Wall clock time and date at job start Mon Mar 30 2020 03:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47205 * 2 1 4 4 H 1.08990 * 109.46986 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.46528 * 59.95150 * 3 2 1 6 6 H 1.07999 * 119.99954 * 245.19886 * 5 3 2 7 7 C 1.37872 * 120.00009 * 65.21147 * 5 3 2 8 8 N 1.31514 * 120.00302 * 7.90564 * 7 5 3 9 9 Si 1.86807 * 120.00005 * 187.90547 * 7 5 3 10 10 H 1.48501 * 109.46640 * 59.99753 * 9 7 5 11 11 H 1.48496 * 109.46983 * 300.00079 * 9 7 5 12 12 H 1.48501 * 109.46939 * 179.97438 * 9 7 5 13 13 N 1.46896 * 109.47033 * 299.95683 * 3 2 1 14 14 C 1.47856 * 110.99650 * 314.55217 * 13 3 2 15 15 C 1.54909 * 104.79319 * 213.63707 * 14 13 3 16 16 H 1.08997 * 110.99368 * 278.98153 * 15 14 13 17 17 O 1.42900 * 111.01946 * 155.17812 * 15 14 13 18 18 C 1.55144 * 101.65340 * 37.07108 * 15 14 13 19 19 C 1.47440 * 110.99716 * 193.71335 * 13 3 2 20 20 H 1.09000 * 109.88621 * 242.65604 * 19 13 3 21 21 C 1.52997 * 109.89200 * 3.84752 * 19 13 3 22 22 H 1.08999 * 109.47012 * 304.24560 * 1 2 3 23 23 H 1.09000 * 109.46722 * 64.24992 * 1 2 3 24 24 H 1.08997 * 109.46896 * 184.24826 * 1 2 3 25 25 H 1.08996 * 109.47346 * 239.99669 * 2 1 3 26 26 H 1.09000 * 109.47155 * 119.99769 * 2 1 3 27 27 H 0.97005 * 119.99716 * 5.42524 * 8 7 5 28 28 H 1.08995 * 110.37376 * 332.46875 * 14 13 3 29 29 H 1.09001 * 110.36799 * 94.81174 * 14 13 3 30 30 H 0.96695 * 113.99887 * 67.71467 * 17 15 14 31 31 H 1.08998 * 110.70491 * 205.96015 * 18 15 14 32 32 H 1.08999 * 110.85139 * 82.79450 * 18 15 14 33 33 H 1.08995 * 109.46938 * 56.37774 * 21 19 13 34 34 H 1.09002 * 109.47085 * 176.37805 * 21 19 13 35 35 H 1.08998 * 109.46791 * 296.37890 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 3.1300 1.4425 0.0005 5 6 1.5367 2.1532 1.2299 6 1 0.8484 2.9798 1.1323 7 6 1.9550 1.7483 2.4797 8 7 2.9078 0.8493 2.5951 9 14 1.1682 2.4769 4.0094 10 1 -0.2874 2.1825 4.0053 11 1 1.3758 3.9472 4.0205 12 1 1.7902 1.8794 5.2183 13 7 1.5513 2.1347 -1.1999 14 6 1.7222 1.2932 -2.4036 15 6 2.0222 2.2944 -3.5469 16 1 1.1032 2.7426 -3.9246 17 8 2.7523 1.6644 -4.6015 18 6 2.8963 3.3491 -2.8185 19 6 2.2721 3.4039 -1.4082 20 1 1.5765 4.2405 -1.3430 21 6 3.3735 3.5556 -0.3571 22 1 -0.3633 0.5783 0.8495 23 1 -0.3633 0.4465 -0.9256 24 1 -0.3633 -1.0248 0.0761 25 1 1.8934 -0.5139 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.3706 0.5290 1.8050 28 1 2.5584 0.6068 -2.2710 29 1 0.8062 0.7408 -2.6134 30 1 2.2469 0.9973 -5.0857 31 1 2.8213 4.3184 -3.3112 32 1 3.9353 3.0235 -2.7677 33 1 4.0383 2.6929 -0.4004 34 1 3.9430 4.4635 -0.5560 35 1 2.9238 3.6185 0.6338 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306514470.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:47 Heat of formation + Delta-G solvation = -65.079104 kcal Electronic energy + Delta-G solvation = -15582.136046 eV Core-core repulsion = 13193.282417 eV Total energy + Delta-G solvation = -2388.853629 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.85427 -37.69789 -35.74996 -33.62751 -31.53992 -30.65825 -27.33991 -26.25573 -25.50678 -22.70776 -21.65771 -20.33438 -18.42316 -18.23298 -17.57429 -16.09023 -15.69776 -15.54458 -15.19821 -14.84201 -14.35137 -14.10018 -13.58528 -13.37483 -13.23547 -13.12764 -12.84369 -12.52541 -12.24842 -11.95975 -11.91528 -11.87286 -11.71966 -11.41746 -11.30237 -10.87894 -10.49159 -10.38712 -8.91628 -8.44178 -6.10396 1.56691 1.62676 1.81196 2.61506 2.99370 3.28992 3.62818 3.68367 3.73338 4.07812 4.25779 4.40949 4.46639 4.54595 4.58510 4.67280 4.69013 4.83918 4.85254 4.95659 5.01835 5.09986 5.24083 5.25828 5.37794 5.49273 5.64014 5.68337 6.05564 6.19379 6.46584 6.59999 6.80530 6.86437 7.59386 8.89847 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.040532 B = 0.010524 C = 0.009309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.651750 B = 2659.839433 C = 3006.969442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.118 4.118 3 C 0.198 3.802 4 H -0.023 1.023 5 C -0.552 4.552 6 H 0.045 0.955 7 C -0.027 4.027 8 N -0.940 5.940 9 Si 1.100 2.900 10 H -0.275 1.275 11 H -0.274 1.274 12 H -0.291 1.291 13 N -0.515 5.515 14 C 0.012 3.988 15 C 0.102 3.898 16 H 0.091 0.909 17 O -0.575 6.575 18 C -0.126 4.126 19 C 0.080 3.920 20 H 0.081 0.919 21 C -0.160 4.160 22 H 0.041 0.959 23 H 0.057 0.943 24 H 0.040 0.960 25 H 0.037 0.963 26 H 0.034 0.966 27 H 0.255 0.745 28 H 0.026 0.974 29 H 0.084 0.916 30 H 0.396 0.604 31 H 0.095 0.905 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.058 0.942 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.349 2.799 -10.556 11.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.156 4.156 3 C 0.091 3.909 4 H -0.005 1.005 5 C -0.590 4.590 6 H 0.063 0.937 7 C -0.225 4.225 8 N -0.578 5.578 9 Si 0.925 3.075 10 H -0.201 1.201 11 H -0.199 1.199 12 H -0.217 1.217 13 N -0.241 5.241 14 C -0.116 4.116 15 C 0.042 3.958 16 H 0.109 0.891 17 O -0.383 6.383 18 C -0.164 4.164 19 C -0.028 4.028 20 H 0.099 0.901 21 C -0.218 4.218 22 H 0.060 0.940 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.065 0.935 28 H 0.045 0.955 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.077 0.923 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.435 3.207 -8.623 9.820 hybrid contribution 0.822 -0.783 -1.602 1.963 sum -2.614 2.424 -10.225 10.829 Atomic orbital electron populations 1.21381 0.94731 0.99099 1.01622 1.21643 0.97761 0.97922 0.98317 1.19517 0.91673 0.90924 0.88795 1.00537 1.21819 1.28006 1.17437 0.91783 0.93713 1.26790 0.96070 0.95732 1.03926 1.70896 1.23211 1.30861 1.32854 0.83133 0.75699 0.75801 0.72912 1.20083 1.19935 1.21749 1.63730 1.54527 1.03830 1.01988 1.23725 1.00063 0.96461 0.91370 1.22895 0.94568 0.92179 0.86116 0.89132 1.86444 1.44503 1.58842 1.48489 1.22834 0.98976 0.99804 0.94822 1.22204 0.93804 0.93736 0.93046 0.90092 1.22305 0.98290 0.99312 1.01889 0.94012 0.92400 0.94104 0.94430 0.94741 0.93470 0.95521 0.89805 0.75371 0.88612 0.92419 0.95627 0.92315 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.62 9.48 71.98 0.68 -3.94 16 2 C -0.12 -5.46 4.95 30.60 0.15 -5.31 16 3 C 0.20 9.61 0.88 44.17 0.04 9.65 16 4 H -0.02 -1.23 4.80 -2.39 -0.01 -1.24 16 5 C -0.55 -29.18 4.47 25.60 0.11 -29.06 16 6 H 0.04 2.42 7.83 -2.91 -0.02 2.40 16 7 C -0.03 -1.50 5.23 84.65 0.44 -1.05 16 8 N -0.94 -55.82 12.84 21.45 0.28 -55.54 16 9 Si 1.10 49.76 29.91 68.60 2.05 51.82 16 10 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 13 N -0.52 -21.08 4.45 -839.86 -3.73 -24.81 16 14 C 0.01 0.42 4.76 86.77 0.41 0.84 16 15 C 0.10 2.88 4.42 31.98 0.14 3.02 16 16 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 17 O -0.58 -14.94 13.47 -148.98 -2.01 -16.95 16 18 C -0.13 -3.90 6.21 31.78 0.20 -3.70 16 19 C 0.08 2.99 3.82 45.26 0.17 3.16 16 20 H 0.08 2.90 8.14 -2.39 -0.02 2.89 16 21 C -0.16 -6.65 7.74 71.98 0.56 -6.09 16 22 H 0.04 1.92 7.07 -2.39 -0.02 1.90 16 23 H 0.06 2.21 6.48 -2.39 -0.02 2.19 16 24 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.59 6.29 -2.39 -0.02 1.58 16 26 H 0.03 1.79 6.43 -2.39 -0.02 1.78 16 27 H 0.26 15.46 6.24 -92.70 -0.58 14.88 16 28 H 0.03 1.02 6.79 -2.39 -0.02 1.00 16 29 H 0.08 2.63 7.11 -2.39 -0.02 2.61 16 30 H 0.40 6.41 9.12 -74.06 -0.68 5.74 16 31 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 1.95 7.85 -2.39 -0.02 1.93 16 33 H 0.02 1.15 6.30 -2.39 -0.02 1.13 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.07 3.53 5.38 -2.39 -0.01 3.51 16 Total: -1.00 -62.34 262.34 0.09 -62.25 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.59 Total: 15.73 kcal Atomic # 6 Polarization: -35.40 SS G_CDS: 2.91 Total: -32.48 kcal Atomic # 7 Polarization: -76.90 SS G_CDS: -3.46 Total: -80.36 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -2.01 Total: -16.95 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.05 Total: 51.82 kcal Total: -62.34 0.09 -62.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306514470.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.833 kcal (2) G-P(sol) polarization free energy of solvation -62.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds