Wall clock time and date at job start Mon Mar 30 2020 02:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42909 * 109.46923 * 2 1 4 4 C 1.50701 * 109.47370 * 240.00286 * 2 1 3 5 5 H 1.07997 * 119.99453 * 234.14169 * 4 2 1 6 6 C 1.37877 * 120.00049 * 54.14498 * 4 2 1 7 7 N 1.31509 * 119.99908 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99922 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47050 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47242 * 119.99779 * 8 6 4 11 11 H 1.48497 * 109.46856 * 240.00096 * 8 6 4 12 12 C 1.52996 * 109.47190 * 119.99848 * 2 1 3 13 13 C 1.53002 * 109.47096 * 50.54267 * 12 2 1 14 14 H 1.08999 * 109.46083 * 303.87309 * 13 12 2 15 15 C 1.53033 * 109.46343 * 183.90108 * 13 12 2 16 16 C 1.53122 * 109.27936 * 180.80795 * 15 13 12 17 17 C 1.53120 * 109.16098 * 57.65186 * 16 15 13 18 18 C 1.53039 * 109.27999 * 302.34761 * 17 16 15 19 19 N 1.46848 * 109.45998 * 63.84964 * 13 12 2 20 20 H 1.09005 * 109.46612 * 172.56082 * 1 2 3 21 21 H 1.09004 * 109.47314 * 52.56938 * 1 2 3 22 22 H 1.08995 * 109.47379 * 292.56186 * 1 2 3 23 23 H 0.96692 * 114.00150 * 179.97438 * 3 2 1 24 24 H 0.97005 * 119.99908 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47599 * 170.54419 * 12 2 1 26 26 H 1.09006 * 109.47309 * 290.54662 * 12 2 1 27 27 H 1.09002 * 109.50529 * 300.74523 * 15 13 12 28 28 H 1.08992 * 109.50452 * 60.86633 * 15 13 12 29 29 H 1.09003 * 109.52289 * 297.75162 * 16 15 13 30 30 H 1.08999 * 109.57580 * 177.59385 * 16 15 13 31 31 H 1.08996 * 109.50358 * 182.40463 * 17 16 15 32 32 H 1.09003 * 109.53088 * 62.30937 * 17 16 15 33 33 H 1.08989 * 109.46252 * 299.16567 * 18 17 16 34 34 H 1.08997 * 109.45554 * 179.18663 * 18 17 16 35 35 H 1.00906 * 111.00232 * 305.85570 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.7289 -1.5300 -1.1341 6 6 1.6028 -0.3137 -2.4792 7 7 0.7543 0.6841 -2.5963 8 14 2.2250 -1.1947 -4.0043 9 1 3.1633 -2.2740 -3.6044 10 1 1.0767 -1.7836 -4.7390 11 1 2.9303 -0.2265 -4.8821 12 6 2.0400 -0.7212 1.2492 13 6 1.3457 -2.0789 1.3734 14 1 0.2654 -1.9347 1.3846 15 6 1.7828 -2.7581 2.6733 16 6 1.1013 -4.1249 2.7835 17 6 1.4630 -4.9672 1.5570 18 6 1.0352 -4.2240 0.2895 19 7 1.7148 -2.9235 0.2302 20 1 -0.3633 -1.0191 -0.1331 21 1 -0.3634 0.6246 -0.8161 22 1 -0.3634 0.3943 0.9490 23 1 2.9702 1.4238 0.0004 24 1 0.4518 0.9629 -3.4748 25 1 3.1168 -0.8698 1.1689 26 1 1.8211 -0.1192 2.1312 27 1 2.8647 -2.8904 2.6688 28 1 1.4948 -2.1384 3.5223 29 1 0.0204 -3.9905 2.8271 30 1 1.4421 -4.6312 3.6866 31 1 0.9466 -5.9257 1.6087 32 1 2.5399 -5.1348 1.5348 33 1 -0.0436 -4.0696 0.3057 34 1 1.3045 -4.8147 -0.5861 35 1 1.5230 -2.4548 -0.6425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307328640.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:47 Heat of formation + Delta-G solvation = -77.827561 kcal Electronic energy + Delta-G solvation = -15539.524921 eV Core-core repulsion = 13150.118477 eV Total energy + Delta-G solvation = -2389.406444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.11043 -37.83320 -34.40923 -33.70231 -32.50483 -30.49585 -27.46495 -27.29868 -24.16912 -23.00505 -20.96109 -20.27824 -19.10868 -17.13698 -16.58195 -16.51233 -15.81151 -15.19027 -15.04189 -14.43286 -14.41519 -13.97053 -13.63695 -13.32783 -13.07307 -12.85703 -12.67293 -12.64593 -12.36188 -12.17127 -11.85884 -11.77437 -11.56306 -11.28298 -11.11669 -10.59549 -10.37575 -9.99446 -9.02412 -8.00171 -6.24178 1.40525 1.45924 1.56224 2.43057 3.13438 3.63118 3.96618 4.08456 4.16374 4.25293 4.35574 4.55676 4.63413 4.68912 4.77785 4.93434 4.93815 5.01605 5.06437 5.08814 5.14707 5.22159 5.30998 5.34218 5.44007 5.59099 5.64442 5.78792 6.11934 6.32633 6.55849 6.84430 6.96274 7.42954 7.65421 8.96258 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031235 B = 0.012072 C = 0.009632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.227729 B = 2318.918816 C = 2906.282112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.231 3.769 3 O -0.589 6.589 4 C -0.559 4.559 5 H 0.083 0.917 6 C 0.035 3.965 7 N -0.889 5.889 8 Si 0.943 3.057 9 H -0.262 1.262 10 H -0.284 1.284 11 H -0.287 1.287 12 C -0.121 4.121 13 C 0.104 3.896 14 H 0.018 0.982 15 C -0.111 4.111 16 C -0.116 4.116 17 C -0.110 4.110 18 C 0.047 3.953 19 N -0.707 5.707 20 H 0.037 0.963 21 H 0.064 0.936 22 H 0.018 0.982 23 H 0.358 0.642 24 H 0.257 0.743 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.067 0.933 35 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -8.859 7.293 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.193 3.807 3 O -0.394 6.394 4 C -0.597 4.597 5 H 0.101 0.899 6 C -0.168 4.168 7 N -0.526 5.526 8 Si 0.769 3.231 9 H -0.186 1.186 10 H -0.210 1.210 11 H -0.213 1.213 12 C -0.160 4.160 13 C -0.006 4.006 14 H 0.036 0.964 15 C -0.149 4.149 16 C -0.153 4.153 17 C -0.148 4.148 18 C -0.083 4.083 19 N -0.352 5.352 20 H 0.056 0.944 21 H 0.083 0.917 22 H 0.037 0.963 23 H 0.203 0.797 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.031 0.969 34 H 0.086 0.914 35 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 0.846 -8.848 7.424 11.581 hybrid contribution -0.197 0.095 -1.354 1.371 sum 0.649 -8.753 6.070 10.672 Atomic orbital electron populations 1.21580 0.96969 0.99575 0.99141 1.18956 0.91190 0.79255 0.91326 1.86452 1.24797 1.30827 1.97334 1.22121 1.28151 1.17836 0.91595 0.89905 1.25772 0.94443 0.94910 1.01721 1.70137 1.31787 1.27225 1.23466 0.85755 0.78355 0.78899 0.80096 1.18568 1.20980 1.21306 1.22174 0.99992 0.95659 0.98135 1.21221 0.95687 0.91968 0.91757 0.96399 1.21651 1.00757 0.96602 0.95869 1.21552 0.99870 0.95421 0.98484 1.21564 1.01598 0.98067 0.93596 1.21997 0.95116 0.92143 0.99039 1.61200 1.61173 1.04775 1.08045 0.94393 0.91729 0.96314 0.79668 0.93390 0.92746 0.93041 0.91924 0.91466 0.92724 0.90207 0.90359 0.91781 0.96876 0.91418 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 7.48 71.98 0.54 -5.18 16 2 C 0.23 11.24 0.77 -11.54 -0.01 11.23 16 3 O -0.59 -30.07 12.70 -148.98 -1.89 -31.96 16 4 C -0.56 -28.44 5.61 25.60 0.14 -28.30 16 5 H 0.08 4.19 6.06 -2.91 -0.02 4.17 16 6 C 0.03 1.82 5.25 84.66 0.44 2.27 16 7 N -0.89 -50.18 10.79 21.45 0.23 -49.95 16 8 Si 0.94 42.01 29.54 68.60 2.03 44.03 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 12 C -0.12 -4.99 4.42 30.59 0.14 -4.85 16 13 C 0.10 3.88 2.03 44.94 0.09 3.97 16 14 H 0.02 0.73 6.24 -2.39 -0.01 0.71 16 15 C -0.11 -3.31 5.37 30.65 0.16 -3.15 16 16 C -0.12 -2.92 6.00 30.68 0.18 -2.74 16 17 C -0.11 -2.88 6.09 30.65 0.19 -2.69 16 18 C 0.05 1.52 6.55 86.33 0.57 2.08 16 19 N -0.71 -27.52 5.75 -491.69 -2.83 -30.35 16 20 H 0.04 1.81 6.70 -2.38 -0.02 1.79 16 21 H 0.06 3.60 5.94 -2.38 -0.01 3.59 16 22 H 0.02 0.84 8.13 -2.39 -0.02 0.82 16 23 H 0.36 16.05 9.04 -74.06 -0.67 15.38 16 24 H 0.26 13.93 8.31 -92.70 -0.77 13.16 16 25 H 0.05 2.24 8.11 -2.39 -0.02 2.22 16 26 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.37 16.30 4.55 -89.69 -0.41 15.90 16 Total: -1.00 -57.92 266.03 -0.02 -57.94 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.00 Total: 37.64 kcal Atomic # 6 Polarization: -29.80 SS G_CDS: 2.44 Total: -27.35 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -2.60 Total: -80.30 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.89 Total: -31.96 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -57.92 -0.02 -57.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328640.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.888 kcal (2) G-P(sol) polarization free energy of solvation -57.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds