Wall clock time and date at job start Mon Mar 30 2020 03:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47597 * 2 1 4 4 H 1.09001 * 109.46717 * 56.19906 * 3 2 1 5 5 N 1.46903 * 109.47058 * 296.20545 * 3 2 1 6 6 C 1.46897 * 110.99945 * 294.48929 * 5 3 2 7 7 C 1.50703 * 109.47381 * 175.58627 * 6 5 3 8 8 H 1.08001 * 119.99204 * 0.02562 * 7 6 5 9 9 C 1.37871 * 120.00047 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00267 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99836 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47297 * 89.99687 * 11 9 7 13 13 H 1.48493 * 109.47005 * 209.99957 * 11 9 7 14 14 H 1.48507 * 109.46899 * 329.99816 * 11 9 7 15 15 C 1.53001 * 109.47422 * 176.20314 * 3 2 1 16 16 H 1.08998 * 110.75105 * 62.02129 * 15 3 2 17 17 C 1.55307 * 110.84509 * 185.71639 * 15 3 2 18 18 C 1.54946 * 100.94216 * 152.32370 * 17 15 3 19 19 O 1.43646 * 105.13554 * 323.55459 * 18 17 15 20 20 C 1.43240 * 109.97185 * 24.42633 * 19 18 17 21 21 H 1.08997 * 109.47137 * 176.80248 * 1 2 3 22 22 H 1.09002 * 109.47052 * 296.80357 * 1 2 3 23 23 H 1.08997 * 109.47082 * 56.80308 * 1 2 3 24 24 H 1.09002 * 109.47211 * 239.99845 * 2 1 3 25 25 H 1.09004 * 109.47166 * 120.00471 * 2 1 3 26 26 H 1.00902 * 110.99714 * 170.53574 * 5 3 2 27 27 H 1.08998 * 109.47463 * 295.59267 * 6 5 3 28 28 H 1.09006 * 109.46922 * 55.59074 * 6 5 3 29 29 H 0.97002 * 119.99919 * 180.02562 * 10 9 7 30 30 H 1.09002 * 111.12584 * 270.23855 * 17 15 3 31 31 H 1.08999 * 111.12624 * 34.40414 * 17 15 3 32 32 H 1.09002 * 110.31508 * 204.63878 * 18 17 15 33 33 H 1.09003 * 110.39522 * 82.50755 * 18 17 15 34 34 H 1.09001 * 109.83316 * 238.77829 * 20 19 18 35 35 H 1.09000 * 109.83540 * 117.80046 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6222 1.9755 0.8540 5 7 1.6267 2.1080 -1.2427 6 6 2.2767 1.4957 -2.4091 7 6 1.7480 2.1304 -3.6696 8 1 1.0039 2.9109 -3.6099 9 6 2.2143 1.7147 -4.8986 10 7 3.1208 0.7647 -4.9711 11 14 1.5594 2.5020 -6.4610 12 1 2.4009 3.6732 -6.8155 13 1 1.5972 1.5123 -7.5674 14 1 0.1594 2.9465 -6.2420 15 6 3.5671 1.4434 0.0955 16 1 4.0084 0.9457 -0.7680 17 6 4.1107 2.8908 0.2424 18 6 5.4289 2.6330 1.0148 19 8 5.1309 1.5547 1.9159 20 6 4.0358 0.7825 1.4096 21 1 -0.3633 -1.0260 -0.0573 22 1 -0.3633 0.4634 0.9173 23 1 -0.3633 0.5627 -0.8599 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.8150 3.0984 -1.2022 27 1 3.3538 1.6512 -2.3481 28 1 2.0642 0.4267 -2.4239 29 1 3.4491 0.4725 -5.8359 30 1 4.3075 3.3374 -0.7323 31 1 3.4284 3.5095 0.8253 32 1 5.7208 3.5226 1.5728 33 1 6.2221 2.3420 0.3260 34 1 3.2204 0.7786 2.1329 35 1 4.3628 -0.2387 1.2137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308178393.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:28 Heat of formation + Delta-G solvation = -62.742901 kcal Electronic energy + Delta-G solvation = -14942.388500 eV Core-core repulsion = 12553.636176 eV Total energy + Delta-G solvation = -2388.752324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.52408 -36.64088 -33.00444 -31.57540 -30.93833 -29.11007 -26.75049 -24.25719 -22.63070 -22.04088 -21.00985 -18.81464 -17.03727 -16.09597 -15.92165 -15.00659 -14.51826 -14.47117 -13.62350 -13.22760 -13.04498 -12.88990 -12.45577 -12.12385 -11.79961 -11.57855 -11.24924 -11.06158 -10.86095 -10.69312 -10.52172 -10.44138 -10.22653 -10.07216 -9.65946 -9.36750 -9.15232 -8.47721 -7.27742 -6.04384 -4.05581 3.30018 3.36649 3.40968 4.07206 4.41928 4.74180 4.96181 5.09087 5.31151 5.33499 5.36702 5.51106 5.62160 5.72029 5.77242 5.89915 5.93165 5.97455 6.08873 6.16438 6.24322 6.42467 6.45438 6.53473 6.82714 6.94447 7.15211 7.27552 7.41020 7.78407 8.12828 8.40491 8.60063 9.03670 9.59212 11.06333 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031542 B = 0.008442 C = 0.007305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.485459 B = 3315.962160 C = 3832.040881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.101 3.899 4 H 0.066 0.934 5 N -0.678 5.678 6 C 0.190 3.810 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.896 3.104 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C -0.157 4.157 16 H 0.095 0.905 17 C -0.150 4.150 18 C 0.053 3.947 19 O -0.393 6.393 20 C 0.059 3.941 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.327 0.673 27 H -0.010 1.010 28 H 0.032 0.968 29 H 0.261 0.739 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.799 1.386 10.527 10.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.155 4.155 3 C -0.010 4.010 4 H 0.085 0.915 5 N -0.307 5.307 6 C 0.064 3.936 7 C -0.551 4.551 8 H 0.079 0.921 9 C -0.146 4.146 10 N -0.538 5.538 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.178 4.178 16 H 0.113 0.887 17 C -0.188 4.188 18 C -0.024 4.024 19 O -0.312 6.312 20 C -0.018 4.018 21 H 0.059 0.941 22 H 0.060 0.940 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.008 0.992 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.410 0.859 10.501 10.544 hybrid contribution 0.625 0.684 -1.133 1.463 sum 1.034 1.543 9.368 9.550 Atomic orbital electron populations 1.21613 0.95519 1.00421 1.02171 1.21597 0.96719 0.95862 1.01326 1.21511 0.89260 0.95873 0.94342 0.91541 1.60790 1.61718 1.06472 1.01714 1.19628 0.91840 0.95724 0.86430 1.21206 1.23016 1.20398 0.90463 0.92112 1.24972 0.95170 0.95224 0.99197 1.69954 1.29868 1.29023 1.24928 0.86527 0.79377 0.78905 0.82771 1.20812 1.21286 1.19813 1.23587 1.00193 0.95612 0.98389 0.88660 1.23257 0.96685 0.97358 1.01455 1.23329 0.97031 0.89830 0.92162 1.88328 1.52386 1.43272 1.47248 1.23195 0.88777 0.94830 0.95015 0.94115 0.94038 0.90699 0.91185 0.93073 0.85616 0.99247 0.95021 0.92980 0.89671 0.90690 0.90254 0.92382 0.91471 0.91864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.83 37.16 0.37 -1.84 16 2 C -0.12 -1.93 5.15 -26.73 -0.14 -2.06 16 3 C 0.10 1.70 1.91 -67.71 -0.13 1.57 16 4 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 5 N -0.68 -13.65 5.68 -107.99 -0.61 -14.27 16 6 C 0.19 4.71 4.58 -4.98 -0.02 4.69 16 7 C -0.51 -14.15 9.36 -34.44 -0.32 -14.48 16 8 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 9 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.38 13.29 55.43 0.74 -25.65 16 11 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 15 C -0.16 -2.55 2.02 -88.67 -0.18 -2.73 16 16 H 0.10 1.82 6.40 -51.93 -0.33 1.49 16 17 C -0.15 -2.21 6.04 -24.48 -0.15 -2.35 16 18 C 0.05 0.74 7.78 38.18 0.30 1.03 16 19 O -0.39 -6.21 11.36 -35.23 -0.40 -6.61 16 20 C 0.06 0.87 6.38 37.88 0.24 1.11 16 21 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.07 1.37 7.63 -51.93 -0.40 0.97 16 24 H 0.07 1.33 6.28 -51.93 -0.33 1.00 16 25 H 0.05 0.72 7.02 -51.93 -0.36 0.36 16 26 H 0.33 6.34 8.35 -39.29 -0.33 6.02 16 27 H -0.01 -0.27 6.45 -51.93 -0.34 -0.60 16 28 H 0.03 0.85 6.19 -51.93 -0.32 0.53 16 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.02 8.03 -51.93 -0.42 0.60 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.92 7.52 -51.93 -0.39 0.52 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -28.97 276.66 -6.98 -35.95 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -5.71 Total: 3.51 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -0.13 Total: -13.60 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.12 Total: -39.91 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.40 Total: -6.61 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -28.97 -6.98 -35.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178393.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.793 kcal (2) G-P(sol) polarization free energy of solvation -28.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds