Wall clock time and date at job start Mon Mar 30 2020 03:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53004 * 109.46751 * 2 1 4 4 H 1.09000 * 109.46717 * 175.36471 * 3 2 1 5 5 N 1.46900 * 109.47276 * 295.36045 * 3 2 1 6 6 C 1.46895 * 111.00432 * 273.99492 * 5 3 2 7 7 C 1.50703 * 109.47355 * 177.73982 * 6 5 3 8 8 H 1.08000 * 119.99726 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00093 * 180.02562 * 7 6 5 10 10 N 1.31521 * 119.99900 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99785 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47269 * 90.00302 * 11 9 7 13 13 H 1.48507 * 109.47068 * 209.99844 * 11 9 7 14 14 H 1.48495 * 109.47358 * 330.00104 * 11 9 7 15 15 C 1.52998 * 109.47257 * 55.36879 * 3 2 1 16 16 H 1.09007 * 111.01976 * 297.22810 * 15 3 2 17 17 C 1.55305 * 111.12670 * 173.01156 * 15 3 2 18 18 C 1.54380 * 102.25287 * 207.94622 * 17 15 3 19 19 O 1.43239 * 107.59020 * 21.35096 * 18 17 15 20 20 C 1.43653 * 109.97044 * 1.71453 * 19 18 17 21 21 H 1.09001 * 109.47158 * 302.34925 * 1 2 3 22 22 H 1.08996 * 109.47072 * 62.34290 * 1 2 3 23 23 H 1.08997 * 109.46841 * 182.34576 * 1 2 3 24 24 H 1.09001 * 109.47065 * 240.00352 * 2 1 3 25 25 H 1.08999 * 109.46807 * 119.99950 * 2 1 3 26 26 H 1.00907 * 110.99775 * 37.95154 * 5 3 2 27 27 H 1.09001 * 109.47390 * 297.74352 * 6 5 3 28 28 H 1.09003 * 109.47025 * 57.74347 * 6 5 3 29 29 H 0.96994 * 119.99384 * 180.02562 * 10 9 7 30 30 H 1.08999 * 110.85194 * 89.74987 * 17 15 3 31 31 H 1.09009 * 111.01975 * 326.21257 * 17 15 3 32 32 H 1.08998 * 109.82639 * 261.84032 * 18 17 15 33 33 H 1.09000 * 109.82816 * 140.86716 * 18 17 15 34 34 H 1.08997 * 110.30757 * 94.48292 * 20 19 18 35 35 H 1.09000 * 110.30844 * 216.65527 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1268 1.4437 0.0831 5 7 1.6439 2.1020 -1.2515 6 6 2.6246 1.8460 -2.3148 7 6 2.1576 2.4902 -3.5946 8 1 1.2253 3.0349 -3.6161 9 6 2.9201 2.3832 -4.7384 10 7 4.0547 1.7185 -4.7126 11 14 2.3408 3.1812 -6.3249 12 1 2.8668 4.5677 -6.4024 13 1 2.8390 2.3974 -7.4838 14 1 0.8564 3.2127 -6.3500 15 6 1.4371 2.1966 1.1869 16 1 0.3517 2.2530 1.1037 17 6 2.0619 3.6116 1.3269 18 6 1.9256 3.8816 2.8408 19 8 1.7859 2.6153 3.4955 20 6 1.8614 1.5533 2.5311 21 1 -0.3633 0.5499 0.8682 22 1 -0.3633 0.4770 -0.9102 23 1 -0.3633 -1.0268 0.0421 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 0.7194 1.8138 -1.5352 27 1 3.5892 2.2648 -2.0280 28 1 2.7254 0.7710 -2.4649 29 1 4.5911 1.6437 -5.5172 30 1 1.4973 4.3438 0.7498 31 1 3.1097 3.6078 1.0264 32 1 1.0441 4.4944 3.0291 33 1 2.8168 4.3910 3.2072 34 1 2.8815 1.1751 2.4641 35 1 1.1758 0.7495 2.7990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308178064.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:26 Heat of formation + Delta-G solvation = -84.180591 kcal Electronic energy + Delta-G solvation = -14751.191377 eV Core-core repulsion = 12361.509445 eV Total energy + Delta-G solvation = -2389.681932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66250 -38.16651 -35.22035 -33.04170 -32.47155 -30.00708 -28.60049 -25.99795 -24.36779 -23.14321 -22.52274 -20.49721 -18.56836 -17.62743 -16.90814 -16.75393 -16.14718 -15.65887 -15.35925 -14.87069 -14.62347 -14.28105 -14.08702 -13.90184 -13.41643 -12.93268 -12.75307 -12.57656 -12.41121 -12.23774 -12.12024 -11.89976 -11.69287 -11.57208 -11.41581 -11.12026 -10.66321 -10.44443 -9.02462 -8.23001 -6.33934 1.40577 1.42042 1.53143 2.39237 2.98294 3.10629 3.37583 3.75168 3.90403 4.10627 4.20713 4.24387 4.27532 4.40750 4.46423 4.60665 4.76711 4.83537 4.86042 4.91796 5.03550 5.09486 5.15111 5.18530 5.25214 5.32705 5.39807 5.46377 5.62562 6.03169 6.05674 6.48165 6.75597 6.92939 7.37347 8.88527 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.041104 B = 0.006949 C = 0.006443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.042224 B = 4028.673240 C = 4344.602503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.151 4.151 3 C 0.097 3.903 4 H 0.051 0.949 5 N -0.679 5.679 6 C 0.213 3.787 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.001 3.999 10 N -0.934 5.934 11 Si 0.971 3.029 12 H -0.274 1.274 13 H -0.282 1.282 14 H -0.263 1.263 15 C -0.099 4.099 16 H 0.094 0.906 17 C -0.138 4.138 18 C 0.051 3.949 19 O -0.405 6.405 20 C 0.059 3.941 21 H 0.073 0.927 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.037 0.963 25 H 0.081 0.919 26 H 0.335 0.665 27 H -0.006 1.006 28 H -0.039 1.039 29 H 0.264 0.736 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -0.227 12.136 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.190 4.190 3 C -0.014 4.014 4 H 0.069 0.931 5 N -0.310 5.310 6 C 0.085 3.915 7 C -0.573 4.573 8 H 0.082 0.918 9 C -0.197 4.197 10 N -0.575 5.575 11 Si 0.796 3.204 12 H -0.199 1.199 13 H -0.208 1.208 14 H -0.187 1.187 15 C -0.118 4.118 16 H 0.113 0.887 17 C -0.176 4.176 18 C -0.026 4.026 19 O -0.324 6.324 20 C -0.018 4.018 21 H 0.092 0.908 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.056 0.944 25 H 0.100 0.900 26 H 0.154 0.846 27 H 0.012 0.988 28 H -0.021 1.021 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.038 0.312 12.415 13.809 hybrid contribution 0.229 -0.649 -1.581 1.724 sum -5.809 -0.337 10.834 12.298 Atomic orbital electron populations 1.21791 0.94269 1.02384 1.02078 1.22148 0.97919 0.97163 1.01764 1.21464 0.98045 0.91647 0.90213 0.93113 1.60625 1.05700 1.61100 1.03559 1.19147 0.90928 0.92282 0.89114 1.21570 1.07229 1.33637 0.94895 0.91771 1.25939 0.94945 0.95869 1.02939 1.70095 1.14417 1.42918 1.30039 0.85356 0.78924 0.78244 0.77916 1.19936 1.20783 1.18671 1.22745 1.01207 0.94547 0.93331 0.88747 1.22956 1.01332 0.97669 0.95624 1.23238 1.02014 0.85917 0.91383 1.88332 1.94745 1.15536 1.33830 1.23467 1.01214 0.90433 0.86677 0.90834 0.93660 0.91568 0.94408 0.89997 0.84551 0.98767 1.02101 0.92686 0.90026 0.92333 0.90098 0.90948 0.92437 0.88093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.29 71.99 0.67 -2.98 16 2 C -0.15 -4.42 5.52 30.60 0.17 -4.25 16 3 C 0.10 3.26 1.86 44.92 0.08 3.34 16 4 H 0.05 1.91 7.78 -2.39 -0.02 1.89 16 5 N -0.68 -28.17 6.10 -495.58 -3.02 -31.19 16 6 C 0.21 11.33 5.23 85.56 0.45 11.77 16 7 C -0.54 -30.38 9.29 25.60 0.24 -30.15 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.93 -56.62 13.29 21.45 0.28 -56.34 16 11 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 15 C -0.10 -2.72 2.20 -9.34 -0.02 -2.74 16 16 H 0.09 2.46 6.56 -2.38 -0.02 2.44 16 17 C -0.14 -3.87 6.34 31.85 0.20 -3.67 16 18 C 0.05 1.21 7.79 72.45 0.56 1.78 16 19 O -0.40 -10.93 11.36 -148.98 -1.69 -12.62 16 20 C 0.06 1.44 6.28 72.65 0.46 1.89 16 21 H 0.07 1.56 6.29 -2.39 -0.02 1.55 16 22 H 0.04 1.24 6.50 -2.39 -0.02 1.22 16 23 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.04 1.32 7.40 -2.39 -0.02 1.30 16 25 H 0.08 2.00 7.52 -2.39 -0.02 1.98 16 26 H 0.34 13.34 6.52 -89.69 -0.59 12.75 16 27 H -0.01 -0.34 8.10 -2.39 -0.02 -0.36 16 28 H -0.04 -2.21 7.40 -2.39 -0.02 -2.23 16 29 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 1.82 8.01 -2.38 -0.02 1.80 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 1.42 8.03 -2.39 -0.02 1.40 16 35 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -63.12 277.81 1.34 -61.78 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.47 Total: 16.59 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: 3.27 Total: -24.46 kcal Atomic # 7 Polarization: -84.79 SS G_CDS: -2.74 Total: -87.53 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -1.69 Total: -12.62 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.12 1.34 -61.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178064.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.401 kcal (2) G-P(sol) polarization free energy of solvation -63.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds