Wall clock time and date at job start Mon Mar 30 2020 03:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47129 * 2 1 4 4 H 1.09000 * 109.46887 * 305.00322 * 3 2 1 5 5 C 1.50700 * 109.47001 * 185.00053 * 3 2 1 6 6 H 1.08005 * 119.99657 * 245.30414 * 5 3 2 7 7 C 1.37870 * 119.99988 * 65.30475 * 5 3 2 8 8 N 1.31509 * 120.00150 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 120.00066 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46961 * 89.99838 * 9 7 5 11 11 H 1.48496 * 109.47013 * 210.00318 * 9 7 5 12 12 H 1.48503 * 109.46886 * 330.00048 * 9 7 5 13 13 N 1.46900 * 109.47185 * 65.00064 * 3 2 1 14 14 C 1.48563 * 111.00108 * 65.56765 * 13 3 2 15 15 C 1.54383 * 104.59440 * 159.04047 * 14 13 3 16 16 H 1.08996 * 110.40689 * 95.09225 * 15 14 13 17 17 O 1.42900 * 110.32045 * 217.25378 * 15 14 13 18 18 C 1.54263 * 105.05971 * 336.14986 * 15 14 13 19 19 C 1.48559 * 111.00365 * 180.98941 * 13 3 2 20 20 H 1.09000 * 110.40889 * 319.74230 * 19 13 3 21 21 C 1.53005 * 110.51126 * 82.12957 * 19 13 3 22 22 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47426 * 299.99608 * 1 2 3 24 24 H 1.08996 * 109.47488 * 60.00149 * 1 2 3 25 25 H 1.08998 * 109.46808 * 239.99975 * 2 1 3 26 26 H 1.08996 * 109.46923 * 120.00363 * 2 1 3 27 27 H 0.97007 * 120.00121 * 180.02562 * 8 7 5 28 28 H 1.08998 * 110.40881 * 40.26394 * 14 13 3 29 29 H 1.08998 * 110.41413 * 277.82162 * 14 13 3 30 30 H 0.96693 * 114.00322 * 295.63386 * 17 15 14 31 31 H 1.09007 * 110.32165 * 118.89505 * 18 15 14 32 32 H 1.09001 * 110.32219 * 241.00107 * 18 15 14 33 33 H 1.08998 * 109.47092 * 176.69248 * 21 19 13 34 34 H 1.09005 * 109.46995 * 296.68626 * 21 19 13 35 35 H 1.08998 * 109.47312 * 56.68538 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1504 1.8108 0.6897 7 6 4.1392 0.9779 -1.2757 8 7 3.3982 0.5321 -2.2665 9 14 6.0009 0.9808 -1.4295 10 1 6.5412 -0.3068 -0.9242 11 1 6.3795 1.1512 -2.8552 12 1 6.5618 2.1003 -0.6312 13 7 1.6514 2.0992 1.2552 14 6 2.3331 1.4728 2.4171 15 6 2.2769 2.5456 3.5259 16 1 1.4171 2.3774 4.1743 17 8 3.4841 2.5328 4.2904 18 6 2.1302 3.8871 2.7785 19 6 2.1100 3.5120 1.2812 20 1 3.1098 3.5950 0.8550 21 6 1.1307 4.4077 0.5198 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.8185 0.2036 -3.0767 28 1 3.3678 1.2366 2.1688 29 1 1.8018 0.5741 2.7304 30 1 3.6295 1.7131 4.7822 31 1 1.1974 4.3766 3.0588 32 1 2.9781 4.5365 2.9963 33 1 1.4513 5.4464 0.5991 34 1 1.1094 4.1131 -0.5295 35 1 0.1336 4.3015 0.9472 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306514468.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:45 Heat of formation + Delta-G solvation = -56.640187 kcal Electronic energy + Delta-G solvation = -15439.508221 eV Core-core repulsion = 13051.020530 eV Total energy + Delta-G solvation = -2388.487691 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.86438 -35.89798 -33.73294 -31.68223 -30.00704 -29.10490 -26.12157 -24.72553 -22.97436 -21.04739 -19.42777 -18.92137 -17.22601 -16.16412 -15.35152 -14.44398 -13.98752 -13.72552 -13.33064 -12.98982 -12.93482 -12.34393 -12.04007 -11.68464 -11.33889 -11.25845 -11.00257 -10.82536 -10.71708 -10.50334 -10.41716 -10.06190 -9.85190 -9.69849 -9.48565 -9.35976 -9.09820 -8.37168 -7.24340 -6.01068 -4.11873 3.26849 3.34279 3.38196 4.40073 4.55920 5.21930 5.24724 5.27387 5.38871 5.57596 5.95753 6.08596 6.20452 6.26931 6.33110 6.38412 6.44395 6.48954 6.53951 6.65510 6.78026 6.86204 6.99525 7.05004 7.15163 7.30041 7.56511 7.71444 7.92827 7.99184 8.12399 8.21106 8.41220 8.98587 9.54977 11.00689 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.024154 B = 0.012573 C = 0.010638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.946059 B = 2226.409683 C = 2631.324794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.203 3.797 4 H 0.045 0.955 5 C -0.544 4.544 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.275 1.275 13 N -0.501 5.501 14 C 0.004 3.996 15 C 0.094 3.906 16 H 0.054 0.946 17 O -0.570 6.570 18 C -0.113 4.113 19 C 0.060 3.940 20 H 0.068 0.932 21 C -0.129 4.129 22 H 0.025 0.975 23 H 0.048 0.952 24 H 0.040 0.960 25 H 0.081 0.919 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.372 0.628 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 2.638 7.695 8.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C 0.096 3.904 4 H 0.063 0.937 5 C -0.583 4.583 6 H 0.078 0.922 7 C -0.133 4.133 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.226 5.226 14 C -0.124 4.124 15 C 0.035 3.965 16 H 0.072 0.928 17 O -0.375 6.375 18 C -0.151 4.151 19 C -0.048 4.048 20 H 0.086 0.914 21 C -0.187 4.187 22 H 0.044 0.956 23 H 0.067 0.933 24 H 0.059 0.941 25 H 0.100 0.900 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.218 0.782 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.745 3.122 7.262 8.747 hybrid contribution 1.907 -0.696 -0.102 2.032 sum -1.839 2.427 7.160 7.780 Atomic orbital electron populations 1.21714 0.98719 0.98452 1.00724 1.21507 0.92387 0.99213 1.01238 1.19402 0.93233 0.91128 0.86657 0.93707 1.21720 0.92771 1.42527 1.01293 0.92227 1.24902 0.97741 0.94982 0.95705 1.69915 1.34827 1.41933 1.05626 0.86706 0.86327 0.78441 0.77244 1.20706 1.21209 1.19956 1.65705 1.51740 1.00895 1.04273 1.23690 1.00346 0.96506 0.91902 1.22646 0.85489 0.96626 0.91701 0.92796 1.86522 1.43211 1.42193 1.65552 1.22373 1.01394 0.95805 0.95495 1.22496 0.98664 0.90679 0.93008 0.91394 1.21634 0.98824 0.97475 1.00768 0.95597 0.93306 0.94082 0.90010 0.95055 0.92913 0.91053 0.91718 0.78170 0.91261 0.91250 0.93573 0.92428 0.92945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.80 37.16 0.36 -2.44 16 2 C -0.10 -2.46 5.23 -26.73 -0.14 -2.60 16 3 C 0.20 4.94 1.64 -68.87 -0.11 4.83 16 4 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 5 C -0.54 -14.44 6.45 -34.44 -0.22 -14.66 16 6 H 0.06 1.62 5.67 -52.48 -0.30 1.32 16 7 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 8 N -0.88 -24.86 11.71 55.43 0.65 -24.21 16 9 Si 0.88 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.50 -10.52 4.53 -215.62 -0.98 -11.50 16 14 C 0.00 0.09 5.08 -2.18 -0.01 0.07 16 15 C 0.09 1.58 4.42 -25.35 -0.11 1.47 16 16 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 17 O -0.57 -9.24 13.26 -35.23 -0.47 -9.70 16 18 C -0.11 -1.92 6.36 -25.35 -0.16 -2.08 16 19 C 0.06 1.19 2.69 -66.07 -0.18 1.01 16 20 H 0.07 1.54 6.42 -51.93 -0.33 1.21 16 21 C -0.13 -2.26 9.33 37.16 0.35 -1.92 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.95 7.75 -51.93 -0.40 0.55 16 24 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.08 2.15 6.41 -51.93 -0.33 1.81 16 26 H 0.03 0.71 6.87 -51.93 -0.36 0.36 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.07 1.57 5.65 -51.93 -0.29 1.28 16 29 H 0.06 1.20 7.59 -51.93 -0.39 0.80 16 30 H 0.37 4.36 9.12 45.56 0.42 4.78 16 31 H 0.07 1.05 7.86 -51.93 -0.41 0.64 16 32 H 0.07 1.18 7.98 -51.93 -0.41 0.77 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 1.10 7.48 -51.93 -0.39 0.71 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 271.91 15.07 4.10 4.10 Total: -1.00 -28.40 271.91 -6.88 -35.28 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -4.84 Total: 4.38 kcal Atomic # 6 Polarization: -14.21 SS G_CDS: -0.32 Total: -14.53 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: -0.33 Total: -35.71 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.47 Total: -9.70 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.40 -6.88 -35.28 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306514468.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.361 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds