280 * 16 14 12 20 20 N 1.47396 * 109.00775 * 296.57597 * 4 2 1 21 21 H 1.09006 * 109.47234 * 305.04464 * 1 2 3 22 22 H 1.08998 * 109.46965 * 65.04320 * 1 2 3 23 23 H 1.08996 * 109.47334 * 185.04354 * 1 2 3 24 24 H 1.08998 * 109.47479 * 240.00372 * 2 1 3 25 25 H 1.09000 * 109.47031 * 300.00213 * 3 2 1 26 26 H 1.09001 * 109.46894 * 60.00261 * 3 2 1 27 27 H 1.08995 * 109.47249 * 179.97438 * 3 2 1 28 28 H 1.08999 * 109.83994 * 94.97982 * 6 4 2 29 29 H 1.09001 * 109.89302 * 334.03983 * 6 4 2 30 30 H 1.09005 * 109.21310 * 181.37586 * 8 7 6 31 31 H 1.08995 * 109.21423 * 300.74747 * 8 7 6 32 32 H 1.09004 * 109.53476 * 46.52671 * 9 8 7 33 33 H 1.09001 * 109.53673 * 166.75708 * 9 8 7 34 34 H 0.97002 * 120.00051 * 179.97438 * 15 14 12 35 35 H 1.00910 * 111.00002 * 72.76782 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6091 -1.7219 1.2832 6 6 3.5444 -0.8342 1.1741 7 8 3.9157 -2.0796 1.7813 8 6 4.0149 -2.1208 3.1433 9 6 2.6556 -1.7866 3.8023 10 6 2.3885 -0.3073 3.6594 11 1 3.3421 0.2195 3.6224 12 6 1.6226 0.1638 4.8688 13 1 0.6688 0.6555 4.7462 14 6 2.1395 -0.0329 6.1318 15 7 3.3011 -0.6312 6.2811 16 14 1.1899 0.5504 7.6309 17 1 -0.1311 -0.1267 7.6744 18 1 1.9554 0.2225 8.8603 19 1 0.9904 2.0197 7.5497 20 7 1.6123 0.0279 2.4444 21 1 -0.3634 0.5901 0.8414 22 1 -0.3633 0.4336 -0.9317 23 1 -0.3634 -1.0236 0.0903 24 1 1.8934 -0.5138 -0.8900 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 0.0005 28 1 4.0049 -0.0072 1.7145 29 1 3.8658 -0.8200 0.1326 30 1 4.3266 -3.1193 3.4502 31 1 4.7602 -1.3960 3.4707 32 1 1.8633 -2.3501 3.3095 33 1 2.6885 -2.0501 4.8594 34 1 3.6649 -0.7693 7.1696 35 1 0.6224 -0.0830 2.6056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261245762.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:23 Heat of formation + Delta-G solvation = -70.923448 kcal Electronic energy + Delta-G solvation = -15466.916652 eV Core-core repulsion = 13077.809593 eV Total energy + Delta-G solvation = -2389.107059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.89375 -37.57500 -36.29323 -33.60260 -31.66079 -28.85354 -28.32451 -27.57405 -25.20043 -23.00893 -21.92539 -19.87093 -18.73000 -17.45285 -17.10882 -16.85175 -16.24662 -15.95540 -15.23836 -14.61144 -14.48404 -14.00625 -13.94064 -13.12973 -12.99174 -12.92579 -12.74099 -12.60271 -12.57879 -12.30674 -11.96798 -11.77845 -11.59340 -11.53457 -11.28830 -10.80320 -10.55966 -10.15711 -8.92707 -8.11205 -6.26247 1.42110 1.43052 1.50587 2.41063 2.92281 3.15220 3.58657 3.95969 4.00528 4.26466 4.35625 4.39904 4.51306 4.54772 4.65468 4.72792 4.86938 4.98211 5.01165 5.10003 5.15745 5.20646 5.31504 5.36664 5.45208 5.53811 5.66230 5.74345 5.80773 6.17954 6.50195 6.65424 6.87166 7.00095 7.43410 8.91326 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.033174 B = 0.010519 C = 0.008667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.838979 B = 2661.328568 C = 3229.788003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.080 4.080 3 C -0.132 4.132 4 C 0.065 3.935 5 H 0.026 0.974 6 C 0.070 3.930 7 O -0.402 6.402 8 C 0.088 3.912 9 C -0.160 4.160 10 C 0.223 3.777 11 H -0.003 1.003 12 C -0.534 4.534 13 H 0.055 0.945 14 C 0.014 3.986 15 N -0.911 5.911 16 Si 0.959 3.041 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.275 1.275 20 N -0.682 5.682 21 H 0.048 0.952 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.049 0.951 27 H 0.045 0.955 28 H 0.043 0.957 29 H 0.121 0.879 30 H 0.088 0.912 31 H 0.017 0.983 32 H 0.029 0.971 33 H 0.080 0.920 34 H 0.262 0.738 35 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.319 -0.083 -10.266 10.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 C -0.190 4.190 4 C -0.045 4.045 5 H 0.044 0.956 6 C -0.005 4.005 7 O -0.321 6.321 8 C 0.011 3.989 9 C -0.201 4.201 10 C 0.114 3.886 11 H 0.015 0.985 12 C -0.573 4.573 13 H 0.074 0.926 14 C -0.185 4.185 15 N -0.550 5.550 16 Si 0.785 3.215 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.200 1.200 20 N -0.314 5.314 21 H 0.067 0.933 22 H 0.089 0.911 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.139 0.861 30 H 0.106 0.894 31 H 0.035 0.965 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.752 0.239 -10.381 10.531 hybrid contribution -0.666 -0.384 1.696 1.862 sum -2.418 -0.145 -8.686 9.017 Atomic orbital electron populations 1.21774 0.94768 1.01241 1.02110 1.21157 0.96456 0.96850 0.95422 1.21656 1.00208 0.95594 1.01512 1.21874 0.95541 0.94858 0.92206 0.95571 1.22693 0.94096 0.85133 0.98625 1.86284 1.89397 1.35304 1.21076 1.21649 0.96282 1.00418 0.80593 1.22674 0.95488 0.99513 1.02377 1.18726 0.92889 0.90310 0.86661 0.98519 1.21570 1.05976 1.38004 0.91707 0.92644 1.25645 0.95965 0.95333 1.01556 1.70031 1.18763 1.42839 1.23407 0.85602 0.78637 0.78732 0.78550 1.19738 1.20986 1.20009 1.60666 1.07970 1.59314 1.03406 0.93280 0.91131 0.93381 0.89720 0.91848 0.93211 0.93622 0.93893 0.86150 0.89418 0.96478 0.95241 0.90158 0.92884 0.85029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.53 8.82 71.98 0.63 -2.89 16 2 C -0.08 -2.17 2.57 -10.79 -0.03 -2.19 16 3 C -0.13 -3.57 8.81 71.98 0.63 -2.93 16 4 C 0.07 2.30 1.78 44.18 0.08 2.38 16 5 H 0.03 1.00 7.24 -2.38 -0.02 0.98 16 6 C 0.07 2.50 4.99 71.34 0.36 2.86 16 7 O -0.40 -16.17 9.95 -100.74 -1.00 -17.18 16 8 C 0.09 3.86 6.43 72.57 0.47 4.33 16 9 C -0.16 -7.81 4.79 30.53 0.15 -7.67 16 10 C 0.22 11.21 2.11 43.30 0.09 11.30 16 11 H 0.00 -0.17 6.54 -2.38 -0.02 -0.18 16 12 C -0.53 -29.18 8.57 25.60 0.22 -28.96 16 13 H 0.06 2.99 7.68 -2.91 -0.02 2.97 16 14 C 0.01 0.78 5.03 84.65 0.43 1.20 16 15 N -0.91 -51.37 11.27 21.44 0.24 -51.13 16 16 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 20 N -0.68 -28.54 5.15 -476.29 -2.45 -30.99 16 21 H 0.05 1.35 7.28 -2.38 -0.02 1.34 16 22 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.08 1.95 7.96 -2.39 -0.02 1.93 16 25 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.05 1.59 7.49 -2.39 -0.02 1.58 16 27 H 0.04 1.22 7.37 -2.39 -0.02 1.20 16 28 H 0.04 1.72 6.78 -2.39 -0.02 1.70 16 29 H 0.12 3.41 7.64 -2.39 -0.02 3.39 16 30 H 0.09 3.52 8.14 -2.38 -0.02 3.50 16 31 H 0.02 0.81 7.72 -2.39 -0.02 0.79 16 32 H 0.03 1.39 7.24 -2.38 -0.02 1.37 16 33 H 0.08 4.38 5.52 -2.39 -0.01 4.37 16 34 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 35 H 0.33 13.82 7.37 -89.69 -0.66 13.15 16 Total: -1.00 -58.06 265.85 2.24 -55.82 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.40 Total: 20.72 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: 3.03 Total: -22.59 kcal Atomic # 7 Polarization: -79.91 SS G_CDS: -2.21 Total: -82.12 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: -1.00 Total: -17.18 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -58.06 2.24 -55.82 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245762.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.104 kcal (2) G-P(sol) polarization free energy of solvation -58.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds