Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46751 * 2 1 4 4 H 1.09000 * 109.46717 * 175.36471 * 3 2 1 5 5 N 1.46900 * 109.47276 * 295.36045 * 3 2 1 6 6 C 1.46895 * 111.00432 * 273.99492 * 5 3 2 7 7 C 1.50703 * 109.47355 * 177.73982 * 6 5 3 8 8 H 1.08000 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99785 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47269 * 90.00302 * 11 9 7 13 13 H 1.48507 * 109.47068 * 209.99844 * 11 9 7 14 14 H 1.48495 * 109.47358 * 330.00104 * 11 9 7 15 15 C 1.52998 * 109.47257 * 55.36879 * 3 2 1 16 16 H 1.09007 * 111.01976 * 297.22810 * 15 3 2 17 17 C 1.55305 * 111.12670 * 173.01156 * 15 3 2 18 18 C 1.54380 * 102.25287 * 207.94622 * 17 15 3 19 19 O 1.43239 * 107.59020 * 21.35096 * 18 17 15 20 20 C 1.43653 * 109.97044 * 1.71453 * 19 18 17 21 21 H 1.09001 * 109.47158 * 302.34925 * 1 2 3 22 22 H 1.08996 * 109.47072 * 62.34290 * 1 2 3 23 23 H 1.08997 * 109.46841 * 182.34576 * 1 2 3 24 24 H 1.09001 * 109.47065 * 240.00352 * 2 1 3 25 25 H 1.08999 * 109.46807 * 119.99950 * 2 1 3 26 26 H 1.00907 * 110.99775 * 37.95154 * 5 3 2 27 27 H 1.09001 * 109.47390 * 297.74352 * 6 5 3 28 28 H 1.09003 * 109.47025 * 57.74347 * 6 5 3 29 29 H 0.96994 * 119.99384 * 180.02562 * 10 9 7 30 30 H 1.08999 * 110.85194 * 89.74987 * 17 15 3 31 31 H 1.09009 * 111.01975 * 326.21257 * 17 15 3 32 32 H 1.08998 * 109.82639 * 261.84032 * 18 17 15 33 33 H 1.09000 * 109.82816 * 140.86716 * 18 17 15 34 34 H 1.08997 * 110.30757 * 94.48292 * 20 19 18 35 35 H 1.09000 * 110.30844 * 216.65527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1268 1.4437 0.0831 5 7 1.6439 2.1020 -1.2515 6 6 2.6246 1.8460 -2.3148 7 6 2.1576 2.4902 -3.5946 8 1 1.2253 3.0349 -3.6161 9 6 2.9201 2.3832 -4.7384 10 7 4.0547 1.7185 -4.7126 11 14 2.3408 3.1812 -6.3249 12 1 2.8668 4.5677 -6.4024 13 1 2.8390 2.3974 -7.4838 14 1 0.8564 3.2127 -6.3500 15 6 1.4371 2.1966 1.1869 16 1 0.3517 2.2530 1.1037 17 6 2.0619 3.6116 1.3269 18 6 1.9256 3.8816 2.8408 19 8 1.7859 2.6153 3.4955 20 6 1.8614 1.5533 2.5311 21 1 -0.3633 0.5499 0.8682 22 1 -0.3633 0.4770 -0.9102 23 1 -0.3633 -1.0268 0.0421 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.7194 1.8138 -1.5352 27 1 3.5892 2.2648 -2.0280 28 1 2.7254 0.7710 -2.4649 29 1 4.5911 1.6437 -5.5172 30 1 1.4973 4.3438 0.7498 31 1 3.1097 3.6078 1.0264 32 1 1.0441 4.4944 3.0291 33 1 2.8168 4.3910 3.2072 34 1 2.8815 1.1751 2.4641 35 1 1.1758 0.7495 2.7990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308178064.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -64.247654 kcal Electronic energy + Delta-G solvation = -14750.327020 eV Core-core repulsion = 12361.509445 eV Total energy + Delta-G solvation = -2388.817575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.47865 -36.75064 -33.23805 -31.42426 -31.15409 -28.90997 -26.72282 -24.52935 -22.87151 -21.69412 -21.14824 -19.15971 -16.56482 -16.47284 -15.57119 -15.11305 -14.49873 -14.33321 -14.02497 -13.56171 -13.23265 -12.96656 -12.48316 -12.16638 -11.60337 -11.59438 -11.27811 -11.13052 -10.90397 -10.83360 -10.61130 -10.42546 -10.32212 -10.15043 -9.82120 -9.38381 -9.17105 -8.50577 -7.27601 -6.05454 -4.07439 3.30350 3.36300 3.39741 4.06089 4.40303 4.71067 4.96590 5.10059 5.30512 5.33275 5.34516 5.39347 5.50702 5.53928 5.67876 5.83480 5.86332 5.92966 6.00688 6.09150 6.21246 6.28826 6.38228 6.45944 6.58379 6.64055 7.12567 7.25031 7.44057 7.76501 8.11445 8.38211 8.61081 9.02283 9.57712 11.05609 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041104 B = 0.006949 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.042224 B = 4028.673240 C = 4344.602503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.156 4.156 3 C 0.097 3.903 4 H 0.072 0.928 5 N -0.683 5.683 6 C 0.195 3.805 7 C -0.515 4.515 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.287 1.287 14 H -0.274 1.274 15 C -0.107 4.107 16 H 0.085 0.915 17 C -0.136 4.136 18 C 0.047 3.953 19 O -0.392 6.392 20 C 0.055 3.945 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.330 0.670 27 H 0.026 0.974 28 H -0.013 1.013 29 H 0.261 0.739 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.929 -0.552 11.524 12.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C -0.014 4.014 4 H 0.090 0.910 5 N -0.313 5.313 6 C 0.069 3.931 7 C -0.554 4.554 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.213 1.213 14 H -0.199 1.199 15 C -0.126 4.126 16 H 0.103 0.897 17 C -0.173 4.173 18 C -0.029 4.029 19 O -0.312 6.312 20 C -0.022 4.022 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.148 0.852 27 H 0.044 0.956 28 H 0.005 0.995 29 H 0.071 0.929 30 H 0.104 0.896 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.521 -0.014 11.778 12.616 hybrid contribution -0.272 -0.534 -1.446 1.565 sum -4.793 -0.548 10.332 11.403 Atomic orbital electron populations 1.21818 0.96070 1.01085 1.02021 1.22223 0.96412 0.98860 1.01989 1.21425 0.98905 0.90038 0.91043 0.91017 1.60751 1.06610 1.60242 1.03744 1.19557 0.91103 0.94449 0.88030 1.21192 1.07000 1.33425 0.93755 0.92066 1.24984 0.94974 0.95458 0.99120 1.69963 1.13169 1.41691 1.28878 0.86497 0.78928 0.79280 0.82682 1.20621 1.21306 1.19878 1.22846 1.01001 0.94791 0.93941 0.89685 1.22977 1.02478 0.97629 0.94239 1.23186 1.00629 0.86150 0.92949 1.88344 1.94614 1.14904 1.33317 1.23440 1.00643 0.90289 0.87833 0.92594 0.92263 0.93274 0.91536 0.92431 0.85162 0.95596 0.99524 0.92919 0.89595 0.90630 0.91786 0.91990 0.92365 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.29 37.16 0.35 -1.69 16 2 C -0.16 -2.34 5.52 -26.72 -0.15 -2.49 16 3 C 0.10 1.63 1.86 -67.71 -0.13 1.50 16 4 H 0.07 1.30 7.78 -51.93 -0.40 0.90 16 5 N -0.68 -13.94 6.10 -107.99 -0.66 -14.60 16 6 C 0.20 4.99 5.23 -4.98 -0.03 4.97 16 7 C -0.52 -14.41 9.29 -34.44 -0.32 -14.73 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 11 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 C -0.11 -1.54 2.20 -88.37 -0.19 -1.73 16 16 H 0.08 1.21 6.56 -51.92 -0.34 0.87 16 17 C -0.14 -1.95 6.34 -24.79 -0.16 -2.11 16 18 C 0.05 0.62 7.79 37.88 0.30 0.91 16 19 O -0.39 -5.78 11.36 -35.23 -0.40 -6.18 16 20 C 0.05 0.73 6.28 38.18 0.24 0.97 16 21 H 0.06 0.68 6.29 -51.93 -0.33 0.36 16 22 H 0.06 0.85 6.50 -51.93 -0.34 0.51 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.07 1.14 7.40 -51.93 -0.38 0.76 16 25 H 0.06 0.76 7.52 -51.93 -0.39 0.37 16 26 H 0.33 6.55 6.52 -39.29 -0.26 6.30 16 27 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 28 H -0.01 -0.35 7.40 -51.93 -0.38 -0.74 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.07 1.16 8.01 -51.92 -0.42 0.74 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 277.81 15.07 4.19 4.19 Total: -1.00 -29.34 277.81 -7.08 -36.42 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.74 Total: 2.45 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: -0.19 Total: -12.90 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.08 Total: -40.53 kcal Atomic # 8 Polarization: -5.78 SS G_CDS: -0.40 Total: -6.18 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.34 -7.08 -36.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178064.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.830 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds