Wall clock time and date at job start Mon Mar 30 2020 03:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52995 * 109.47526 * 2 1 4 4 H 1.09001 * 109.47087 * 305.74932 * 3 2 1 5 5 N 1.46896 * 109.47448 * 185.74828 * 3 2 1 6 6 C 1.46893 * 111.00116 * 87.46722 * 5 3 2 7 7 C 1.50700 * 109.47201 * 183.78154 * 6 5 3 8 8 H 1.08001 * 120.00019 * 359.97438 * 7 6 5 9 9 C 1.37876 * 120.00250 * 179.97438 * 7 6 5 10 10 N 1.31521 * 120.00221 * 179.97438 * 9 7 6 11 11 Si 1.86795 * 120.00078 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47127 * 89.99716 * 11 9 7 13 13 H 1.48495 * 109.47488 * 209.99931 * 11 9 7 14 14 H 1.48501 * 109.46782 * 329.99974 * 11 9 7 15 15 C 1.53000 * 109.46873 * 65.74543 * 3 2 1 16 16 H 1.09005 * 110.80326 * 308.62776 * 15 3 2 17 17 C 1.54815 * 110.90682 * 185.00105 * 15 3 2 18 18 C 1.54103 * 104.18658 * 220.92249 * 17 15 3 19 19 O 1.43740 * 107.29469 * 357.96975 * 18 17 15 20 20 C 1.44376 * 106.97440 * 26.51526 * 19 18 17 21 21 H 1.09004 * 109.47189 * 174.22241 * 1 2 3 22 22 H 1.08999 * 109.47014 * 294.21803 * 1 2 3 23 23 H 1.09003 * 109.47136 * 54.22289 * 1 2 3 24 24 H 1.09010 * 109.47174 * 240.00028 * 2 1 3 25 25 H 1.09004 * 109.47228 * 120.00506 * 2 1 3 26 26 H 1.00901 * 110.99708 * 323.50678 * 5 3 2 27 27 H 1.09004 * 109.47448 * 303.77640 * 6 5 3 28 28 H 1.08994 * 109.47530 * 63.78227 * 6 5 3 29 29 H 0.96991 * 120.00027 * 180.02562 * 10 9 7 30 30 H 1.08998 * 110.48776 * 339.60126 * 17 15 3 31 31 H 1.09002 * 110.48535 * 102.11289 * 17 15 3 32 32 H 1.08993 * 109.87635 * 117.40000 * 18 17 15 33 33 H 1.08998 * 109.87606 * 238.39647 * 18 17 15 34 34 H 1.09008 * 110.61888 * 201.43646 * 20 19 18 35 35 H 1.09001 * 110.62085 * 78.43936 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5951 1.9851 -0.8340 5 7 3.5024 1.4447 -0.1387 6 6 3.8970 1.4307 -1.5536 7 6 5.3978 1.3398 -1.6556 8 1 5.9985 1.2971 -0.7591 9 6 6.0042 1.3111 -2.8936 10 7 7.3140 1.2322 -2.9826 11 14 4.9654 1.3841 -4.4443 12 1 4.7748 2.8010 -4.8462 13 1 5.6527 0.6483 -5.5357 14 1 3.6428 0.7613 -4.1838 15 6 1.6514 2.1207 1.3152 16 1 0.5867 1.9980 1.5143 17 6 2.0415 3.6189 1.3005 18 6 2.5969 3.8784 2.7143 19 8 2.4747 2.6515 3.4533 20 6 2.5013 1.5755 2.4911 21 1 -0.3634 -1.0225 -0.1035 22 1 -0.3633 0.4216 0.9372 23 1 -0.3633 0.6008 -0.8338 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 3.9140 0.6697 0.3593 27 1 3.4465 0.5700 -2.0480 28 1 3.5550 2.3466 -2.0353 29 1 7.7406 1.2124 -3.8535 30 1 2.8085 3.8060 0.5490 31 1 1.1653 4.2394 1.1127 32 1 3.6449 4.1713 2.6528 33 1 2.0202 4.6654 3.2003 34 1 2.0475 0.6763 2.9081 35 1 3.5225 1.3760 2.1664 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308178395.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:32 Heat of formation + Delta-G solvation = -79.457704 kcal Electronic energy + Delta-G solvation = -14877.458430 eV Core-core repulsion = 12487.981298 eV Total energy + Delta-G solvation = -2389.477132 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.63909 -37.97545 -35.18220 -33.38693 -32.47776 -30.13303 -28.85034 -25.69616 -24.11621 -23.20219 -22.37127 -20.64444 -18.90293 -17.45045 -17.13399 -16.39087 -16.14356 -15.67192 -15.52195 -15.04925 -14.64062 -14.31389 -14.07267 -13.83722 -13.26495 -13.13872 -12.70084 -12.54954 -12.29718 -12.24486 -12.15961 -11.87693 -11.77355 -11.54801 -11.31769 -11.08068 -10.81793 -10.50985 -9.06239 -8.30995 -6.35208 1.33743 1.34827 1.45730 2.32559 3.03443 3.07845 3.49498 3.68410 3.94044 4.05439 4.17088 4.28458 4.31999 4.51883 4.53355 4.65154 4.74771 4.81911 4.87520 4.95833 5.01188 5.07842 5.09107 5.15599 5.17517 5.30698 5.43911 5.45581 5.52610 5.96150 6.01649 6.54824 6.66980 6.78416 7.29992 8.85753 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031406 B = 0.008560 C = 0.007464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.327711 B = 3270.209093 C = 3750.215235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.151 4.151 3 C 0.093 3.907 4 H 0.069 0.931 5 N -0.679 5.679 6 C 0.178 3.822 7 C -0.527 4.527 8 H 0.036 0.964 9 C 0.007 3.993 10 N -0.948 5.948 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.250 1.250 15 C -0.099 4.099 16 H 0.103 0.897 17 C -0.145 4.145 18 C 0.048 3.952 19 O -0.402 6.402 20 C 0.051 3.949 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.335 0.665 27 H -0.013 1.013 28 H 0.021 0.979 29 H 0.267 0.733 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.080 0.871 6.740 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.191 4.191 3 C -0.017 4.017 4 H 0.087 0.913 5 N -0.309 5.309 6 C 0.050 3.950 7 C -0.565 4.565 8 H 0.054 0.946 9 C -0.190 4.190 10 N -0.589 5.589 11 Si 0.774 3.226 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.173 1.173 15 C -0.118 4.118 16 H 0.121 0.879 17 C -0.183 4.183 18 C -0.028 4.028 19 O -0.322 6.322 20 C -0.025 4.025 21 H 0.079 0.921 22 H 0.088 0.912 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.153 0.847 27 H 0.005 0.995 28 H 0.039 0.961 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.063 0.937 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.886 1.543 6.903 17.390 hybrid contribution 0.346 -0.847 -1.328 1.613 sum -15.540 0.696 5.576 16.525 Atomic orbital electron populations 1.21726 0.93699 1.02154 1.02450 1.22219 0.98163 0.97001 1.01672 1.21565 0.87905 0.95153 0.97120 0.91284 1.60498 1.07807 1.50047 1.12562 1.19720 0.93676 0.94560 0.87063 1.21365 0.92020 1.50006 0.93102 0.94552 1.25880 0.96042 0.94246 1.02847 1.70058 1.10744 1.52308 1.25748 0.85669 0.79538 0.79075 0.78352 1.19183 1.20787 1.17349 1.22722 1.00415 0.94574 0.94110 0.87876 1.22885 1.01777 0.96493 0.97160 1.23169 1.00247 0.87516 0.91871 1.88758 1.95003 1.16074 1.32353 1.23634 0.99898 0.90702 0.88289 0.92093 0.91204 0.92764 0.93685 0.91205 0.84650 0.99516 0.96119 0.92420 0.91555 0.89412 0.93701 0.88395 0.88198 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.57 71.98 0.69 -2.11 16 2 C -0.15 -3.89 5.33 30.59 0.16 -3.73 16 3 C 0.09 2.74 1.76 44.91 0.08 2.82 16 4 H 0.07 2.12 7.81 -2.39 -0.02 2.10 16 5 N -0.68 -26.29 4.84 -495.61 -2.40 -28.69 16 6 C 0.18 8.32 4.29 85.56 0.37 8.69 16 7 C -0.53 -30.34 9.83 25.60 0.25 -30.08 16 8 H 0.04 2.33 8.06 -2.91 -0.02 2.31 16 9 C 0.01 0.42 5.47 84.65 0.46 0.89 16 10 N -0.95 -59.43 13.96 21.45 0.30 -59.13 16 11 Si 0.95 43.97 27.47 68.60 1.88 45.85 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 15 C -0.10 -2.52 2.84 -9.49 -0.03 -2.55 16 16 H 0.10 2.17 6.46 -2.38 -0.02 2.16 16 17 C -0.15 -3.83 6.50 31.59 0.21 -3.63 16 18 C 0.05 1.29 7.70 72.36 0.56 1.85 16 19 O -0.40 -12.09 11.52 -148.98 -1.72 -13.81 16 20 C 0.05 1.41 6.46 72.67 0.47 1.88 16 21 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.07 1.17 6.72 -2.39 -0.02 1.16 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.04 1.34 7.48 -2.38 -0.02 1.32 16 25 H 0.07 1.68 7.50 -2.38 -0.02 1.66 16 26 H 0.34 13.08 7.37 -89.69 -0.66 12.42 16 27 H -0.01 -0.59 6.52 -2.38 -0.02 -0.61 16 28 H 0.02 0.97 7.56 -2.39 -0.02 0.95 16 29 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 30 H 0.07 2.13 7.47 -2.39 -0.02 2.11 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.10 2.32 8.04 -2.38 -0.02 2.30 16 35 H 0.06 1.77 6.29 -2.39 -0.02 1.76 16 Total: -1.00 -64.99 274.57 1.63 -63.36 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.34 Total: 18.39 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 3.22 Total: -25.98 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.10 Total: -87.82 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.72 Total: -13.81 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Total: -64.99 1.63 -63.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308178395.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.097 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds