Wall clock time and date at job start Mon Mar 30 2020 03:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47401 * 2 1 4 4 H 1.08996 * 109.48325 * 304.97784 * 3 2 1 5 5 C 1.53098 * 109.48185 * 184.94003 * 3 2 1 6 6 C 1.53179 * 109.16003 * 182.40750 * 5 3 2 7 7 C 1.50706 * 109.53908 * 176.84914 * 6 5 3 8 8 H 1.07998 * 119.99810 * 115.09755 * 7 6 5 9 9 C 1.37877 * 120.00030 * 295.08923 * 7 6 5 10 10 N 1.31513 * 120.00183 * 202.09444 * 9 7 6 11 11 Si 1.86808 * 119.99849 * 22.09731 * 9 7 6 12 12 H 1.48496 * 109.47177 * 84.46615 * 11 9 7 13 13 H 1.48502 * 109.46648 * 204.46633 * 11 9 7 14 14 H 1.48500 * 109.46982 * 324.46388 * 11 9 7 15 15 C 1.52991 * 109.62076 * 297.06954 * 6 5 3 16 16 N 1.46897 * 109.47482 * 178.47797 * 15 6 5 17 17 C 1.53180 * 109.03733 * 56.98548 * 6 5 3 18 18 C 1.53090 * 109.16292 * 303.01501 * 17 6 5 19 19 O 1.42906 * 109.47906 * 65.00154 * 3 2 1 20 20 H 1.09002 * 109.47281 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47372 * 300.00394 * 1 2 3 22 22 H 1.09004 * 109.47072 * 60.00124 * 1 2 3 23 23 H 1.09008 * 109.47164 * 120.00382 * 2 1 3 24 24 H 1.09007 * 109.47375 * 239.99995 * 2 1 3 25 25 H 1.08997 * 109.52193 * 302.31222 * 5 3 2 26 26 H 1.08999 * 109.51710 * 62.50773 * 5 3 2 27 27 H 0.96997 * 119.99836 * 180.02562 * 10 9 7 28 28 H 1.09003 * 109.47805 * 298.47925 * 15 6 5 29 29 H 1.09003 * 109.47006 * 58.47732 * 15 6 5 30 30 H 1.00901 * 110.99995 * 63.37763 * 16 15 6 31 31 H 1.00901 * 111.00542 * 187.33766 * 16 15 6 32 32 H 1.09001 * 109.52065 * 183.11079 * 17 6 5 33 33 H 1.09004 * 109.52224 * 62.92013 * 17 6 5 34 34 H 1.08998 * 109.48017 * 297.62658 * 18 17 6 35 35 H 1.08990 * 109.48069 * 177.59084 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6058 1.9815 -0.8419 5 6 3.5659 1.4444 -0.1243 6 6 4.0734 2.8884 -0.0630 7 6 5.5798 2.8955 -0.1068 8 1 6.0935 3.3388 -0.9471 9 6 6.3022 2.3362 0.9258 10 7 7.5496 2.7002 1.1284 11 14 5.5090 1.0613 2.0372 12 1 5.6182 -0.2797 1.4089 13 1 6.2016 1.0504 3.3508 14 1 4.0768 1.4000 2.2355 15 6 3.5231 3.6772 -1.2528 16 7 3.9820 5.0703 -1.1711 17 6 3.5958 3.5309 1.2429 18 6 2.0688 3.4483 1.3144 19 8 1.6621 2.0815 1.2211 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 1.8933 -0.5139 -0.8900 25 1 3.9989 0.8711 0.6954 26 1 3.8544 0.9970 -1.0754 27 1 8.0579 2.3064 1.8547 28 1 3.8800 3.2310 -2.1811 29 1 2.4336 3.6519 -1.2329 30 1 4.9870 5.1248 -1.2431 31 1 3.5376 5.6394 -1.8759 32 1 3.9057 4.5756 1.2695 33 1 4.0294 2.9996 2.0902 34 1 1.6351 4.0138 0.4896 35 1 1.7262 3.8656 2.2612 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286544.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:06 Heat of formation + Delta-G solvation = -43.549638 kcal Electronic energy + Delta-G solvation = -15757.230821 eV Core-core repulsion = 13369.310779 eV Total energy + Delta-G solvation = -2387.920042 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.35781 -35.36671 -33.47561 -32.38479 -31.04332 -29.16535 -26.24374 -24.35074 -23.00690 -22.26400 -20.57457 -18.55471 -16.40343 -15.82459 -15.18608 -14.91053 -14.62418 -14.14033 -13.85990 -13.34349 -13.08744 -12.73402 -12.40324 -12.30429 -12.00910 -11.35495 -11.15334 -10.96645 -10.80378 -10.63199 -10.09122 -9.97073 -9.94386 -9.67746 -9.58427 -8.57926 -8.38838 -8.00891 -7.80052 -6.13531 -4.03159 3.33358 3.46125 3.49829 4.42062 4.46605 5.08045 5.28709 5.39090 5.48912 5.54961 5.76666 5.85562 5.94922 5.99808 6.06949 6.17123 6.20872 6.26903 6.31205 6.36247 6.47583 6.54246 6.55829 6.79506 6.83435 7.16111 7.32402 7.52003 7.84865 7.97583 8.02395 8.25512 8.51243 8.92507 9.56589 10.99065 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.015235 C = 0.011820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.860514 B = 1837.482028 C = 2368.341831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C 0.089 3.911 4 H 0.050 0.950 5 C -0.152 4.152 6 C 0.054 3.946 7 C -0.512 4.512 8 H 0.068 0.932 9 C 0.082 3.918 10 N -0.885 5.885 11 Si 0.853 3.147 12 H -0.286 1.286 13 H -0.304 1.304 14 H -0.226 1.226 15 C 0.084 3.916 16 N -0.842 5.842 17 C -0.139 4.139 18 C 0.061 3.939 19 O -0.387 6.387 20 H 0.047 0.953 21 H 0.060 0.940 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.263 0.737 28 H 0.013 0.987 29 H 0.046 0.954 30 H 0.351 0.649 31 H 0.318 0.682 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.043 0.957 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.143 -1.465 -2.755 11.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.031 3.969 4 H 0.068 0.932 5 C -0.190 4.190 6 C 0.052 3.948 7 C -0.549 4.549 8 H 0.086 0.914 9 C -0.122 4.122 10 N -0.521 5.521 11 Si 0.684 3.316 12 H -0.213 1.213 13 H -0.232 1.232 14 H -0.151 1.151 15 C -0.047 4.047 16 N -0.371 5.371 17 C -0.177 4.177 18 C -0.016 4.016 19 O -0.307 6.307 20 H 0.066 0.934 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.084 0.916 24 H 0.089 0.911 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.031 0.969 29 H 0.065 0.935 30 H 0.166 0.834 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.061 0.939 35 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.380 -1.578 -1.776 11.625 hybrid contribution 0.429 -0.846 -0.561 1.102 sum -10.951 -2.424 -2.337 11.456 Atomic orbital electron populations 1.21706 0.95895 1.00755 1.01975 1.21589 0.95977 0.95836 1.02305 1.22180 0.95354 0.92507 0.86815 0.93220 1.22825 0.93496 1.01122 1.01576 1.18431 0.96126 0.89078 0.91135 1.20673 0.88099 1.39260 1.06907 0.91362 1.24930 0.94644 0.96306 0.96288 1.70048 1.10585 1.40582 1.30891 0.87778 0.81626 0.82633 0.79571 1.21349 1.23238 1.15097 1.21728 0.97027 0.88681 0.97257 1.58657 1.13186 1.10107 1.55173 1.22532 0.92886 1.02653 0.99638 1.22652 0.96766 0.82051 1.00113 1.87777 1.78681 1.25475 1.38758 0.93386 0.92101 0.93245 0.91603 0.91056 0.92039 0.92026 0.92768 0.96882 0.93530 0.83447 0.87218 0.90368 0.92130 0.93882 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.81 37.15 0.36 -1.58 16 2 C -0.12 -1.89 5.64 -26.74 -0.15 -2.04 16 3 C 0.09 1.64 2.37 -26.68 -0.06 1.58 16 4 H 0.05 0.86 6.58 -51.93 -0.34 0.52 16 5 C -0.15 -3.25 3.53 -26.59 -0.09 -3.34 16 6 C 0.05 1.20 0.33 -155.48 -0.05 1.15 16 7 C -0.51 -13.71 7.93 -34.44 -0.27 -13.98 16 8 H 0.07 1.96 7.35 -52.49 -0.39 1.58 16 9 C 0.08 2.30 5.22 -17.82 -0.09 2.21 16 10 N -0.89 -26.62 13.96 55.43 0.77 -25.84 16 11 Si 0.85 21.51 23.12 -169.99 -3.93 17.58 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 14 H -0.23 -5.46 4.49 56.52 0.25 -5.21 16 15 C 0.08 1.63 5.13 -3.83 -0.02 1.61 16 16 N -0.84 -15.42 8.67 -10.37 -0.09 -15.51 16 17 C -0.14 -3.08 4.24 -26.59 -0.11 -3.19 16 18 C 0.06 1.15 6.57 37.20 0.24 1.40 16 19 O -0.39 -7.68 9.88 -35.23 -0.35 -8.03 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 24 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 25 H 0.06 1.42 2.49 -51.93 -0.13 1.30 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 28 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.84 5.02 -51.93 -0.26 0.58 16 30 H 0.35 6.96 7.75 -39.29 -0.30 6.66 16 31 H 0.32 4.79 9.08 -39.29 -0.36 4.43 16 32 H 0.08 1.77 7.49 -51.93 -0.39 1.38 16 33 H 0.06 1.45 4.03 -51.93 -0.21 1.24 16 34 H 0.04 0.78 6.63 -51.93 -0.34 0.43 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 254.64 15.07 3.84 3.84 Total: -1.00 -29.37 254.64 -5.37 -34.75 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -5.37 Total: 9.41 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: -0.25 Total: -16.19 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: 0.68 Total: -41.36 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.35 Total: -8.03 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -3.93 Total: 17.58 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.37 -5.37 -34.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286544.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.802 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds