Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47526 * 2 1 4 4 H 1.09001 * 109.47087 * 305.74932 * 3 2 1 5 5 N 1.46896 * 109.47448 * 185.74828 * 3 2 1 6 6 C 1.46893 * 111.00116 * 87.46722 * 5 3 2 7 7 C 1.50700 * 109.47201 * 183.78154 * 6 5 3 8 8 H 1.08001 * 120.00019 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00250 * 179.97438 * 7 6 5 10 10 N 1.31521 * 120.00221 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00078 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47127 * 89.99716 * 11 9 7 13 13 H 1.48495 * 109.47488 * 209.99931 * 11 9 7 14 14 H 1.48501 * 109.46782 * 329.99974 * 11 9 7 15 15 C 1.53000 * 109.46873 * 65.74543 * 3 2 1 16 16 H 1.09005 * 110.80326 * 308.62776 * 15 3 2 17 17 C 1.54815 * 110.90682 * 185.00105 * 15 3 2 18 18 C 1.54103 * 104.18658 * 220.92249 * 17 15 3 19 19 O 1.43740 * 107.29469 * 357.96975 * 18 17 15 20 20 C 1.44376 * 106.97440 * 26.51526 * 19 18 17 21 21 H 1.09004 * 109.47189 * 174.22241 * 1 2 3 22 22 H 1.08999 * 109.47014 * 294.21803 * 1 2 3 23 23 H 1.09003 * 109.47136 * 54.22289 * 1 2 3 24 24 H 1.09010 * 109.47174 * 240.00028 * 2 1 3 25 25 H 1.09004 * 109.47228 * 120.00506 * 2 1 3 26 26 H 1.00901 * 110.99708 * 323.50678 * 5 3 2 27 27 H 1.09004 * 109.47448 * 303.77640 * 6 5 3 28 28 H 1.08994 * 109.47530 * 63.78227 * 6 5 3 29 29 H 0.96991 * 120.00027 * 180.02562 * 10 9 7 30 30 H 1.08998 * 110.48776 * 339.60126 * 17 15 3 31 31 H 1.09002 * 110.48535 * 102.11289 * 17 15 3 32 32 H 1.08993 * 109.87635 * 117.40000 * 18 17 15 33 33 H 1.08998 * 109.87606 * 238.39647 * 18 17 15 34 34 H 1.09008 * 110.61888 * 201.43646 * 20 19 18 35 35 H 1.09001 * 110.62085 * 78.43936 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5951 1.9851 -0.8340 5 7 3.5024 1.4447 -0.1387 6 6 3.8970 1.4307 -1.5536 7 6 5.3978 1.3398 -1.6556 8 1 5.9985 1.2971 -0.7591 9 6 6.0042 1.3111 -2.8936 10 7 7.3140 1.2322 -2.9826 11 14 4.9654 1.3841 -4.4443 12 1 4.7748 2.8010 -4.8462 13 1 5.6527 0.6483 -5.5357 14 1 3.6428 0.7613 -4.1838 15 6 1.6514 2.1207 1.3152 16 1 0.5867 1.9980 1.5143 17 6 2.0415 3.6189 1.3005 18 6 2.5969 3.8784 2.7143 19 8 2.4747 2.6515 3.4533 20 6 2.5013 1.5755 2.4911 21 1 -0.3634 -1.0225 -0.1035 22 1 -0.3633 0.4216 0.9372 23 1 -0.3633 0.6008 -0.8338 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 3.9140 0.6697 0.3593 27 1 3.4465 0.5700 -2.0480 28 1 3.5550 2.3466 -2.0353 29 1 7.7406 1.2124 -3.8535 30 1 2.8085 3.8060 0.5490 31 1 1.1653 4.2394 1.1127 32 1 3.6449 4.1713 2.6528 33 1 2.0202 4.6654 3.2003 34 1 2.0475 0.6763 2.9081 35 1 3.5225 1.3760 2.1664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308178395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = -58.771749 kcal Electronic energy + Delta-G solvation = -14876.561420 eV Core-core repulsion = 12487.981298 eV Total energy + Delta-G solvation = -2388.580122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.44304 -36.62529 -33.29271 -31.65419 -31.34061 -28.91221 -27.10186 -24.34229 -22.95417 -21.52297 -21.05366 -19.36954 -16.84540 -16.30109 -15.75410 -14.87785 -14.69024 -14.37720 -14.00234 -13.68703 -13.12563 -12.87850 -12.61789 -12.33934 -11.84755 -11.72164 -11.48874 -11.20806 -11.10855 -10.79676 -10.63964 -10.49498 -10.17781 -10.12297 -9.76089 -9.33637 -9.28859 -8.62509 -7.49629 -6.09067 -4.07338 3.25816 3.33336 3.34957 4.21379 4.38685 4.81355 4.90168 5.06280 5.21713 5.23754 5.25640 5.35762 5.43901 5.58068 5.64364 5.77312 5.87651 5.95557 6.04617 6.08323 6.14430 6.22110 6.28361 6.34796 6.50439 6.58172 6.76303 7.02962 7.14865 7.56637 7.86124 8.27963 8.60948 8.98611 9.52779 11.04173 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031406 B = 0.008560 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.327711 B = 3270.209093 C = 3750.215235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C 0.092 3.908 4 H 0.073 0.927 5 N -0.674 5.674 6 C 0.165 3.835 7 C -0.518 4.518 8 H 0.078 0.922 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C -0.108 4.108 16 H 0.077 0.923 17 C -0.146 4.146 18 C 0.052 3.948 19 O -0.388 6.388 20 C 0.053 3.947 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.336 0.664 27 H -0.015 1.015 28 H 0.021 0.979 29 H 0.264 0.736 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.194 0.805 6.920 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C -0.019 4.019 4 H 0.091 0.909 5 N -0.304 5.304 6 C 0.037 3.963 7 C -0.556 4.556 8 H 0.097 0.903 9 C -0.133 4.133 10 N -0.538 5.538 11 Si 0.705 3.295 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.127 4.127 16 H 0.096 0.904 17 C -0.184 4.184 18 C -0.025 4.025 19 O -0.308 6.308 20 C -0.024 4.024 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.155 0.845 27 H 0.003 0.997 28 H 0.039 0.961 29 H 0.074 0.926 30 H 0.112 0.888 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.979 1.476 7.060 14.848 hybrid contribution -0.615 -0.837 -1.494 1.820 sum -13.594 0.638 5.566 14.703 Atomic orbital electron populations 1.21761 0.96063 1.01158 1.01577 1.22290 0.96155 0.98736 1.02254 1.21497 0.90623 0.93638 0.96177 0.90896 1.60599 1.04867 1.49820 1.15070 1.20013 0.96946 0.94776 0.84566 1.21068 0.89628 1.50484 0.94400 0.90349 1.24909 0.94801 0.94714 0.98881 1.69900 1.08572 1.50744 1.24624 0.86827 0.80845 0.78525 0.83328 1.20184 1.21240 1.19274 1.22747 0.99246 0.95085 0.95636 0.90442 1.22907 1.01650 0.95808 0.98026 1.23063 1.00434 0.87368 0.91623 1.88768 1.95039 1.15369 1.31594 1.23609 1.00744 0.90062 0.87951 0.93217 0.92690 0.92903 0.91699 0.91931 0.84517 0.99718 0.96131 0.92638 0.88795 0.91859 0.92367 0.90951 0.90222 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.57 37.15 0.36 -1.35 16 2 C -0.16 -2.16 5.33 -26.74 -0.14 -2.31 16 3 C 0.09 1.44 1.76 -67.72 -0.12 1.32 16 4 H 0.07 1.20 7.81 -51.93 -0.41 0.79 16 5 N -0.67 -13.03 4.84 -108.00 -0.52 -13.56 16 6 C 0.16 3.86 4.29 -4.98 -0.02 3.84 16 7 C -0.52 -14.51 9.83 -34.44 -0.34 -14.85 16 8 H 0.08 2.39 8.06 -52.49 -0.42 1.96 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 11 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 15 C -0.11 -1.50 2.84 -88.61 -0.25 -1.76 16 16 H 0.08 0.98 6.46 -51.93 -0.34 0.65 16 17 C -0.15 -2.06 6.50 -25.20 -0.16 -2.23 16 18 C 0.05 0.73 7.70 37.73 0.29 1.02 16 19 O -0.39 -6.15 11.52 -35.23 -0.41 -6.56 16 20 C 0.05 0.77 6.46 38.21 0.25 1.02 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.05 0.58 6.72 -51.93 -0.35 0.23 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.06 1.02 7.48 -51.92 -0.39 0.63 16 25 H 0.06 0.82 7.50 -51.93 -0.39 0.43 16 26 H 0.34 6.45 7.37 -39.29 -0.29 6.16 16 27 H -0.01 -0.35 6.52 -51.93 -0.34 -0.69 16 28 H 0.02 0.49 7.56 -51.93 -0.39 0.10 16 29 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 30 H 0.09 1.53 7.47 -51.93 -0.39 1.15 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.03 8.04 -51.92 -0.42 0.61 16 35 H 0.08 1.24 6.29 -51.93 -0.33 0.92 16 LS Contribution 274.57 15.07 4.14 4.14 Total: -1.00 -29.78 274.57 -6.65 -36.43 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.72 Total: 2.94 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: -0.24 Total: -13.42 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.25 Total: -40.25 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.41 Total: -6.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.78 -6.65 -36.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.342 kcal (2) G-P(sol) polarization free energy of solvation -29.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds