Wall clock time and date at job start Mon Mar 30 2020 02:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46881 * 2 1 4 4 C 1.50700 * 109.47164 * 119.99960 * 2 1 3 5 5 H 1.07996 * 119.99730 * 114.64883 * 4 2 1 6 6 C 1.37882 * 119.99820 * 294.64875 * 4 2 1 7 7 N 1.31510 * 119.99601 * 162.94042 * 6 4 2 8 8 Si 1.86794 * 120.00103 * 342.94642 * 6 4 2 9 9 H 1.48502 * 109.47266 * 179.97438 * 8 6 4 10 10 H 1.48508 * 109.47258 * 299.99829 * 8 6 4 11 11 H 1.48499 * 109.47621 * 59.99449 * 8 6 4 12 12 C 1.53002 * 109.46927 * 240.00155 * 2 1 3 13 13 C 1.53000 * 109.47253 * 59.99960 * 12 2 1 14 14 H 1.08997 * 109.45978 * 304.99637 * 13 12 2 15 15 C 1.53035 * 109.45981 * 185.01737 * 13 12 2 16 16 C 1.53113 * 109.27744 * 180.79289 * 15 13 12 17 17 C 1.53116 * 109.15257 * 57.67541 * 16 15 13 18 18 C 1.53039 * 109.27559 * 302.33678 * 17 16 15 19 19 N 1.46846 * 109.52254 * 59.18326 * 18 17 16 20 20 H 1.08994 * 109.47265 * 293.55093 * 1 2 3 21 21 H 1.09002 * 109.47128 * 53.55844 * 1 2 3 22 22 H 1.09001 * 109.47164 * 173.55120 * 1 2 3 23 23 H 0.96693 * 113.99856 * 179.97438 * 3 2 1 24 24 H 0.96999 * 120.00582 * 354.33419 * 7 6 4 25 25 H 1.09007 * 109.46345 * 179.97438 * 12 2 1 26 26 H 1.09000 * 109.47143 * 299.99224 * 12 2 1 27 27 H 1.09005 * 109.50539 * 300.74559 * 15 13 12 28 28 H 1.08999 * 109.50645 * 60.86409 * 15 13 12 29 29 H 1.09002 * 109.53607 * 297.76445 * 16 15 13 30 30 H 1.09003 * 109.57607 * 177.60001 * 16 15 13 31 31 H 1.09000 * 109.50673 * 182.40203 * 17 16 15 32 32 H 1.09001 * 109.53827 * 62.29900 * 17 16 15 33 33 H 1.08998 * 109.46294 * 299.16540 * 18 17 16 34 34 H 1.09004 * 109.45490 * 179.19182 * 18 17 16 35 35 H 1.00897 * 111.00399 * 62.35343 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.5801 -1.6361 1.1337 6 6 1.7926 -0.1785 2.4797 7 7 1.9204 -0.9313 3.5504 8 14 1.2863 1.6113 2.6513 9 1 1.0895 1.9347 4.0873 10 1 2.3490 2.4826 2.0884 11 1 0.0173 1.8397 1.9146 12 6 2.0400 -0.7212 -1.2493 13 6 1.5300 0.0000 -2.4985 14 1 0.4437 0.0781 -2.4547 15 6 1.9345 -0.7908 -3.7447 16 6 1.4394 -0.0552 -4.9930 17 6 2.0248 1.3595 -5.0078 18 6 1.6178 2.0881 -3.7250 19 7 2.1152 1.3454 -2.5599 20 1 -0.3633 0.4106 0.9420 21 1 -0.3633 0.6104 -0.8267 22 1 -0.3633 -1.0212 -0.1154 23 1 2.9702 1.4237 0.0004 24 1 2.1025 -1.8795 3.4578 25 1 3.1300 -0.7208 -1.2494 26 1 1.6767 -1.7489 -1.2492 27 1 3.0202 -0.8810 -3.7819 28 1 1.4874 -1.7841 -3.7065 29 1 0.3509 0.0011 -4.9751 30 1 1.7617 -0.5921 -5.8851 31 1 1.6421 1.9027 -5.8718 32 1 3.1119 1.3036 -5.0653 33 1 0.5311 2.1564 -3.6753 34 1 2.0451 3.0909 -3.7259 35 1 3.1233 1.3015 -2.5624 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307328641.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:49 Heat of formation + Delta-G solvation = -87.354636 kcal Electronic energy + Delta-G solvation = -15402.079013 eV Core-core repulsion = 13012.259444 eV Total energy + Delta-G solvation = -2389.819569 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21345 -38.11513 -34.46947 -33.57268 -32.44309 -31.20449 -27.54340 -26.69795 -24.22719 -22.87358 -21.19931 -20.79708 -19.70154 -16.97467 -16.41603 -16.09052 -15.98015 -15.56278 -14.99231 -14.83487 -14.68521 -14.37760 -13.81859 -13.38386 -13.07806 -12.89852 -12.78829 -12.40287 -12.17801 -12.12912 -11.89372 -11.69334 -11.63501 -11.40286 -11.23821 -10.66114 -10.50264 -10.04723 -8.90462 -8.59244 -6.44258 1.63771 1.66967 2.01135 2.58425 3.08172 3.46796 3.78685 3.97836 4.07580 4.12633 4.23856 4.37017 4.53800 4.57959 4.65490 4.75380 4.88656 4.94535 4.96667 5.05429 5.11279 5.16186 5.18502 5.23455 5.30217 5.44276 5.45324 5.80188 5.95309 6.07635 6.40471 6.55341 6.74187 7.34071 7.54014 8.64291 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.052191 B = 0.009418 C = 0.008622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.361831 B = 2972.426323 C = 3246.614098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.229 3.771 3 O -0.550 6.550 4 C -0.634 4.634 5 H 0.018 0.982 6 C -0.007 4.007 7 N -0.938 5.938 8 Si 1.132 2.868 9 H -0.333 1.333 10 H -0.268 1.268 11 H -0.268 1.268 12 C -0.112 4.112 13 C 0.102 3.898 14 H 0.068 0.932 15 C -0.151 4.151 16 C -0.115 4.115 17 C -0.151 4.151 18 C 0.059 3.941 19 N -0.668 5.668 20 H 0.035 0.965 21 H 0.056 0.944 22 H 0.050 0.950 23 H 0.365 0.635 24 H 0.252 0.748 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.337 0.663 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 4.818 -17.814 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.189 3.811 3 O -0.356 6.356 4 C -0.671 4.671 5 H 0.037 0.963 6 C -0.206 4.206 7 N -0.574 5.574 8 Si 0.961 3.039 9 H -0.265 1.265 10 H -0.194 1.194 11 H -0.195 1.195 12 C -0.150 4.150 13 C -0.008 4.008 14 H 0.086 0.914 15 C -0.190 4.190 16 C -0.153 4.153 17 C -0.190 4.190 18 C -0.071 4.071 19 N -0.297 5.297 20 H 0.054 0.946 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.212 0.788 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.098 0.902 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.761 6.364 -16.303 17.589 hybrid contribution 1.573 -2.645 -1.305 3.342 sum -0.189 3.720 -17.608 17.998 Atomic orbital electron populations 1.21892 0.96218 1.00029 1.00396 1.18833 0.91213 0.80332 0.90749 1.86241 1.25700 1.28249 1.95418 1.22837 1.39854 1.09879 0.94577 0.96319 1.27145 0.92564 1.08874 0.91985 1.71000 1.46933 1.06933 1.32526 0.82811 0.78433 0.71261 0.71403 1.26480 1.19357 1.19461 1.22025 0.99639 0.98191 0.95161 1.21420 0.98956 0.88090 0.92322 0.91424 1.22285 1.01007 0.99626 0.96094 1.21531 1.00454 0.96103 0.97192 1.22230 1.00854 0.96287 0.99664 1.22024 1.00271 0.97323 0.87463 1.60543 1.11923 1.15771 1.41474 0.94567 0.92532 0.93143 0.78809 0.93890 0.93315 0.93362 0.92253 0.92063 0.92221 0.91236 0.90460 0.91989 0.92174 0.90227 0.84507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 7.99 71.98 0.57 -5.06 16 2 C 0.23 10.35 0.64 -11.54 -0.01 10.34 16 3 O -0.55 -23.58 7.28 -148.98 -1.08 -24.67 16 4 C -0.63 -35.76 8.62 25.60 0.22 -35.54 16 5 H 0.02 1.15 7.99 -2.91 -0.02 1.13 16 6 C -0.01 -0.39 5.30 84.66 0.45 0.06 16 7 N -0.94 -60.15 13.69 21.45 0.29 -59.85 16 8 Si 1.13 56.64 24.75 68.60 1.70 58.33 16 9 H -0.33 -17.30 7.11 99.48 0.71 -16.59 16 10 H -0.27 -12.39 6.83 99.48 0.68 -11.71 16 11 H -0.27 -12.76 5.72 99.48 0.57 -12.20 16 12 C -0.11 -4.22 4.11 30.59 0.13 -4.09 16 13 C 0.10 3.08 2.20 44.94 0.10 3.18 16 14 H 0.07 2.20 6.32 -2.39 -0.02 2.19 16 15 C -0.15 -3.71 5.36 30.64 0.16 -3.54 16 16 C -0.12 -2.32 6.00 30.67 0.18 -2.14 16 17 C -0.15 -2.82 6.08 30.65 0.19 -2.63 16 18 C 0.06 1.33 6.55 86.33 0.57 1.90 16 19 N -0.67 -18.73 4.63 -491.68 -2.28 -21.01 16 20 H 0.04 1.71 4.80 -2.39 -0.01 1.70 16 21 H 0.06 2.22 6.68 -2.39 -0.02 2.20 16 22 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.37 14.42 9.04 -74.06 -0.67 13.75 16 24 H 0.25 16.27 8.73 -92.71 -0.81 15.46 16 25 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.34 8.86 8.79 -89.70 -0.79 8.07 16 Total: -1.00 -64.85 264.76 0.60 -64.25 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: -0.59 Total: 20.47 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 2.56 Total: -37.52 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.98 Total: -80.86 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -1.08 Total: -24.67 kcal Atomic # 14 Polarization: 56.64 SS G_CDS: 1.70 Total: 58.33 kcal Total: -64.85 0.60 -64.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307328641.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.109 kcal (2) G-P(sol) polarization free energy of solvation -64.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds