Wall clock time and date at job start Mon Mar 30 2020 03:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46992 * 2 1 4 4 C 1.53000 * 109.47290 * 239.99860 * 2 1 3 5 5 O 1.42905 * 109.46969 * 119.99739 * 2 1 3 6 6 C 1.42898 * 113.99967 * 66.37712 * 5 2 1 7 7 C 1.50697 * 110.62892 * 312.04645 * 6 5 2 8 8 H 1.07996 * 120.00124 * 110.34188 * 7 6 5 9 9 C 1.37883 * 120.00011 * 290.34516 * 7 6 5 10 10 N 1.31513 * 119.99778 * 4.98957 * 9 7 6 11 11 Si 1.86793 * 119.99789 * 184.99237 * 9 7 6 12 12 H 1.48503 * 109.47424 * 60.00085 * 11 9 7 13 13 H 1.48504 * 109.46978 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47572 * 299.99704 * 11 9 7 15 15 C 1.55143 * 110.85464 * 75.25437 * 6 5 2 16 16 C 1.54903 * 101.65090 * 82.79976 * 15 6 5 17 17 N 1.47846 * 104.80073 * 37.06977 * 16 15 6 18 18 C 1.47445 * 108.56216 * 335.90192 * 17 16 15 19 19 H 1.08996 * 109.46801 * 276.22432 * 1 2 3 20 20 H 1.09004 * 109.46784 * 36.22199 * 1 2 3 21 21 H 1.08994 * 109.46664 * 156.22340 * 1 2 3 22 22 H 1.09002 * 109.47355 * 179.97438 * 3 2 1 23 23 H 1.08996 * 109.47244 * 299.99446 * 3 2 1 24 24 H 1.09004 * 109.47651 * 60.00055 * 3 2 1 25 25 H 1.09004 * 109.46765 * 304.52188 * 4 2 1 26 26 H 1.08994 * 109.47170 * 64.52511 * 4 2 1 27 27 H 1.08998 * 109.47092 * 184.52545 * 4 2 1 28 28 H 0.97002 * 119.99711 * 175.00663 * 10 9 7 29 29 H 1.08997 * 110.98928 * 324.70757 * 15 6 5 30 30 H 1.08997 * 110.98965 * 200.89175 * 15 6 5 31 31 H 1.09000 * 110.37315 * 278.23663 * 16 15 6 32 32 H 1.09003 * 110.37334 * 155.89968 * 16 15 6 33 33 H 1.00899 * 110.99942 * 213.63833 * 17 16 15 34 34 H 1.08999 * 109.88591 * 120.39621 * 18 17 16 35 35 H 1.08998 * 109.89151 * 241.58272 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0064 -0.6736 1.1669 6 6 1.7069 -2.0706 1.1945 7 6 0.2582 -2.3098 0.8554 8 1 -0.0071 -2.7773 -0.0813 9 6 -0.7287 -1.9318 1.7411 10 7 -0.4132 -1.2749 2.8358 11 14 -2.5136 -2.3528 1.3859 12 1 -2.6646 -3.8269 1.2884 13 1 -3.3712 -1.8395 2.4842 14 1 -2.9240 -1.7272 0.1032 15 6 2.6332 -2.8532 0.2268 16 6 3.9036 -3.0406 1.0930 17 7 3.3965 -3.2711 2.4625 18 6 2.0521 -2.6754 2.5715 19 1 -0.3633 0.1114 1.0216 20 1 -0.3633 0.8291 -0.6073 21 1 -0.3632 -0.9404 -0.4143 22 1 3.1300 1.4426 0.0005 23 1 1.6768 1.9563 -0.8900 24 1 1.6767 1.9564 0.8900 25 1 1.6121 -1.7229 -1.2906 26 1 1.7445 -0.1628 -2.1373 27 1 3.1270 -0.7920 -1.2096 28 1 -1.1122 -0.9457 3.4223 29 1 2.8517 -2.2659 -0.6650 30 1 2.1962 -3.8158 -0.0389 31 1 4.5196 -2.1418 1.0626 32 1 4.4734 -3.9039 0.7491 33 1 4.0222 -2.8797 3.1504 34 1 1.3254 -3.4453 2.8310 35 1 2.0536 -1.8930 3.3304 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261325218.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:43 Heat of formation + Delta-G solvation = -15.172421 kcal Electronic energy + Delta-G solvation = -16148.485107 eV Core-core repulsion = 13761.795594 eV Total energy + Delta-G solvation = -2386.689513 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.89162 -35.80082 -32.81667 -31.71866 -29.35844 -27.60697 -26.30332 -26.23002 -23.87182 -20.32997 -19.78206 -18.76515 -16.51106 -15.58231 -14.86891 -14.43768 -13.98019 -13.79398 -13.33389 -12.46450 -12.34134 -12.20007 -11.92915 -11.53769 -11.23294 -11.18014 -10.98501 -10.73636 -10.64175 -10.48878 -10.40692 -10.27161 -9.80094 -9.47064 -9.14196 -8.74719 -8.21532 -7.89222 -7.48390 -6.06244 -4.08564 3.25522 3.31367 3.34418 4.33377 4.99374 5.27927 5.36634 5.81737 5.86676 5.89709 6.05301 6.14811 6.22856 6.29371 6.40884 6.48084 6.54193 6.67748 6.76220 6.80371 6.96550 7.00716 7.05876 7.12897 7.34025 7.43787 7.69493 7.81674 7.82669 7.98323 8.19131 8.32012 8.79180 9.08161 9.48596 10.95915 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.025581 B = 0.017205 C = 0.012653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.281892 B = 1627.045970 C = 2212.420955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.135 3.865 3 C -0.135 4.135 4 C -0.178 4.178 5 O -0.374 6.374 6 C 0.229 3.771 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.082 3.918 10 N -0.859 5.859 11 Si 0.878 3.122 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.185 4.185 16 C 0.050 3.950 17 N -0.697 5.697 18 C 0.085 3.915 19 H 0.082 0.918 20 H 0.003 0.997 21 H 0.083 0.917 22 H 0.046 0.954 23 H 0.053 0.947 24 H 0.055 0.945 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.048 0.952 28 H 0.262 0.738 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.321 0.679 34 H 0.075 0.925 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.712 1.476 -4.339 5.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.095 3.905 3 C -0.192 4.192 4 C -0.234 4.234 5 O -0.294 6.294 6 C 0.190 3.810 7 C -0.574 4.574 8 H 0.077 0.923 9 C -0.123 4.123 10 N -0.496 5.496 11 Si 0.705 3.295 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.223 4.223 16 C -0.080 4.080 17 N -0.325 5.325 18 C -0.043 4.043 19 H 0.101 0.899 20 H 0.022 0.978 21 H 0.101 0.899 22 H 0.065 0.935 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.098 0.902 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.134 0.866 34 H 0.093 0.907 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.513 0.924 -4.086 5.467 hybrid contribution -0.954 0.660 -0.297 1.198 sum 2.560 1.584 -4.383 5.317 Atomic orbital electron populations 1.22922 0.95460 1.00000 1.03601 1.20765 0.94099 0.90221 0.85447 1.21785 1.00207 0.96240 1.00997 1.22928 0.99819 1.02327 0.98367 1.87829 1.78317 1.22976 1.40285 1.20003 0.92142 0.78297 0.90553 1.21129 0.90619 1.41667 1.03941 0.92312 1.24928 0.98444 0.94179 0.94717 1.70014 1.32817 1.34647 1.12107 0.86910 0.85322 0.79132 0.78174 1.20037 1.21167 1.19897 1.24217 0.96154 1.01695 1.00217 1.22697 0.97281 0.97688 0.90298 1.62113 1.05314 1.61062 1.04018 1.22426 0.87225 0.96632 0.98001 0.89947 0.97762 0.89864 0.93512 0.92830 0.92610 0.90173 0.94051 0.93314 0.92751 0.88946 0.91713 0.95208 0.92671 0.86585 0.90657 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 6.89 37.16 0.26 -3.43 16 2 C 0.13 2.88 1.11 -90.62 -0.10 2.78 16 3 C -0.13 -2.49 8.72 37.16 0.32 -2.17 16 4 C -0.18 -3.34 6.60 37.16 0.25 -3.10 16 5 O -0.37 -9.14 9.66 -35.23 -0.34 -9.48 16 6 C 0.23 5.49 0.35 -89.95 -0.03 5.46 16 7 C -0.54 -13.57 3.85 -34.44 -0.13 -13.70 16 8 H 0.06 1.49 7.23 -52.49 -0.38 1.12 16 9 C 0.08 2.11 2.81 -17.82 -0.05 2.06 16 10 N -0.86 -23.06 11.07 55.43 0.61 -22.45 16 11 Si 0.88 20.22 29.15 -169.99 -4.95 15.27 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 14 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 15 C -0.19 -3.92 5.09 -24.59 -0.13 -4.04 16 16 C 0.05 0.97 7.56 -2.30 -0.02 0.96 16 17 N -0.70 -14.62 7.39 -110.79 -0.82 -15.44 16 18 C 0.09 2.07 5.67 -2.84 -0.02 2.05 16 19 H 0.08 2.09 5.51 -51.93 -0.29 1.81 16 20 H 0.00 0.07 7.91 -51.93 -0.41 -0.34 16 21 H 0.08 1.96 4.68 -51.93 -0.24 1.72 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.05 0.86 8.12 -51.93 -0.42 0.44 16 24 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.08 1.60 4.80 -51.93 -0.25 1.35 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.87 7.08 -51.93 -0.37 0.50 16 28 H 0.26 6.84 8.32 -40.82 -0.34 6.51 16 29 H 0.09 1.82 3.30 -51.93 -0.17 1.65 16 30 H 0.06 1.39 8.04 -51.93 -0.42 0.98 16 31 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.32 6.09 8.91 -39.29 -0.35 5.74 16 34 H 0.08 1.98 7.71 -51.93 -0.40 1.58 16 35 H 0.06 1.44 7.80 -51.93 -0.41 1.04 16 LS Contribution 257.34 15.07 3.88 3.88 Total: -1.00 -26.66 257.34 -6.62 -33.28 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -5.35 Total: 8.07 kcal Atomic # 6 Polarization: -13.48 SS G_CDS: 0.35 Total: -13.13 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: -0.21 Total: -37.89 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: -0.34 Total: -9.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.95 Total: 15.27 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -26.66 -6.62 -33.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261325218.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.110 kcal (2) G-P(sol) polarization free energy of solvation -26.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds